Wall clock time and date at job start Mon Mar 30 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46856 * 2 1 4 4 C 1.50697 * 109.46802 * 119.99697 * 2 1 3 5 5 H 1.07998 * 120.00305 * 120.00192 * 4 2 1 6 6 C 1.37878 * 120.00080 * 300.00309 * 4 2 1 7 7 N 1.31521 * 120.00236 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47297 * 89.99869 * 8 6 4 10 10 H 1.48500 * 109.46989 * 209.99911 * 8 6 4 11 11 H 1.48499 * 109.46973 * 329.99795 * 8 6 4 12 12 C 1.50698 * 109.47388 * 239.99774 * 2 1 3 13 13 O 1.21281 * 119.99613 * 247.78562 * 12 2 1 14 14 N 1.34777 * 120.00022 * 67.78094 * 12 2 1 15 15 C 1.47130 * 121.04433 * 3.21100 * 14 12 2 16 16 C 1.53686 * 108.45911 * 127.76803 * 15 14 12 17 17 H 1.09005 * 109.65102 * 294.32420 * 16 15 14 18 18 C 1.52998 * 109.44167 * 174.20810 * 16 15 14 19 19 O 1.43090 * 109.26371 * 54.32679 * 16 15 14 20 20 C 1.42586 * 113.96220 * 299.74820 * 19 16 15 21 21 C 1.53345 * 113.71513 * 189.35169 * 20 19 16 22 22 C 1.53864 * 86.96842 * 89.60636 * 21 20 19 23 23 C 1.53377 * 113.66484 * 287.42747 * 20 19 16 24 24 C 1.47327 * 121.04450 * 183.49074 * 14 12 2 25 25 H 1.08998 * 109.47426 * 307.35868 * 1 2 3 26 26 H 1.09003 * 109.47092 * 67.35824 * 1 2 3 27 27 H 1.09002 * 109.47651 * 187.35188 * 1 2 3 28 28 H 0.96995 * 120.00281 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.59185 * 247.58896 * 15 14 12 30 30 H 1.09000 * 109.59588 * 8.05382 * 15 14 12 31 31 H 1.08997 * 109.47016 * 300.25772 * 18 16 15 32 32 H 1.09001 * 109.47185 * 60.25783 * 18 16 15 33 33 H 1.09007 * 109.47057 * 180.26108 * 18 16 15 34 34 H 1.08992 * 113.63419 * 204.12901 * 21 20 19 35 35 H 1.09003 * 113.62905 * 335.09066 * 21 20 19 36 36 H 1.08995 * 113.60184 * 270.56136 * 22 21 20 37 37 H 1.08996 * 113.67478 * 139.70683 * 22 21 20 38 38 H 1.09003 * 113.63483 * 24.86782 * 23 20 19 39 39 H 1.09009 * 113.63123 * 155.74192 * 23 20 19 40 40 H 1.08999 * 109.74479 * 348.15289 * 24 14 12 41 41 H 1.08996 * 109.74491 * 108.82900 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2393 2.4827 7 7 0.9433 0.8304 2.6034 8 14 2.3222 -1.1194 4.0081 9 1 3.6302 -0.5438 4.4121 10 1 1.3441 -0.9488 5.1123 11 1 2.4878 -2.5652 3.7124 12 6 2.0324 -0.7104 -1.2304 13 8 2.6089 -1.7722 -1.1246 14 7 1.8409 -0.1660 -2.4483 15 6 1.2070 1.1533 -2.5986 16 6 2.1152 2.0329 -3.4723 17 1 3.0524 2.2248 -2.9498 18 6 1.4118 3.3601 -3.7631 19 8 2.3852 1.3558 -4.7036 20 6 3.0450 0.1020 -4.5425 21 6 3.5338 -0.5115 -5.8601 22 6 4.8478 0.2570 -5.6358 23 6 4.5177 0.2295 -4.1334 24 6 2.2542 -0.8758 -3.6714 25 1 -0.3634 0.6236 0.8168 26 1 -0.3633 0.3956 -0.9485 27 1 -0.3634 -1.0192 0.1315 28 1 0.7092 1.1620 3.4843 29 1 0.2341 1.0390 -3.0764 30 1 1.0836 1.6133 -1.6181 31 1 0.4744 3.1677 -4.2850 32 1 1.2062 3.8755 -2.8250 33 1 2.0536 3.9825 -4.3867 34 1 3.6491 -1.5946 -5.8215 35 1 2.9743 -0.1749 -6.7329 36 1 4.8460 1.2590 -6.0648 37 1 5.7388 -0.3137 -5.8975 38 1 4.7490 1.1617 -3.6180 39 1 4.9049 -0.6481 -3.6155 40 1 2.8831 -1.7265 -3.4087 41 1 1.3732 -1.2220 -4.2117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597816681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:08 Heat of formation + Delta-G solvation = -78.263620 kcal Electronic energy + Delta-G solvation = -21834.540233 eV Core-core repulsion = 18714.442789 eV Total energy + Delta-G solvation = -3120.097445 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.86715 -40.10265 -37.68636 -35.87617 -35.64767 -32.88284 -32.45951 -29.15501 -27.34852 -27.18379 -26.81338 -24.80150 -23.45986 -22.36593 -20.26519 -20.17085 -18.48917 -17.88393 -17.46438 -17.14657 -16.74223 -16.29374 -15.91104 -15.69322 -15.32293 -14.91368 -14.68897 -14.38175 -14.08442 -13.54630 -13.39752 -13.13476 -13.11527 -12.98445 -12.85520 -12.74336 -12.60861 -12.37198 -12.25558 -12.04446 -11.99237 -11.82159 -11.66741 -11.32294 -11.06917 -10.81569 -10.62037 -10.30139 -9.43227 -8.18195 -6.27843 1.38783 1.39648 1.51475 1.81957 2.00108 2.42914 2.49333 3.11838 3.47531 3.59178 3.67497 3.83062 3.86439 3.96860 4.02231 4.25467 4.30832 4.44766 4.52242 4.62146 4.69461 4.73781 4.74702 4.77943 4.89042 4.90367 4.96436 4.96869 5.02876 5.06634 5.19566 5.30811 5.36072 5.42151 5.53155 5.70292 5.88596 6.13600 6.20957 6.49058 6.79181 7.34114 7.43221 8.88433 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.005625 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.698986 B = 4976.608758 C = 5498.927398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.031 3.969 3 H 0.041 0.959 4 C -0.532 4.532 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.522 3.478 13 O -0.586 6.586 14 N -0.621 5.621 15 C 0.077 3.923 16 C 0.074 3.926 17 H 0.051 0.949 18 C -0.135 4.135 19 O -0.353 6.353 20 C 0.076 3.924 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.169 4.169 24 C 0.094 3.906 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.018 0.982 28 H 0.266 0.734 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 4.806 -16.822 17.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.010 3.990 3 H 0.058 0.942 4 C -0.570 4.570 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.206 1.206 12 C 0.314 3.686 13 O -0.465 6.465 14 N -0.355 5.355 15 C -0.045 4.045 16 C 0.016 3.984 17 H 0.069 0.931 18 C -0.193 4.193 19 O -0.272 6.272 20 C 0.035 3.965 21 C -0.147 4.147 22 C -0.157 4.157 23 C -0.207 4.207 24 C -0.028 4.028 25 H 0.091 0.909 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.738 4.438 -16.795 17.458 hybrid contribution 0.345 -0.666 1.547 1.720 sum 2.083 3.772 -15.248 15.845 Atomic orbital electron populations 1.21597 0.94950 0.99980 1.00896 1.18746 0.95235 0.95741 0.89294 0.94169 1.21253 1.31937 1.12706 0.91152 0.93619 1.25571 0.95086 0.95727 1.01299 1.69946 1.36991 1.23410 1.24413 0.85605 0.78485 0.78717 0.79144 1.19878 1.19763 1.20558 1.21707 0.76798 0.84937 0.85199 1.90484 1.44011 1.25207 1.86822 1.48356 1.61549 1.20270 1.05351 1.22758 0.96898 0.82536 1.02319 1.22649 0.97470 0.93207 0.85103 0.93140 1.21720 1.01112 0.92832 1.03595 1.87858 1.78028 1.31868 1.29482 1.22716 0.90763 0.84973 0.98044 1.22926 0.96269 1.00656 0.94815 1.22735 0.97963 1.01373 0.93584 1.23465 0.96521 1.01893 0.98794 1.22216 0.99904 0.95824 0.84900 0.90877 0.93071 0.96260 0.92488 0.89403 0.88581 0.90673 0.89557 0.90642 0.87460 0.89086 0.89409 0.89664 0.92410 0.90552 0.90045 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.47 71.98 0.61 -4.82 16 2 C 0.03 1.58 1.79 -12.29 -0.02 1.56 16 3 H 0.04 2.11 7.13 -2.39 -0.02 2.09 16 4 C -0.53 -31.29 8.36 25.60 0.21 -31.07 16 5 H 0.05 2.89 6.78 -2.91 -0.02 2.87 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -50.75 11.41 21.45 0.24 -50.51 16 8 Si 0.95 45.13 29.54 68.60 2.03 47.16 16 9 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 12 C 0.52 25.10 7.00 87.66 0.61 25.72 16 13 O -0.59 -32.27 14.98 -3.03 -0.05 -32.32 16 14 N -0.62 -23.22 3.02 -816.83 -2.47 -25.68 16 15 C 0.08 2.36 4.39 86.49 0.38 2.74 16 16 C 0.07 1.93 3.31 30.82 0.10 2.04 16 17 H 0.05 1.46 7.11 -2.38 -0.02 1.45 16 18 C -0.14 -2.58 9.57 71.98 0.69 -1.89 16 19 O -0.35 -9.34 10.08 -148.98 -1.50 -10.85 16 20 C 0.08 1.99 1.12 -10.56 -0.01 1.98 16 21 C -0.11 -2.11 7.47 31.00 0.23 -1.88 16 22 C -0.12 -2.30 8.03 31.17 0.25 -2.05 16 23 C -0.17 -4.47 7.23 31.01 0.22 -4.25 16 24 C 0.09 2.99 5.78 86.21 0.50 3.49 16 25 H 0.07 3.66 6.31 -2.39 -0.02 3.64 16 26 H 0.05 1.96 6.06 -2.39 -0.01 1.95 16 27 H 0.02 0.91 8.13 -2.39 -0.02 0.89 16 28 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.09 2.36 8.13 -2.39 -0.02 2.35 16 30 H 0.10 3.16 5.18 -2.39 -0.01 3.15 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.11 1.83 8.09 -2.39 -0.02 1.81 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.64 7.18 -2.39 -0.02 1.63 16 39 H 0.08 2.22 7.95 -2.38 -0.02 2.20 16 40 H 0.08 2.86 6.90 -2.39 -0.02 2.85 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -67.65 318.41 3.49 -64.16 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.01 Total: 14.75 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.23 Total: -6.71 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.22 Total: -76.19 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.55 Total: -43.16 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -67.65 3.49 -64.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597816681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.105 kcal (2) G-P(sol) polarization free energy of solvation -67.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds