Wall clock time and date at job start Mon Mar 30 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46767 * 2 1 4 4 C 1.50698 * 109.47131 * 120.00282 * 2 1 3 5 5 H 1.07995 * 119.99892 * 115.23068 * 4 2 1 6 6 C 1.37877 * 119.99804 * 295.23063 * 4 2 1 7 7 N 1.31515 * 120.00153 * 345.81716 * 6 4 2 8 8 Si 1.86799 * 119.99955 * 165.82369 * 6 4 2 9 9 H 1.48499 * 109.47492 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47237 * 299.99928 * 8 6 4 11 11 H 1.48497 * 109.47261 * 59.99749 * 8 6 4 12 12 C 1.50703 * 109.46967 * 240.00138 * 2 1 3 13 13 O 1.21280 * 120.00107 * 264.76822 * 12 2 1 14 14 N 1.34771 * 119.99813 * 84.76445 * 12 2 1 15 15 C 1.47127 * 121.04618 * 5.03040 * 14 12 2 16 16 C 1.53217 * 108.72236 * 232.12347 * 15 14 12 17 17 H 1.09006 * 109.49161 * 65.90113 * 16 15 14 18 18 C 1.53000 * 109.49373 * 185.94753 * 16 15 14 19 19 O 1.43093 * 109.34756 * 305.94079 * 16 15 14 20 20 C 1.42585 * 113.95241 * 60.10997 * 19 16 15 21 21 C 1.53337 * 113.72473 * 170.61156 * 20 19 16 22 22 C 1.53852 * 86.97010 * 219.99945 * 21 20 19 23 23 C 1.53377 * 113.64968 * 72.53919 * 20 19 16 24 24 C 1.47319 * 121.04317 * 184.74149 * 14 12 2 25 25 H 1.09000 * 109.46952 * 302.52014 * 1 2 3 26 26 H 1.08998 * 109.46868 * 62.52109 * 1 2 3 27 27 H 1.08999 * 109.46854 * 182.52424 * 1 2 3 28 28 H 0.96998 * 120.00016 * 354.30926 * 7 6 4 29 29 H 1.09002 * 109.59295 * 351.89648 * 15 14 12 30 30 H 1.09006 * 109.59520 * 112.35497 * 15 14 12 31 31 H 1.09003 * 109.46630 * 60.00732 * 18 16 15 32 32 H 1.08998 * 109.47376 * 180.02562 * 18 16 15 33 33 H 1.08994 * 109.47519 * 300.00487 * 18 16 15 34 34 H 1.09001 * 113.63320 * 334.51683 * 21 20 19 35 35 H 1.09003 * 113.63484 * 105.47431 * 21 20 19 36 36 H 1.09007 * 113.60498 * 270.55594 * 22 21 20 37 37 H 1.09004 * 113.67561 * 139.70894 * 22 21 20 38 38 H 1.09004 * 113.63187 * 254.58882 * 23 20 19 39 39 H 1.09000 * 113.63615 * 25.46623 * 23 20 19 40 40 H 1.09001 * 109.75080 * 251.15686 * 24 14 12 41 41 H 1.08998 * 109.75115 * 11.88621 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5882 -1.6312 1.1331 6 6 1.7823 -0.1849 2.4803 7 7 1.3604 1.0550 2.5999 8 14 2.0429 -1.2338 4.0038 9 1 1.7066 -0.4415 5.2139 10 1 1.1670 -2.4311 3.9363 11 1 3.4629 -1.6627 4.0726 12 6 2.0324 -0.7104 -1.2305 13 8 2.3248 -1.8861 -1.1751 14 7 2.1565 -0.0392 -2.3926 15 6 1.9138 1.4103 -2.4613 16 6 0.9123 1.6884 -3.5871 17 1 -0.0538 1.2539 -3.3300 18 6 0.7593 3.1994 -3.7726 19 8 1.3907 1.1036 -4.8022 20 6 1.5662 -0.3098 -4.7346 21 6 1.8572 -0.9611 -6.0920 22 6 0.9335 -2.1084 -5.6477 23 6 0.2477 -1.0933 -4.7170 24 6 2.5458 -0.7327 -3.6326 25 1 -0.3633 0.5525 0.8665 26 1 -0.3633 0.4742 -0.9117 27 1 -0.3633 -1.0267 0.0453 28 1 1.3039 1.6257 1.8176 29 1 1.5035 1.7575 -1.5130 30 1 2.8501 1.9284 -2.6687 31 1 1.7254 3.6333 -4.0306 32 1 0.0465 3.3968 -4.5732 33 1 0.3969 3.6444 -2.8460 34 1 1.4729 -0.3942 -6.9400 35 1 2.8974 -1.2614 -6.2185 36 1 1.4529 -2.9062 -5.1166 37 1 0.2852 -2.4806 -6.4410 38 1 -0.0059 -1.5000 -3.7380 39 1 -0.5824 -0.5624 -5.1830 40 1 3.5611 -0.4493 -3.9100 41 1 2.4913 -1.8112 -3.4842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597816682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:10 Heat of formation + Delta-G solvation = -84.655513 kcal Electronic energy + Delta-G solvation = -21947.093766 eV Core-core repulsion = 18826.719148 eV Total energy + Delta-G solvation = -3120.374618 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96572 -40.16669 -37.91517 -36.23673 -35.78451 -32.87931 -32.39557 -28.93122 -27.34298 -27.05255 -26.84409 -25.04443 -23.82300 -22.43889 -20.66552 -19.71186 -18.78404 -18.35995 -18.05865 -16.93569 -16.69427 -16.07650 -15.78207 -15.67204 -15.51906 -15.11392 -14.80387 -14.41355 -14.04364 -13.55634 -13.43330 -13.36295 -13.16714 -13.05236 -13.01732 -12.93787 -12.62534 -12.43062 -12.28270 -12.19481 -11.93543 -11.87286 -11.71124 -11.44519 -10.88438 -10.84899 -10.46336 -10.42929 -9.60352 -8.66831 -6.34518 1.52214 1.57428 1.68133 1.79750 1.87771 2.54194 2.55586 3.09833 3.38704 3.46206 3.59267 3.73492 3.78551 3.83881 3.94326 4.15477 4.24251 4.35190 4.37632 4.43706 4.51012 4.62526 4.67660 4.69586 4.70285 4.75400 4.84501 4.94234 4.97067 4.98879 5.04880 5.11835 5.26593 5.32552 5.38475 5.42457 5.87469 6.16159 6.20344 6.29100 6.63350 7.21209 7.37804 8.71869 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027052 B = 0.005781 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.807782 B = 4842.047577 C = 5461.245907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.015 3.985 3 H 0.041 0.959 4 C -0.611 4.611 5 H 0.035 0.965 6 C -0.010 4.010 7 N -0.917 5.917 8 Si 1.104 2.896 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.529 3.471 13 O -0.583 6.583 14 N -0.621 5.621 15 C 0.074 3.926 16 C 0.078 3.922 17 H 0.055 0.945 18 C -0.137 4.137 19 O -0.364 6.364 20 C 0.073 3.927 21 C -0.102 4.102 22 C -0.132 4.132 23 C -0.162 4.162 24 C 0.104 3.896 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 2.682 -17.685 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.006 4.006 3 H 0.058 0.942 4 C -0.649 4.649 5 H 0.054 0.946 6 C -0.211 4.211 7 N -0.553 5.553 8 Si 0.926 3.074 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.320 3.680 13 O -0.462 6.462 14 N -0.355 5.355 15 C -0.049 4.049 16 C 0.019 3.981 17 H 0.073 0.927 18 C -0.194 4.194 19 O -0.284 6.284 20 C 0.032 3.968 21 C -0.140 4.140 22 C -0.169 4.169 23 C -0.199 4.199 24 C -0.018 4.018 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.059 0.941 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.181 2.168 -16.172 16.462 hybrid contribution 0.283 -0.230 -1.037 1.099 sum -1.898 1.938 -17.209 17.421 Atomic orbital electron populations 1.21559 0.95298 1.00138 1.00394 1.18917 0.94751 0.96250 0.90679 0.94178 1.22003 1.39845 1.10390 0.92693 0.94648 1.26953 0.92919 0.97590 1.03601 1.70916 1.44778 1.06092 1.33533 0.83106 0.77200 0.74259 0.72810 1.19875 1.20370 1.20381 1.21400 0.75178 0.86725 0.84665 1.90499 1.51634 1.18761 1.85303 1.48345 1.69552 1.09552 1.08091 1.22672 1.00981 0.79759 1.01481 1.22486 0.95141 0.96555 0.83872 0.92668 1.21734 1.03726 0.90135 1.03821 1.87913 1.86448 1.19965 1.34032 1.23240 0.95509 0.81045 0.96981 1.22954 1.01475 0.95314 0.94243 1.22719 0.98807 0.95969 0.99403 1.23473 0.97661 0.98841 0.99971 1.22050 0.98229 0.98483 0.83085 0.92884 0.92843 0.94987 0.92678 0.88729 0.89959 0.91016 0.90390 0.89608 0.87350 0.89402 0.90462 0.88438 0.94077 0.88309 0.90362 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.79 71.98 0.63 -4.68 16 2 C 0.02 0.77 1.45 -12.28 -0.02 0.76 16 3 H 0.04 2.02 5.45 -2.39 -0.01 2.01 16 4 C -0.61 -36.02 8.27 25.60 0.21 -35.81 16 5 H 0.04 2.25 7.02 -2.91 -0.02 2.23 16 6 C -0.01 -0.58 5.14 84.65 0.44 -0.15 16 7 N -0.92 -53.10 12.87 21.45 0.28 -52.83 16 8 Si 1.10 51.39 29.93 68.60 2.05 53.45 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.53 25.43 6.81 87.66 0.60 26.03 16 13 O -0.58 -32.17 15.30 -3.03 -0.05 -32.21 16 14 N -0.62 -23.32 3.02 -816.95 -2.47 -25.79 16 15 C 0.07 2.26 5.71 86.33 0.49 2.75 16 16 C 0.08 1.98 3.30 30.67 0.10 2.08 16 17 H 0.06 1.50 7.77 -2.38 -0.02 1.48 16 18 C -0.14 -2.56 9.57 71.98 0.69 -1.87 16 19 O -0.36 -9.51 10.16 -148.98 -1.51 -11.03 16 20 C 0.07 1.87 1.25 -10.43 -0.01 1.86 16 21 C -0.10 -1.93 7.50 30.99 0.23 -1.69 16 22 C -0.13 -2.58 7.74 31.17 0.24 -2.34 16 23 C -0.16 -4.04 6.92 31.01 0.21 -3.82 16 24 C 0.10 3.32 5.65 86.35 0.49 3.81 16 25 H 0.05 2.55 6.86 -2.39 -0.02 2.54 16 26 H 0.05 2.04 7.98 -2.39 -0.02 2.02 16 27 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.26 14.95 6.64 -92.71 -0.62 14.33 16 29 H 0.09 3.08 5.33 -2.39 -0.01 3.07 16 30 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 36 H 0.08 1.65 7.68 -2.38 -0.02 1.63 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.04 1.27 8.10 -2.38 -0.02 1.25 16 39 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.08 2.94 6.41 -2.39 -0.02 2.92 16 Total: -1.00 -69.98 321.30 3.77 -66.22 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.16 Total: 15.28 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.30 Total: -13.08 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.19 Total: -78.62 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.56 Total: -43.24 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.45 kcal Total: -69.98 3.77 -66.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597816682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.439 kcal (2) G-P(sol) polarization free energy of solvation -69.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds