Wall clock time and date at job start Mon Mar 30 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46853 * 2 1 4 4 C 1.50700 * 109.47310 * 119.99948 * 2 1 3 5 5 H 1.08002 * 120.00181 * 119.99812 * 4 2 1 6 6 C 1.37879 * 120.00129 * 300.00585 * 4 2 1 7 7 N 1.31515 * 119.99904 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 59.99343 * 8 6 4 10 10 H 1.48498 * 109.47101 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47179 * 299.99477 * 8 6 4 12 12 C 1.50700 * 109.47166 * 239.99914 * 2 1 3 13 13 O 1.21281 * 120.00248 * 263.36914 * 12 2 1 14 14 N 1.34780 * 119.99576 * 83.37037 * 12 2 1 15 15 C 1.47421 * 121.28323 * 2.40339 * 14 12 2 16 16 C 1.53286 * 108.23128 * 131.84793 * 15 14 12 17 17 H 1.09001 * 109.45086 * 294.13401 * 16 15 14 18 18 C 1.53006 * 109.44801 * 174.18789 * 16 15 14 19 19 O 1.42913 * 109.59944 * 54.14581 * 16 15 14 20 20 C 1.43181 * 114.15123 * 295.74982 * 19 16 15 21 21 C 1.46697 * 121.27506 * 182.11864 * 14 12 2 22 22 C 1.53206 * 113.67578 * 95.39913 * 21 14 12 23 23 C 1.53885 * 86.90738 * 270.16255 * 22 21 14 24 24 C 1.53172 * 113.72403 * 357.10356 * 21 14 12 25 25 H 1.08999 * 109.47405 * 66.02294 * 1 2 3 26 26 H 1.08997 * 109.46938 * 306.01871 * 1 2 3 27 27 H 1.09001 * 109.46994 * 186.02186 * 1 2 3 28 28 H 0.97000 * 120.00268 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.71441 * 251.53571 * 15 14 12 30 30 H 1.09003 * 109.71118 * 12.16594 * 15 14 12 31 31 H 1.08992 * 109.47150 * 60.00303 * 18 16 15 32 32 H 1.08998 * 109.46738 * 180.02562 * 18 16 15 33 33 H 1.09000 * 109.46797 * 299.99649 * 18 16 15 34 34 H 1.08996 * 109.57054 * 179.65837 * 20 19 16 35 35 H 1.09006 * 109.56930 * 300.02724 * 20 19 16 36 36 H 1.09004 * 113.63492 * 24.66403 * 22 21 14 37 37 H 1.08998 * 113.64716 * 155.66015 * 22 21 14 38 38 H 1.09001 * 113.60152 * 220.42618 * 23 22 21 39 39 H 1.09002 * 113.67240 * 89.58127 * 23 22 21 40 40 H 1.09001 * 113.64401 * 204.30086 * 24 21 14 41 41 H 1.09005 * 113.63938 * 335.19524 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1210 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8258 -2.5203 4.0078 12 6 2.0323 -0.7104 -1.2305 13 8 2.3488 -1.8796 -1.1689 14 7 2.1299 -0.0464 -2.3993 15 6 1.8029 1.3879 -2.4944 16 6 2.9400 2.0903 -3.2449 17 1 3.8513 2.0441 -2.6486 18 6 2.5633 3.5533 -3.4870 19 8 3.1593 1.4414 -4.4992 20 6 3.6132 0.0881 -4.3872 21 6 2.5715 -0.7218 -3.6243 22 6 1.4187 -1.2200 -4.5019 23 6 1.4913 -2.5350 -3.7060 24 6 2.9617 -2.1879 -3.4133 25 1 -0.3634 0.4176 -0.9390 26 1 -0.3633 0.6043 0.8312 27 1 -0.3633 -1.0220 0.1078 28 1 0.7093 1.1617 3.4844 29 1 0.8679 1.5165 -3.0399 30 1 1.7066 1.8102 -1.4942 31 1 2.3983 4.0491 -2.5305 32 1 3.3715 4.0530 -4.0211 33 1 1.6515 3.5999 -4.0826 34 1 3.7498 -0.3348 -5.3824 35 1 4.5587 0.0637 -3.8452 36 1 0.4887 -0.6708 -4.3549 37 1 1.6854 -1.3300 -5.5530 38 1 1.3675 -3.4255 -4.3223 39 1 0.8600 -2.5442 -2.8175 40 1 3.6577 -2.5671 -4.1616 41 1 3.2713 -2.4153 -2.3932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597817721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:32 Heat of formation + Delta-G solvation = -39.077437 kcal Electronic energy + Delta-G solvation = -22253.495678 eV Core-core repulsion = 19135.097473 eV Total energy + Delta-G solvation = -3118.398205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87458 -37.99075 -36.93953 -34.19717 -33.51699 -31.75340 -30.33212 -27.67363 -26.09489 -25.30429 -25.16579 -23.54644 -22.13027 -21.02788 -19.64270 -17.87845 -16.80203 -16.36262 -15.93339 -15.49385 -15.32764 -14.70194 -14.66167 -14.26806 -13.68941 -13.49757 -13.18484 -12.80448 -12.52045 -12.26349 -12.13264 -11.94334 -11.55641 -11.46167 -11.29812 -10.98475 -10.86899 -10.78209 -10.65583 -10.44284 -10.29810 -10.25683 -10.09162 -9.93020 -9.63420 -9.01555 -8.47172 -7.99894 -7.85491 -6.07754 -4.10835 3.32806 3.35761 3.36380 3.44220 3.58621 3.79114 4.42409 4.77440 4.89045 4.91535 5.03198 5.17593 5.21845 5.26080 5.29473 5.55711 5.60970 5.62032 5.68399 5.82151 5.82599 5.93164 5.97633 6.01676 6.10368 6.20539 6.23044 6.52476 6.61214 6.71057 6.71444 6.81211 6.95006 7.24673 7.34474 7.41194 7.71061 7.93646 8.05054 8.32290 8.94572 9.20398 9.54142 11.00067 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.006795 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.435546 B = 4119.488312 C = 4823.695629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.502 4.502 5 H 0.070 0.930 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.530 3.470 13 O -0.529 6.529 14 N -0.606 5.606 15 C 0.083 3.917 16 C 0.072 3.928 17 H 0.062 0.938 18 C -0.142 4.142 19 O -0.381 6.381 20 C 0.071 3.929 21 C 0.113 3.887 22 C -0.142 4.142 23 C -0.127 4.127 24 C -0.170 4.170 25 H 0.011 0.989 26 H 0.090 0.910 27 H 0.035 0.965 28 H 0.262 0.738 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 2.861 -12.982 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.540 4.540 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.324 3.676 13 O -0.406 6.406 14 N -0.341 5.341 15 C -0.040 4.040 16 C 0.014 3.986 17 H 0.080 0.920 18 C -0.199 4.199 19 O -0.300 6.300 20 C -0.006 4.006 21 C 0.027 3.973 22 C -0.181 4.181 23 C -0.165 4.165 24 C -0.206 4.206 25 H 0.030 0.970 26 H 0.109 0.891 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.046 2.432 -12.937 13.321 hybrid contribution 0.233 -0.450 0.890 1.025 sum 2.279 1.981 -12.046 12.419 Atomic orbital electron populations 1.21676 0.96068 1.01043 0.99699 1.18915 0.94299 0.96503 0.89169 0.93560 1.21028 1.31392 1.12595 0.89012 0.91199 1.24929 0.95028 0.95020 0.99060 1.69865 1.36883 1.22953 1.23729 0.86515 0.79191 0.79827 0.81670 1.20246 1.21320 1.20135 1.22030 0.74896 0.87145 0.83579 1.90218 1.48926 1.17385 1.84095 1.47980 1.68603 1.09642 1.07889 1.22499 0.97564 0.81100 1.02880 1.22475 0.97710 0.92943 0.85520 0.91955 1.21719 1.02365 0.93083 1.02763 1.87917 1.87449 1.25523 1.29062 1.22760 0.95533 0.81896 1.00434 1.21655 0.95298 0.93683 0.86704 1.23297 0.98847 0.97772 0.98200 1.22738 0.97913 0.96082 0.99746 1.23967 0.97164 0.92145 1.07348 0.97044 0.89100 0.94576 0.92839 0.91406 0.87537 0.90526 0.91797 0.91726 0.88201 0.92917 0.91689 0.90031 0.92494 0.89869 0.91664 0.83962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.86 37.16 0.33 -2.62 16 2 C 0.03 0.78 1.87 -92.92 -0.17 0.61 16 3 H 0.05 1.14 6.21 -51.93 -0.32 0.82 16 4 C -0.50 -13.89 8.34 -34.44 -0.29 -14.18 16 5 H 0.07 2.03 7.00 -52.49 -0.37 1.66 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.62 11.39 55.43 0.63 -23.99 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.53 11.87 6.35 -10.98 -0.07 11.80 16 13 O -0.53 -12.87 10.68 5.56 0.06 -12.81 16 14 N -0.61 -11.16 2.87 -157.90 -0.45 -11.61 16 15 C 0.08 1.31 5.54 -3.39 -0.02 1.29 16 16 C 0.07 1.01 3.34 -26.58 -0.09 0.92 16 17 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.14 -1.56 9.56 37.16 0.36 -1.20 16 19 O -0.38 -5.57 10.40 -35.23 -0.37 -5.94 16 20 C 0.07 1.00 6.16 36.86 0.23 1.23 16 21 C 0.11 1.83 1.23 -131.82 -0.16 1.67 16 22 C -0.14 -2.10 7.43 -26.16 -0.19 -2.30 16 23 C -0.13 -2.08 7.53 -25.81 -0.19 -2.27 16 24 C -0.17 -2.83 6.72 -26.18 -0.18 -3.00 16 25 H 0.01 0.22 7.86 -51.93 -0.41 -0.19 16 26 H 0.09 2.27 6.26 -51.93 -0.32 1.95 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.77 5.58 -51.93 -0.29 1.48 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.17 7.92 -51.93 -0.41 0.76 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.02 7.94 -51.93 -0.41 0.61 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.61 6.91 -51.93 -0.36 1.25 16 40 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.14 2.90 4.72 -56.01 -0.26 2.63 16 LS Contribution 314.50 15.07 4.74 4.74 Total: -1.00 -29.21 314.50 -7.48 -36.69 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.52 Total: 2.95 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.55 Total: -6.50 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.18 Total: -35.61 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.31 Total: -18.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.21 -7.48 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597817721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.391 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds