Wall clock time and date at job start Mon Mar 30 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46754 * 2 1 4 4 C 1.50697 * 109.47334 * 240.00643 * 2 1 3 5 5 H 1.07998 * 120.00431 * 239.71501 * 4 2 1 6 6 C 1.37884 * 120.00056 * 59.99750 * 4 2 1 7 7 N 1.31512 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47020 * 59.99466 * 8 6 4 10 10 H 1.48503 * 109.47196 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46959 * 299.99581 * 8 6 4 12 12 C 1.50698 * 109.47497 * 120.00428 * 2 1 3 13 13 O 1.21277 * 120.00444 * 92.26101 * 12 2 1 14 14 N 1.34783 * 119.99888 * 272.26294 * 12 2 1 15 15 C 1.47423 * 121.27707 * 2.45572 * 14 12 2 16 16 C 1.53291 * 108.22498 * 131.85348 * 15 14 12 17 17 H 1.09001 * 109.44662 * 294.12888 * 16 15 14 18 18 C 1.53004 * 109.44535 * 174.18615 * 16 15 14 19 19 O 1.42909 * 109.59886 * 54.14841 * 16 15 14 20 20 C 1.43186 * 114.15044 * 295.74589 * 19 16 15 21 21 C 1.46699 * 121.27631 * 182.18168 * 14 12 2 22 22 C 1.53199 * 113.67663 * 95.39539 * 21 14 12 23 23 C 1.53891 * 86.90584 * 270.16179 * 22 21 14 24 24 C 1.53172 * 113.72306 * 357.09479 * 21 14 12 25 25 H 1.09002 * 109.47583 * 53.71209 * 1 2 3 26 26 H 1.09008 * 109.46596 * 173.70398 * 1 2 3 27 27 H 1.08998 * 109.47218 * 293.70057 * 1 2 3 28 28 H 0.97000 * 119.99850 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.71293 * 251.53709 * 15 14 12 30 30 H 1.09004 * 109.71595 * 12.13024 * 15 14 12 31 31 H 1.09000 * 109.47396 * 60.00502 * 18 16 15 32 32 H 1.09004 * 109.46805 * 179.97438 * 18 16 15 33 33 H 1.09001 * 109.47229 * 299.99647 * 18 16 15 34 34 H 1.08995 * 109.56965 * 179.66791 * 20 19 16 35 35 H 1.09005 * 109.56636 * 299.90548 * 20 19 16 36 36 H 1.09004 * 113.63985 * 24.66261 * 22 21 14 37 37 H 1.08996 * 113.64802 * 155.66021 * 22 21 14 38 38 H 1.08998 * 113.59311 * 220.42866 * 23 22 21 39 39 H 1.09000 * 113.66808 * 89.58724 * 23 22 21 40 40 H 1.08995 * 113.63853 * 204.30139 * 24 21 14 41 41 H 1.09000 * 113.64030 * 335.29208 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6570 -1.5856 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3214 -1.1199 -4.0081 9 1 1.8260 -2.5198 -4.0079 10 1 1.8269 -0.4193 -5.2206 11 1 3.8064 -1.1203 -4.0083 12 6 2.0324 -0.7105 1.2304 13 8 2.2736 -1.8983 1.1888 14 7 2.2136 -0.0258 2.3771 15 6 1.8787 1.4066 2.4744 16 6 1.0503 1.6199 3.7464 17 1 0.0927 1.1090 3.6458 18 6 0.8098 3.1168 3.9526 19 8 1.7551 1.0917 4.8718 20 6 1.9493 -0.3263 4.8286 21 6 2.7460 -0.6788 3.5780 22 6 4.2595 -0.5138 3.7482 23 6 4.4086 -1.8098 2.9318 24 6 2.9920 -2.1807 3.4050 25 1 -0.3634 0.6082 -0.8283 26 1 -0.3633 -1.0216 -0.1127 27 1 -0.3633 0.4131 0.9410 28 1 0.7080 1.1611 -3.4843 29 1 2.7944 1.9953 2.5290 30 1 1.2989 1.7088 1.6023 31 1 0.2701 3.5196 3.0955 32 1 0.2203 3.2689 4.8568 33 1 1.7672 3.6283 4.0523 34 1 2.4966 -0.6470 5.7149 35 1 0.9813 -0.8264 4.7964 36 1 4.6622 0.3668 3.2477 37 1 4.5961 -0.6066 4.7808 38 1 5.1835 -2.4767 3.3097 39 1 4.4802 -1.6440 1.8569 40 1 2.9759 -2.7370 4.3422 41 1 2.3778 -2.6377 2.6292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597817720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:30 Heat of formation + Delta-G solvation = -39.937388 kcal Electronic energy + Delta-G solvation = -22262.703880 eV Core-core repulsion = 19144.268385 eV Total energy + Delta-G solvation = -3118.435495 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87314 -37.99524 -36.94626 -34.19910 -33.51727 -31.75719 -30.33219 -27.69047 -26.09790 -25.38149 -25.10737 -23.54209 -22.06551 -21.05813 -19.69669 -17.82236 -16.78770 -16.35509 -16.05257 -15.52871 -15.21886 -14.70179 -14.50592 -14.27417 -13.78210 -13.67638 -13.07730 -12.84880 -12.59069 -12.16905 -12.10783 -11.91583 -11.56299 -11.49297 -11.25642 -10.99450 -10.80050 -10.72497 -10.70532 -10.59169 -10.31906 -10.20502 -10.06238 -9.94709 -9.63906 -9.04433 -8.46424 -8.00001 -7.86303 -6.08093 -4.11132 3.32864 3.35414 3.36071 3.44400 3.58319 3.78239 4.42399 4.76911 4.88839 4.92370 5.03029 5.16840 5.20837 5.25952 5.30872 5.54695 5.60734 5.62176 5.68799 5.81689 5.82567 5.93905 5.97420 6.02080 6.11510 6.19950 6.25628 6.54229 6.59001 6.68963 6.74322 6.81827 6.92588 7.23622 7.33862 7.41273 7.70716 7.93060 8.04464 8.31850 8.93425 9.20034 9.53666 10.99798 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.006882 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.093867 B = 4067.776611 C = 4930.614378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.032 3.968 3 H 0.046 0.954 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.531 3.469 13 O -0.530 6.530 14 N -0.607 5.607 15 C 0.083 3.917 16 C 0.073 3.927 17 H 0.061 0.939 18 C -0.142 4.142 19 O -0.380 6.380 20 C 0.072 3.928 21 C 0.113 3.887 22 C -0.143 4.143 23 C -0.128 4.128 24 C -0.170 4.170 25 H 0.091 0.909 26 H 0.037 0.963 27 H 0.009 0.991 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 2.567 13.278 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.539 4.539 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.324 3.676 13 O -0.407 6.407 14 N -0.342 5.342 15 C -0.040 4.040 16 C 0.015 3.985 17 H 0.079 0.921 18 C -0.200 4.200 19 O -0.299 6.299 20 C -0.006 4.006 21 C 0.027 3.973 22 C -0.182 4.182 23 C -0.165 4.165 24 C -0.206 4.206 25 H 0.109 0.891 26 H 0.056 0.944 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.915 2.154 13.216 13.422 hybrid contribution 0.327 -0.426 -0.913 1.059 sum 1.242 1.728 12.303 12.486 Atomic orbital electron populations 1.21704 0.96132 1.01202 0.99527 1.18911 0.94239 0.96603 0.89159 0.93640 1.20992 1.31303 1.12642 0.89005 0.91335 1.24924 0.95042 0.94993 0.99050 1.69862 1.36851 1.22944 1.23740 0.86514 0.79205 0.79825 0.81663 1.20117 1.21299 1.20241 1.22040 0.74592 0.87422 0.83498 1.90215 1.51472 1.16041 1.82946 1.47985 1.65879 1.09783 1.10518 1.22472 1.00121 0.82159 0.99247 1.22461 0.94479 0.95543 0.86046 0.92067 1.21724 1.02638 0.92961 1.02644 1.87921 1.77404 1.21500 1.43092 1.22758 0.99099 0.81628 0.97113 1.21652 0.93458 0.95881 0.86350 1.23296 0.95614 0.99024 1.00223 1.22751 0.96794 0.96241 1.00747 1.23969 0.99656 0.93974 1.03034 0.89062 0.94422 0.97187 0.92829 0.91364 0.87610 0.90540 0.91796 0.91667 0.88200 0.92991 0.91616 0.90055 0.92510 0.89659 0.91691 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.62 37.15 0.32 -2.63 16 2 C 0.03 0.78 1.79 -92.93 -0.17 0.61 16 3 H 0.05 1.13 6.61 -51.92 -0.34 0.79 16 4 C -0.50 -13.90 8.32 -34.44 -0.29 -14.18 16 5 H 0.07 1.99 7.09 -52.49 -0.37 1.62 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.63 11.39 55.43 0.63 -24.00 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.53 11.91 6.30 -10.98 -0.07 11.84 16 13 O -0.53 -12.88 10.80 5.56 0.06 -12.82 16 14 N -0.61 -11.21 2.87 -157.90 -0.45 -11.67 16 15 C 0.08 1.33 5.62 -3.39 -0.02 1.31 16 16 C 0.07 1.01 3.34 -26.58 -0.09 0.92 16 17 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 18 C -0.14 -1.54 9.56 37.16 0.36 -1.19 16 19 O -0.38 -5.53 10.40 -35.23 -0.37 -5.90 16 20 C 0.07 1.00 6.16 36.86 0.23 1.22 16 21 C 0.11 1.83 1.23 -131.82 -0.16 1.67 16 22 C -0.14 -2.15 7.43 -26.16 -0.19 -2.35 16 23 C -0.13 -2.13 7.53 -25.81 -0.19 -2.33 16 24 C -0.17 -2.83 6.73 -26.18 -0.18 -3.01 16 25 H 0.09 2.26 6.26 -51.93 -0.33 1.94 16 26 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.01 0.19 7.63 -51.93 -0.40 -0.21 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.11 1.76 5.27 -51.93 -0.27 1.48 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.16 7.92 -51.93 -0.41 0.75 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.08 1.04 7.94 -51.93 -0.41 0.62 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.70 6.91 -51.93 -0.36 1.35 16 40 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.14 2.87 4.71 -56.05 -0.26 2.61 16 LS Contribution 314.27 15.07 4.74 4.74 Total: -1.00 -29.26 314.27 -7.48 -36.73 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.52 Total: 2.94 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.55 Total: -6.54 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.18 Total: -35.67 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.31 Total: -18.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.26 -7.48 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597817720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.203 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds