Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46767 * 2 1 4 4 C 1.50698 * 109.47131 * 120.00282 * 2 1 3 5 5 H 1.07995 * 119.99892 * 115.23068 * 4 2 1 6 6 C 1.37877 * 119.99804 * 295.23063 * 4 2 1 7 7 N 1.31515 * 120.00153 * 345.81716 * 6 4 2 8 8 Si 1.86799 * 119.99955 * 165.82369 * 6 4 2 9 9 H 1.48499 * 109.47492 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47237 * 299.99928 * 8 6 4 11 11 H 1.48497 * 109.47261 * 59.99749 * 8 6 4 12 12 C 1.50703 * 109.46967 * 240.00138 * 2 1 3 13 13 O 1.21280 * 120.00107 * 264.76822 * 12 2 1 14 14 N 1.34771 * 119.99813 * 84.76445 * 12 2 1 15 15 C 1.47127 * 121.04618 * 5.03040 * 14 12 2 16 16 C 1.53217 * 108.72236 * 232.12347 * 15 14 12 17 17 H 1.09006 * 109.49161 * 65.90113 * 16 15 14 18 18 C 1.53000 * 109.49373 * 185.94753 * 16 15 14 19 19 O 1.43093 * 109.34756 * 305.94079 * 16 15 14 20 20 C 1.42585 * 113.95241 * 60.10997 * 19 16 15 21 21 C 1.53337 * 113.72473 * 170.61156 * 20 19 16 22 22 C 1.53852 * 86.97010 * 219.99945 * 21 20 19 23 23 C 1.53377 * 113.64968 * 72.53919 * 20 19 16 24 24 C 1.47319 * 121.04317 * 184.74149 * 14 12 2 25 25 H 1.09000 * 109.46952 * 302.52014 * 1 2 3 26 26 H 1.08998 * 109.46868 * 62.52109 * 1 2 3 27 27 H 1.08999 * 109.46854 * 182.52424 * 1 2 3 28 28 H 0.96998 * 120.00016 * 354.30926 * 7 6 4 29 29 H 1.09002 * 109.59295 * 351.89648 * 15 14 12 30 30 H 1.09006 * 109.59520 * 112.35497 * 15 14 12 31 31 H 1.09003 * 109.46630 * 60.00732 * 18 16 15 32 32 H 1.08998 * 109.47376 * 180.02562 * 18 16 15 33 33 H 1.08994 * 109.47519 * 300.00487 * 18 16 15 34 34 H 1.09001 * 113.63320 * 334.51683 * 21 20 19 35 35 H 1.09003 * 113.63484 * 105.47431 * 21 20 19 36 36 H 1.09007 * 113.60498 * 270.55594 * 22 21 20 37 37 H 1.09004 * 113.67561 * 139.70894 * 22 21 20 38 38 H 1.09004 * 113.63187 * 254.58882 * 23 20 19 39 39 H 1.09000 * 113.63615 * 25.46623 * 23 20 19 40 40 H 1.09001 * 109.75080 * 251.15686 * 24 14 12 41 41 H 1.08998 * 109.75115 * 11.88621 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5882 -1.6312 1.1331 6 6 1.7823 -0.1849 2.4803 7 7 1.3604 1.0550 2.5999 8 14 2.0429 -1.2338 4.0038 9 1 1.7066 -0.4415 5.2139 10 1 1.1670 -2.4311 3.9363 11 1 3.4629 -1.6627 4.0726 12 6 2.0324 -0.7104 -1.2305 13 8 2.3248 -1.8861 -1.1751 14 7 2.1565 -0.0392 -2.3926 15 6 1.9138 1.4103 -2.4613 16 6 0.9123 1.6884 -3.5871 17 1 -0.0538 1.2539 -3.3300 18 6 0.7593 3.1994 -3.7726 19 8 1.3907 1.1036 -4.8022 20 6 1.5662 -0.3098 -4.7346 21 6 1.8572 -0.9611 -6.0920 22 6 0.9335 -2.1084 -5.6477 23 6 0.2477 -1.0933 -4.7170 24 6 2.5458 -0.7327 -3.6326 25 1 -0.3633 0.5525 0.8665 26 1 -0.3633 0.4742 -0.9117 27 1 -0.3633 -1.0267 0.0453 28 1 1.3039 1.6257 1.8176 29 1 1.5035 1.7575 -1.5130 30 1 2.8501 1.9284 -2.6687 31 1 1.7254 3.6333 -4.0306 32 1 0.0465 3.3968 -4.5732 33 1 0.3969 3.6444 -2.8460 34 1 1.4729 -0.3942 -6.9400 35 1 2.8974 -1.2614 -6.2185 36 1 1.4529 -2.9062 -5.1166 37 1 0.2852 -2.4806 -6.4410 38 1 -0.0059 -1.5000 -3.7380 39 1 -0.5824 -0.5624 -5.1830 40 1 3.5611 -0.4493 -3.9100 41 1 2.4913 -1.8112 -3.4842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597816682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = -64.787023 kcal Electronic energy + Delta-G solvation = -21946.232203 eV Core-core repulsion = 18826.719148 eV Total energy + Delta-G solvation = -3119.513056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69246 -38.55191 -36.78265 -34.28523 -34.16582 -31.75678 -30.43520 -27.62374 -26.00194 -25.89185 -24.95039 -23.81235 -22.10561 -21.30031 -19.09240 -18.48610 -17.04511 -16.71027 -16.62712 -15.53452 -15.40061 -14.65546 -14.47714 -14.30472 -13.74053 -13.43023 -13.08596 -13.01993 -12.73537 -12.47123 -12.38497 -12.17512 -11.78267 -11.52995 -11.29740 -11.22656 -11.15453 -10.98411 -10.76729 -10.75148 -10.69509 -10.32275 -10.26347 -10.06744 -9.69918 -8.81542 -8.57392 -8.28336 -8.12945 -6.41350 -4.08875 3.36310 3.46887 3.47202 3.52681 3.61565 3.67833 4.46597 4.51094 4.53851 4.64069 4.73951 4.90840 5.12210 5.15893 5.22779 5.29042 5.44206 5.53826 5.60477 5.62487 5.72989 5.75914 5.78356 5.79637 5.92978 5.97225 5.99412 6.13561 6.17046 6.23869 6.32719 6.49661 6.61250 6.82952 7.04413 7.27148 7.32900 7.81988 8.14407 8.51012 8.83080 9.03666 9.57136 10.95257 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.005781 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.807782 B = 4842.047577 C = 5461.245907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.019 3.981 3 H 0.040 0.960 4 C -0.587 4.587 5 H 0.064 0.936 6 C 0.026 3.974 7 N -0.906 5.906 8 Si 1.064 2.936 9 H -0.283 1.283 10 H -0.286 1.286 11 H -0.288 1.288 12 C 0.532 3.468 13 O -0.540 6.540 14 N -0.629 5.629 15 C 0.080 3.920 16 C 0.074 3.926 17 H 0.063 0.937 18 C -0.142 4.142 19 O -0.365 6.365 20 C 0.080 3.920 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.159 4.159 24 C 0.108 3.892 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.045 0.955 28 H 0.267 0.733 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 1.834 -15.949 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.002 4.002 3 H 0.057 0.943 4 C -0.625 4.625 5 H 0.082 0.918 6 C -0.178 4.178 7 N -0.542 5.542 8 Si 0.892 3.108 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.214 1.214 12 C 0.324 3.676 13 O -0.415 6.415 14 N -0.365 5.365 15 C -0.043 4.043 16 C 0.015 3.985 17 H 0.081 0.919 18 C -0.200 4.200 19 O -0.284 6.284 20 C 0.039 3.961 21 C -0.154 4.154 22 C -0.176 4.176 23 C -0.197 4.197 24 C -0.015 4.015 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.843 1.272 -14.383 14.556 hybrid contribution 0.158 -0.008 -1.520 1.528 sum -1.685 1.263 -15.903 16.042 Atomic orbital electron populations 1.21760 0.96756 1.00986 0.99406 1.18975 0.93634 0.96658 0.90940 0.94281 1.21826 1.39238 1.10959 0.90520 0.91752 1.25787 0.93718 0.97178 1.01095 1.70831 1.43951 1.05749 1.33659 0.83627 0.76584 0.75189 0.75410 1.20828 1.21280 1.21397 1.21695 0.75072 0.87258 0.83611 1.90530 1.49431 1.17148 1.84398 1.48421 1.71253 1.08287 1.08525 1.22414 0.99492 0.81734 1.00698 1.22455 0.96558 0.94588 0.84851 0.91926 1.21728 1.02861 0.92669 1.02737 1.87893 1.86567 1.19847 1.34112 1.23133 0.95733 0.81024 0.96170 1.22953 1.00586 0.96121 0.95744 1.22736 0.98875 0.96485 0.99548 1.23442 0.97441 0.97973 1.00841 1.21847 0.96685 0.99412 0.83554 0.91544 0.96130 0.93539 0.92217 0.87836 0.91289 0.91677 0.91733 0.90582 0.89036 0.90607 0.89668 0.90788 0.90985 0.89523 0.91483 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.79 37.16 0.33 -2.64 16 2 C 0.02 0.47 1.45 -92.92 -0.13 0.34 16 3 H 0.04 0.97 5.45 -51.93 -0.28 0.68 16 4 C -0.59 -16.83 8.27 -34.44 -0.28 -17.11 16 5 H 0.06 1.97 7.02 -52.49 -0.37 1.60 16 6 C 0.03 0.74 5.14 -17.82 -0.09 0.65 16 7 N -0.91 -26.12 12.87 55.43 0.71 -25.41 16 8 Si 1.06 25.40 29.93 -169.99 -5.09 20.32 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.53 12.46 6.81 -10.99 -0.07 12.38 16 13 O -0.54 -14.31 15.30 5.56 0.09 -14.23 16 14 N -0.63 -11.79 3.02 -172.15 -0.52 -12.31 16 15 C 0.08 1.27 5.71 -3.59 -0.02 1.25 16 16 C 0.07 1.01 3.30 -26.62 -0.09 0.92 16 17 H 0.06 0.90 7.77 -51.93 -0.40 0.50 16 18 C -0.14 -1.54 9.57 37.16 0.36 -1.18 16 19 O -0.36 -5.23 10.16 -35.23 -0.36 -5.59 16 20 C 0.08 1.10 1.25 -90.05 -0.11 0.99 16 21 C -0.12 -1.27 7.50 -26.11 -0.20 -1.47 16 22 C -0.14 -1.51 7.74 -25.85 -0.20 -1.71 16 23 C -0.16 -2.09 6.92 -26.10 -0.18 -2.27 16 24 C 0.11 1.75 5.65 -3.39 -0.02 1.74 16 25 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 26 H 0.02 0.39 7.98 -51.93 -0.41 -0.03 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.27 7.52 6.64 -40.82 -0.27 7.25 16 29 H 0.10 1.72 5.33 -51.93 -0.28 1.44 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.70 6.41 -51.93 -0.33 1.37 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -31.99 321.30 -7.59 -39.58 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.55 Total: 0.91 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.72 Total: -8.12 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.19 Total: -37.72 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.27 Total: -19.82 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.99 -7.59 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597816682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.203 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds