Wall clock time and date at job start Mon Mar 30 2020 05:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46754 * 2 1 4 4 C 1.50697 * 109.47334 * 240.00643 * 2 1 3 5 5 H 1.07998 * 120.00431 * 239.71501 * 4 2 1 6 6 C 1.37884 * 120.00056 * 59.99750 * 4 2 1 7 7 N 1.31512 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47020 * 59.99466 * 8 6 4 10 10 H 1.48503 * 109.47196 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46959 * 299.99581 * 8 6 4 12 12 C 1.50698 * 109.47497 * 120.00428 * 2 1 3 13 13 O 1.21277 * 120.00444 * 92.26101 * 12 2 1 14 14 N 1.34783 * 119.99888 * 272.26294 * 12 2 1 15 15 C 1.47423 * 121.27707 * 2.45572 * 14 12 2 16 16 C 1.53291 * 108.22498 * 131.85348 * 15 14 12 17 17 H 1.09001 * 109.44662 * 294.12888 * 16 15 14 18 18 C 1.53004 * 109.44535 * 174.18615 * 16 15 14 19 19 O 1.42909 * 109.59886 * 54.14841 * 16 15 14 20 20 C 1.43186 * 114.15044 * 295.74589 * 19 16 15 21 21 C 1.46699 * 121.27631 * 182.18168 * 14 12 2 22 22 C 1.53199 * 113.67663 * 95.39539 * 21 14 12 23 23 C 1.53891 * 86.90584 * 270.16179 * 22 21 14 24 24 C 1.53172 * 113.72306 * 357.09479 * 21 14 12 25 25 H 1.09002 * 109.47583 * 53.71209 * 1 2 3 26 26 H 1.09008 * 109.46596 * 173.70398 * 1 2 3 27 27 H 1.08998 * 109.47218 * 293.70057 * 1 2 3 28 28 H 0.97000 * 119.99850 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.71293 * 251.53709 * 15 14 12 30 30 H 1.09004 * 109.71595 * 12.13024 * 15 14 12 31 31 H 1.09000 * 109.47396 * 60.00502 * 18 16 15 32 32 H 1.09004 * 109.46805 * 179.97438 * 18 16 15 33 33 H 1.09001 * 109.47229 * 299.99647 * 18 16 15 34 34 H 1.08995 * 109.56965 * 179.66791 * 20 19 16 35 35 H 1.09005 * 109.56636 * 299.90548 * 20 19 16 36 36 H 1.09004 * 113.63985 * 24.66261 * 22 21 14 37 37 H 1.08996 * 113.64802 * 155.66021 * 22 21 14 38 38 H 1.08998 * 113.59311 * 220.42866 * 23 22 21 39 39 H 1.09000 * 113.66808 * 89.58724 * 23 22 21 40 40 H 1.08995 * 113.63853 * 204.30139 * 24 21 14 41 41 H 1.09000 * 113.64030 * 335.29208 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.6570 -1.5856 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3214 -1.1199 -4.0081 9 1 1.8260 -2.5198 -4.0079 10 1 1.8269 -0.4193 -5.2206 11 1 3.8064 -1.1203 -4.0083 12 6 2.0324 -0.7105 1.2304 13 8 2.2736 -1.8983 1.1888 14 7 2.2136 -0.0258 2.3771 15 6 1.8787 1.4066 2.4744 16 6 1.0503 1.6199 3.7464 17 1 0.0927 1.1090 3.6458 18 6 0.8098 3.1168 3.9526 19 8 1.7551 1.0917 4.8718 20 6 1.9493 -0.3263 4.8286 21 6 2.7460 -0.6788 3.5780 22 6 4.2595 -0.5138 3.7482 23 6 4.4086 -1.8098 2.9318 24 6 2.9920 -2.1807 3.4050 25 1 -0.3634 0.6082 -0.8283 26 1 -0.3633 -1.0216 -0.1127 27 1 -0.3633 0.4131 0.9410 28 1 0.7080 1.1611 -3.4843 29 1 2.7944 1.9953 2.5290 30 1 1.2989 1.7088 1.6023 31 1 0.2701 3.5196 3.0955 32 1 0.2203 3.2689 4.8568 33 1 1.7672 3.6283 4.0523 34 1 2.4966 -0.6470 5.7149 35 1 0.9813 -0.8264 4.7964 36 1 4.6622 0.3668 3.2477 37 1 4.5961 -0.6066 4.7808 38 1 5.1835 -2.4767 3.3097 39 1 4.4802 -1.6440 1.8569 40 1 2.9759 -2.7370 4.3422 41 1 2.3778 -2.6377 2.6292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597817720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:30 Heat of formation + Delta-G solvation = -57.777300 kcal Electronic energy + Delta-G solvation = -22263.477476 eV Core-core repulsion = 19144.268385 eV Total energy + Delta-G solvation = -3119.209091 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26918 -39.41889 -38.31239 -35.89033 -35.25500 -32.90835 -32.27795 -28.88746 -27.34510 -27.31880 -26.49999 -25.09785 -23.51583 -22.24512 -21.28317 -19.31310 -18.33373 -18.13778 -17.44622 -16.91615 -16.60112 -16.49270 -15.79981 -15.62854 -15.41832 -14.99143 -14.65430 -14.32545 -14.21248 -13.50799 -13.40490 -13.07832 -12.97566 -12.89460 -12.78166 -12.67627 -12.49166 -12.47087 -12.33028 -12.07534 -11.94596 -11.75211 -11.51996 -11.26285 -11.09870 -10.93314 -10.55512 -9.55249 -9.38769 -8.18387 -6.28322 1.39013 1.40324 1.48419 1.84630 1.97441 2.42239 2.71019 3.11676 3.56816 3.61517 3.70032 3.83808 3.98444 4.03866 4.13294 4.27331 4.39480 4.46656 4.51237 4.63838 4.67267 4.73688 4.78300 4.83896 4.86898 4.91504 4.98392 4.99972 5.04165 5.20983 5.26880 5.33539 5.44177 5.45629 5.69730 5.84864 5.97571 6.13884 6.14996 6.54853 6.76805 7.37276 7.52096 8.87804 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.006882 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.093867 B = 4067.776611 C = 4930.614378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.030 3.970 3 H 0.038 0.962 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.275 1.275 12 C 0.528 3.472 13 O -0.558 6.558 14 N -0.604 5.604 15 C 0.078 3.922 16 C 0.077 3.923 17 H 0.058 0.942 18 C -0.137 4.137 19 O -0.381 6.381 20 C 0.075 3.925 21 C 0.102 3.898 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.040 0.960 28 H 0.266 0.734 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.100 0.900 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 3.259 15.307 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.008 3.992 3 H 0.055 0.945 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.204 1.204 10 H -0.198 1.198 11 H -0.201 1.201 12 C 0.320 3.680 13 O -0.438 6.438 14 N -0.337 5.337 15 C -0.044 4.044 16 C 0.019 3.981 17 H 0.076 0.924 18 C -0.194 4.194 19 O -0.300 6.300 20 C -0.002 4.002 21 C 0.016 3.984 22 C -0.166 4.166 23 C -0.171 4.171 24 C -0.205 4.205 25 H 0.092 0.908 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.106 2.883 15.274 15.583 hybrid contribution 0.288 -0.649 -1.526 1.683 sum 1.394 2.234 13.748 13.998 Atomic orbital electron populations 1.21493 0.95340 0.99845 1.00387 1.18810 0.94908 0.95879 0.89556 0.94454 1.21144 1.31864 1.12530 0.91068 0.93795 1.25557 0.95143 0.95668 1.01289 1.69934 1.36934 1.23395 1.24470 0.85680 0.78687 0.78718 0.78977 1.20352 1.19807 1.20091 1.21587 0.75058 0.87078 0.84283 1.90260 1.52754 1.17004 1.83748 1.47910 1.64830 1.10731 1.10252 1.22667 1.00799 0.80612 1.00351 1.22497 0.93507 0.97447 0.84661 0.92428 1.21730 1.03304 0.90638 1.03763 1.87934 1.77363 1.21764 1.42952 1.22867 0.99155 0.81443 0.96749 1.21956 0.94828 0.95467 0.86149 1.23274 0.94306 0.97325 1.01680 1.22667 0.97767 0.98140 0.98480 1.23832 0.98713 0.94505 1.03424 0.90805 0.96129 0.94124 0.92482 0.90700 0.88722 0.89604 0.90406 0.91212 0.84903 0.92998 0.92771 0.86386 0.90311 0.94111 0.88188 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.31 8.62 71.98 0.62 -4.69 16 2 C 0.03 1.49 1.79 -12.29 -0.02 1.47 16 3 H 0.04 1.92 6.61 -2.38 -0.02 1.91 16 4 C -0.53 -30.43 8.32 25.60 0.21 -30.21 16 5 H 0.04 2.69 7.09 -2.91 -0.02 2.67 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -50.56 11.39 21.45 0.24 -50.32 16 8 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 9 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.53 24.43 6.30 87.66 0.55 24.99 16 13 O -0.56 -28.45 10.80 -3.02 -0.03 -28.48 16 14 N -0.60 -22.24 2.87 -771.87 -2.21 -24.45 16 15 C 0.08 2.43 5.62 86.30 0.48 2.91 16 16 C 0.08 1.96 3.34 30.69 0.10 2.06 16 17 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 18 C -0.14 -2.59 9.56 71.98 0.69 -1.90 16 19 O -0.38 -9.83 10.40 -148.98 -1.55 -11.37 16 20 C 0.08 1.84 6.16 71.79 0.44 2.28 16 21 C 0.10 3.12 1.23 3.49 0.00 3.12 16 22 C -0.13 -3.54 7.43 30.96 0.23 -3.31 16 23 C -0.13 -4.36 7.53 31.19 0.23 -4.12 16 24 C -0.17 -5.43 6.73 30.95 0.21 -5.22 16 25 H 0.07 3.73 6.26 -2.39 -0.01 3.71 16 26 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.04 1.61 7.63 -2.39 -0.02 1.59 16 28 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.09 3.13 5.27 -2.38 -0.01 3.12 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.13 2.41 7.92 -2.39 -0.02 2.39 16 35 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.12 2.46 7.94 -2.39 -0.02 2.44 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.04 1.69 6.91 -2.39 -0.02 1.68 16 40 H 0.10 2.50 8.10 -2.39 -0.02 2.48 16 41 H 0.11 4.33 4.71 -67.60 -0.32 4.01 16 Total: -1.00 -65.07 314.27 3.38 -61.68 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.70 Total: 17.06 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 4.21 Total: -10.89 kcal Atomic # 7 Polarization: -72.80 SS G_CDS: -1.97 Total: -74.77 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.58 Total: -39.86 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.07 3.38 -61.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597817720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.906 kcal (2) G-P(sol) polarization free energy of solvation -65.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds