Wall clock time and date at job start Mon Mar 30 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46694 * 2 1 4 4 C 1.52997 * 109.46828 * 239.99536 * 2 1 3 5 5 C 1.50699 * 109.46927 * 65.00206 * 4 2 1 6 6 O 1.21284 * 120.00417 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99668 * 179.97438 * 5 4 2 8 8 C 1.47583 * 134.48847 * 179.97438 * 7 5 4 9 9 C 1.53947 * 86.11463 * 155.36171 * 8 7 5 10 10 C 1.50700 * 113.74156 * 137.95167 * 9 8 7 11 11 H 1.08002 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00147 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00061 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00136 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46749 * 60.00520 * 14 12 10 16 16 H 1.48500 * 109.47107 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47282 * 300.00630 * 14 12 10 18 18 C 1.47573 * 134.49478 * 0.02562 * 7 5 4 19 19 C 1.53002 * 109.47157 * 119.99837 * 2 1 3 20 20 H 1.08997 * 109.82449 * 60.56626 * 19 2 1 21 21 C 1.54385 * 109.82888 * 299.58920 * 19 2 1 22 22 C 1.55308 * 102.24998 * 219.13059 * 21 19 2 23 23 C 1.54945 * 100.94116 * 34.13450 * 22 21 19 24 24 O 1.43229 * 109.82995 * 181.45576 * 19 2 1 25 25 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47234 * 300.00239 * 1 2 3 27 27 H 1.08994 * 109.47141 * 60.00174 * 1 2 3 28 28 H 1.08997 * 109.47535 * 305.00098 * 4 2 1 29 29 H 1.09010 * 109.46701 * 184.99790 * 4 2 1 30 30 H 1.08996 * 113.77114 * 41.06515 * 8 7 5 31 31 H 1.08993 * 113.87279 * 269.67669 * 8 7 5 32 32 H 1.08999 * 113.74208 * 269.26384 * 9 8 7 33 33 H 0.96996 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.09003 * 113.77162 * 90.33892 * 18 7 5 35 35 H 1.09004 * 113.77283 * 318.93865 * 18 7 5 36 36 H 1.09008 * 110.84763 * 337.31759 * 21 19 2 37 37 H 1.08994 * 110.85337 * 100.93762 * 21 19 2 38 38 H 1.08992 * 111.12590 * 276.21103 * 22 21 19 39 39 H 1.09005 * 111.12547 * 152.05057 * 22 21 19 40 40 H 1.09001 * 110.30639 * 204.63934 * 23 22 21 41 41 H 1.08999 * 110.39691 * 82.51699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4765 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3917 -3.7001 8 6 1.7721 0.0940 -5.0773 9 6 3.0316 -0.7114 -5.4445 10 6 2.9117 -1.4664 -6.7433 11 1 2.0003 -1.4080 -7.3197 12 6 3.9661 -2.2307 -7.1962 13 7 5.0762 -2.3014 -6.4946 14 14 3.8173 -3.1670 -8.8058 15 1 3.5659 -2.2104 -9.9134 16 1 5.0783 -3.9066 -9.0666 17 1 2.6892 -4.1287 -8.7166 18 6 2.7255 -1.5661 -4.2007 19 6 2.0401 -0.7212 1.2493 20 1 1.6882 -1.7528 1.2501 21 6 1.5385 0.0061 2.5153 22 6 2.7718 -0.0801 3.4553 23 6 3.9300 0.0219 2.4310 24 8 3.4719 -0.6961 1.2743 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -1.7199 -1.2951 29 1 3.1264 -0.7995 -1.2055 30 1 1.8925 1.1718 -5.1867 31 1 0.8599 -0.2812 -5.5411 32 1 3.9562 -0.1394 -5.3677 33 1 5.8178 -2.8394 -6.8131 34 1 2.0926 -2.4295 -4.4059 35 1 3.6073 -1.8142 -3.6100 36 1 1.2914 1.0445 2.2939 37 1 0.6837 -0.5133 2.9483 38 1 2.7973 -1.0332 3.9835 39 1 2.7916 0.7553 4.1551 40 1 4.8313 -0.4419 2.8318 41 1 4.1223 1.0644 2.1777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598026099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:01 Heat of formation + Delta-G solvation = -67.228925 kcal Electronic energy + Delta-G solvation = -20597.763549 eV Core-core repulsion = 17478.144604 eV Total energy + Delta-G solvation = -3119.618945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96648 -39.13690 -37.11907 -34.46491 -32.64534 -32.23022 -29.74739 -28.29910 -27.14250 -25.06641 -24.89477 -23.16424 -21.82836 -20.42161 -19.75840 -17.98458 -16.93242 -16.81282 -16.44478 -15.81598 -15.28137 -14.72522 -14.65813 -14.38785 -14.08375 -13.68742 -13.28573 -12.94804 -12.42436 -12.30177 -12.07919 -11.95266 -11.74137 -11.54681 -11.37576 -11.31375 -11.16525 -10.91737 -10.87323 -10.78176 -10.69107 -10.61391 -10.37435 -9.57786 -9.45451 -9.23102 -8.81318 -8.54675 -7.76794 -6.15186 -4.20962 3.26830 3.29344 3.32316 3.34519 3.64675 3.76901 4.33292 4.35418 4.58624 4.70545 4.97911 5.02791 5.05462 5.15139 5.28536 5.31535 5.48647 5.53319 5.57180 5.59441 5.70634 5.79516 5.84008 5.90656 6.04050 6.14908 6.18606 6.29274 6.34012 6.43957 6.46374 6.52077 6.65584 6.74239 6.88112 7.00035 7.58634 7.82303 8.20590 8.61671 8.82259 8.87066 9.45668 10.94400 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.003775 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.598827 B = 7415.981077 C = 7977.527056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.079 0.921 4 C -0.127 4.127 5 C 0.525 3.475 6 O -0.569 6.569 7 N -0.641 5.641 8 C 0.101 3.899 9 C 0.034 3.966 10 C -0.520 4.520 11 H 0.062 0.938 12 C 0.068 3.932 13 N -0.886 5.886 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.103 3.897 19 C 0.084 3.916 20 H 0.080 0.920 21 C -0.149 4.149 22 C -0.158 4.158 23 C 0.049 3.951 24 O -0.375 6.375 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 1.514 17.159 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.098 0.902 4 C -0.166 4.166 5 C 0.315 3.685 6 O -0.450 6.450 7 N -0.374 5.374 8 C -0.020 4.020 9 C 0.014 3.986 10 C -0.559 4.559 11 H 0.080 0.920 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.019 4.019 19 C 0.026 3.974 20 H 0.097 0.903 21 C -0.186 4.186 22 C -0.195 4.195 23 C -0.027 4.027 24 O -0.294 6.294 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.658 1.930 17.253 17.975 hybrid contribution -0.085 -0.608 -0.628 0.878 sum -4.744 1.322 16.625 17.339 Atomic orbital electron populations 1.21933 0.94265 1.01466 1.03177 1.21226 0.96273 1.00045 0.92461 0.90216 1.21553 1.03479 0.99517 0.92091 1.20327 0.78704 0.85627 0.83830 1.90570 1.42136 1.25809 1.86485 1.50479 1.54690 1.27571 1.04664 1.23456 1.00848 0.99175 0.78569 1.20504 0.92768 0.92467 0.92823 1.20947 1.00581 1.28812 1.05515 0.91986 1.25022 0.94998 0.96386 0.97132 1.69940 1.04258 1.39705 1.38398 0.86608 0.77416 0.79982 0.83732 1.20091 1.21229 1.20102 1.23712 0.93380 0.89272 0.95555 1.22855 0.80905 0.99284 0.94345 0.90262 1.23179 0.98428 1.02025 0.95001 1.23275 0.95006 1.02898 0.98357 1.23358 0.97156 0.96892 0.85334 1.88465 1.20209 1.75675 1.45079 0.93353 0.93064 0.90042 0.89697 0.88564 0.92248 0.91000 0.91774 0.92596 0.90812 0.91777 0.90174 0.90105 0.90504 0.90123 0.89913 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.70 37.16 0.32 -1.65 16 2 C -0.08 -1.13 1.68 -90.62 -0.15 -1.28 16 3 H 0.08 1.24 7.96 -51.93 -0.41 0.83 16 4 C -0.13 -2.04 4.86 -27.88 -0.14 -2.17 16 5 C 0.52 10.48 7.77 -10.98 -0.09 10.40 16 6 O -0.57 -12.55 14.69 5.55 0.08 -12.47 16 7 N -0.64 -13.45 3.61 -178.41 -0.64 -14.10 16 8 C 0.10 2.18 8.39 -2.97 -0.02 2.16 16 9 C 0.03 0.80 3.62 -90.83 -0.33 0.47 16 10 C -0.52 -13.43 8.77 -34.44 -0.30 -13.73 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -24.34 13.27 55.43 0.74 -23.60 16 14 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.10 2.23 8.17 -2.96 -0.02 2.20 16 19 C 0.08 0.98 3.08 -26.00 -0.08 0.90 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 21 C -0.15 -1.35 5.46 -24.78 -0.14 -1.49 16 22 C -0.16 -1.26 7.16 -24.48 -0.18 -1.44 16 23 C 0.05 0.49 7.78 38.18 0.30 0.79 16 24 O -0.37 -5.03 10.34 -35.23 -0.36 -5.39 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.56 7.06 -51.93 -0.37 0.19 16 27 H 0.08 1.30 5.95 -51.93 -0.31 1.00 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.10 1.60 7.60 -51.92 -0.39 1.21 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.07 1.49 8.09 -51.93 -0.42 1.06 16 32 H 0.06 1.67 8.13 -51.93 -0.42 1.25 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.07 1.56 8.09 -51.93 -0.42 1.14 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.08 0.74 7.57 -51.92 -0.39 0.35 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -29.15 331.65 -8.04 -37.19 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.91 Total: 1.30 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -0.92 Total: -3.14 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.09 Total: -37.70 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.28 Total: -17.86 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.15 -8.04 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.034 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds