Wall clock time and date at job start Mon Mar 30 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46853 * 2 1 4 4 C 1.50700 * 109.47310 * 119.99948 * 2 1 3 5 5 H 1.08002 * 120.00181 * 119.99812 * 4 2 1 6 6 C 1.37879 * 120.00129 * 300.00585 * 4 2 1 7 7 N 1.31515 * 119.99904 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00110 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47136 * 59.99343 * 8 6 4 10 10 H 1.48498 * 109.47101 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47179 * 299.99477 * 8 6 4 12 12 C 1.50700 * 109.47166 * 239.99914 * 2 1 3 13 13 O 1.21281 * 120.00248 * 263.36914 * 12 2 1 14 14 N 1.34780 * 119.99576 * 83.37037 * 12 2 1 15 15 C 1.47421 * 121.28323 * 2.40339 * 14 12 2 16 16 C 1.53286 * 108.23128 * 131.84793 * 15 14 12 17 17 H 1.09001 * 109.45086 * 294.13401 * 16 15 14 18 18 C 1.53006 * 109.44801 * 174.18789 * 16 15 14 19 19 O 1.42913 * 109.59944 * 54.14581 * 16 15 14 20 20 C 1.43181 * 114.15123 * 295.74982 * 19 16 15 21 21 C 1.46697 * 121.27506 * 182.11864 * 14 12 2 22 22 C 1.53206 * 113.67578 * 95.39913 * 21 14 12 23 23 C 1.53885 * 86.90738 * 270.16255 * 22 21 14 24 24 C 1.53172 * 113.72403 * 357.10356 * 21 14 12 25 25 H 1.08999 * 109.47405 * 66.02294 * 1 2 3 26 26 H 1.08997 * 109.46938 * 306.01871 * 1 2 3 27 27 H 1.09001 * 109.46994 * 186.02186 * 1 2 3 28 28 H 0.97000 * 120.00268 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.71441 * 251.53571 * 15 14 12 30 30 H 1.09003 * 109.71118 * 12.16594 * 15 14 12 31 31 H 1.08992 * 109.47150 * 60.00303 * 18 16 15 32 32 H 1.08998 * 109.46738 * 180.02562 * 18 16 15 33 33 H 1.09000 * 109.46797 * 299.99649 * 18 16 15 34 34 H 1.08996 * 109.57054 * 179.65837 * 20 19 16 35 35 H 1.09006 * 109.56930 * 300.02724 * 20 19 16 36 36 H 1.09004 * 113.63492 * 24.66403 * 22 21 14 37 37 H 1.08998 * 113.64716 * 155.66015 * 22 21 14 38 38 H 1.09001 * 113.60152 * 220.42618 * 23 22 21 39 39 H 1.09002 * 113.67240 * 89.58127 * 23 22 21 40 40 H 1.09001 * 113.64401 * 204.30086 * 24 21 14 41 41 H 1.09005 * 113.63938 * 335.19524 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9434 0.8301 2.6034 8 14 2.3213 -1.1204 4.0080 9 1 3.8063 -1.1210 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8258 -2.5203 4.0078 12 6 2.0323 -0.7104 -1.2305 13 8 2.3488 -1.8796 -1.1689 14 7 2.1299 -0.0464 -2.3993 15 6 1.8029 1.3879 -2.4944 16 6 2.9400 2.0903 -3.2449 17 1 3.8513 2.0441 -2.6486 18 6 2.5633 3.5533 -3.4870 19 8 3.1593 1.4414 -4.4992 20 6 3.6132 0.0881 -4.3872 21 6 2.5715 -0.7218 -3.6243 22 6 1.4187 -1.2200 -4.5019 23 6 1.4913 -2.5350 -3.7060 24 6 2.9617 -2.1879 -3.4133 25 1 -0.3634 0.4176 -0.9390 26 1 -0.3633 0.6043 0.8312 27 1 -0.3633 -1.0220 0.1078 28 1 0.7093 1.1617 3.4844 29 1 0.8679 1.5165 -3.0399 30 1 1.7066 1.8102 -1.4942 31 1 2.3983 4.0491 -2.5305 32 1 3.3715 4.0530 -4.0211 33 1 1.6515 3.5999 -4.0826 34 1 3.7498 -0.3348 -5.3824 35 1 4.5587 0.0637 -3.8452 36 1 0.4887 -0.6708 -4.3549 37 1 1.6854 -1.3300 -5.5530 38 1 1.3675 -3.4255 -4.3223 39 1 0.8600 -2.5442 -2.8175 40 1 3.6577 -2.5671 -4.1616 41 1 3.2713 -2.4153 -2.3932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597817721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:31 Heat of formation + Delta-G solvation = -56.807858 kcal Electronic energy + Delta-G solvation = -22254.264527 eV Core-core repulsion = 19135.097473 eV Total energy + Delta-G solvation = -3119.167053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.26586 -39.42077 -38.29710 -35.89039 -35.25233 -32.91918 -32.26963 -28.87459 -27.34145 -27.28441 -26.49791 -25.12298 -23.56373 -22.22075 -21.22230 -19.36771 -18.34710 -18.12456 -17.35798 -16.87036 -16.67237 -16.54541 -15.99213 -15.64178 -15.14835 -14.87019 -14.71257 -14.43115 -14.11335 -13.71086 -13.24777 -13.11701 -12.97267 -12.93684 -12.76660 -12.68138 -12.55896 -12.47019 -12.23681 -12.04583 -11.91431 -11.79445 -11.51757 -11.26293 -11.05963 -10.93176 -10.55738 -9.54685 -9.37944 -8.17578 -6.27484 1.39546 1.40985 1.49086 1.86019 1.96928 2.42810 2.70307 3.12373 3.57290 3.61829 3.70425 3.83975 3.99040 4.04358 4.12665 4.26699 4.39805 4.46166 4.49081 4.62987 4.67518 4.75434 4.78891 4.85306 4.89480 4.91259 4.98353 5.00446 5.03446 5.21087 5.28176 5.33514 5.44263 5.45887 5.69289 5.85896 5.97141 6.13030 6.15602 6.55504 6.78386 7.38277 7.52837 8.88573 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021592 B = 0.006795 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.435546 B = 4119.488312 C = 4823.695629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.029 3.971 3 H 0.041 0.959 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.527 3.473 13 O -0.558 6.558 14 N -0.603 5.603 15 C 0.078 3.922 16 C 0.075 3.925 17 H 0.052 0.948 18 C -0.136 4.136 19 O -0.380 6.380 20 C 0.074 3.926 21 C 0.101 3.899 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.170 4.170 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.266 0.734 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.117 0.883 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.098 0.902 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 3.616 -14.968 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.008 3.992 3 H 0.059 0.941 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.319 3.681 13 O -0.438 6.438 14 N -0.336 5.336 15 C -0.044 4.044 16 C 0.016 3.984 17 H 0.070 0.930 18 C -0.193 4.193 19 O -0.299 6.299 20 C -0.003 4.003 21 C 0.015 3.985 22 C -0.163 4.163 23 C -0.168 4.168 24 C -0.207 4.207 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.371 3.222 -14.951 15.477 hybrid contribution 0.140 -0.697 1.484 1.645 sum 2.511 2.525 -13.467 13.930 Atomic orbital electron populations 1.21461 0.95494 0.99614 1.00359 1.18823 0.94765 0.96008 0.89603 0.94088 1.21179 1.31939 1.12469 0.91026 0.93575 1.25563 0.95133 0.95693 1.01310 1.69937 1.36997 1.23435 1.24445 0.85677 0.78748 0.78653 0.78964 1.19962 1.19893 1.20461 1.21575 0.75293 0.86807 0.84430 1.90265 1.50177 1.18367 1.84942 1.47901 1.67410 1.10653 1.07675 1.22684 0.99230 0.79671 1.02811 1.22505 0.96343 0.94377 0.85134 0.92987 1.21717 1.03151 0.90863 1.03594 1.87929 1.87308 1.25667 1.29022 1.22873 0.94242 0.81461 1.01736 1.21963 0.96820 0.93728 0.85975 1.23258 0.97754 0.95845 0.99476 1.22657 0.96977 0.98264 0.98910 1.23836 0.97927 0.92981 1.05953 0.94290 0.90835 0.96366 0.92513 0.90049 0.88814 0.89728 0.90559 0.90910 0.84826 0.93407 0.92400 0.86480 0.90274 0.93844 0.88375 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 8.86 71.98 0.64 -4.66 16 2 C 0.03 1.46 1.87 -12.29 -0.02 1.44 16 3 H 0.04 2.09 6.21 -2.39 -0.01 2.08 16 4 C -0.53 -30.30 8.34 25.60 0.21 -30.09 16 5 H 0.05 2.81 7.00 -2.91 -0.02 2.79 16 6 C 0.02 1.26 5.30 84.65 0.45 1.70 16 7 N -0.91 -50.54 11.39 21.45 0.24 -50.30 16 8 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.53 24.33 6.35 87.66 0.56 24.89 16 13 O -0.56 -28.44 10.68 -3.03 -0.03 -28.48 16 14 N -0.60 -22.09 2.87 -771.86 -2.21 -24.30 16 15 C 0.08 2.41 5.54 86.30 0.48 2.89 16 16 C 0.07 1.95 3.34 30.69 0.10 2.06 16 17 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 18 C -0.14 -2.63 9.56 71.98 0.69 -1.94 16 19 O -0.38 -9.96 10.40 -148.98 -1.55 -11.51 16 20 C 0.07 1.86 6.16 71.79 0.44 2.30 16 21 C 0.10 3.08 1.23 3.50 0.00 3.09 16 22 C -0.13 -3.34 7.43 30.96 0.23 -3.11 16 23 C -0.13 -4.12 7.53 31.19 0.23 -3.89 16 24 C -0.17 -5.50 6.72 30.95 0.21 -5.29 16 25 H 0.04 1.58 7.86 -2.39 -0.02 1.56 16 26 H 0.07 3.75 6.26 -2.39 -0.01 3.74 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.09 3.12 5.58 -2.39 -0.01 3.11 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.13 2.47 7.92 -2.39 -0.02 2.45 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.12 2.35 7.94 -2.39 -0.02 2.33 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.71 6.91 -2.39 -0.02 1.70 16 40 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 41 H 0.10 4.30 4.72 -67.11 -0.32 3.98 16 Total: -1.00 -64.72 314.50 3.40 -61.32 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.70 Total: 17.24 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 4.22 Total: -10.62 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -1.97 Total: -74.60 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.58 Total: -39.99 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.72 3.40 -61.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597817721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.515 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds