Wall clock time and date at job start Mon Mar 30 2020 05:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46694 * 2 1 4 4 C 1.52997 * 109.46828 * 239.99536 * 2 1 3 5 5 C 1.50699 * 109.46927 * 65.00206 * 4 2 1 6 6 O 1.21284 * 120.00417 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99668 * 179.97438 * 5 4 2 8 8 C 1.47583 * 134.48847 * 179.97438 * 7 5 4 9 9 C 1.53947 * 86.11463 * 155.36171 * 8 7 5 10 10 C 1.50700 * 113.74156 * 137.95167 * 9 8 7 11 11 H 1.08002 * 119.99998 * 0.02562 * 10 9 8 12 12 C 1.37878 * 120.00147 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00061 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00136 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46749 * 60.00520 * 14 12 10 16 16 H 1.48500 * 109.47107 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47282 * 300.00630 * 14 12 10 18 18 C 1.47573 * 134.49478 * 0.02562 * 7 5 4 19 19 C 1.53002 * 109.47157 * 119.99837 * 2 1 3 20 20 H 1.08997 * 109.82449 * 60.56626 * 19 2 1 21 21 C 1.54385 * 109.82888 * 299.58920 * 19 2 1 22 22 C 1.55308 * 102.24998 * 219.13059 * 21 19 2 23 23 C 1.54945 * 100.94116 * 34.13450 * 22 21 19 24 24 O 1.43229 * 109.82995 * 181.45576 * 19 2 1 25 25 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47234 * 300.00239 * 1 2 3 27 27 H 1.08994 * 109.47141 * 60.00174 * 1 2 3 28 28 H 1.08997 * 109.47535 * 305.00098 * 4 2 1 29 29 H 1.09010 * 109.46701 * 184.99790 * 4 2 1 30 30 H 1.08996 * 113.77114 * 41.06515 * 8 7 5 31 31 H 1.08993 * 113.87279 * 269.67669 * 8 7 5 32 32 H 1.08999 * 113.74208 * 269.26384 * 9 8 7 33 33 H 0.96996 * 120.00156 * 179.97438 * 13 12 10 34 34 H 1.09003 * 113.77162 * 90.33892 * 18 7 5 35 35 H 1.09004 * 113.77283 * 318.93865 * 18 7 5 36 36 H 1.09008 * 110.84763 * 337.31759 * 21 19 2 37 37 H 1.08994 * 110.85337 * 100.93762 * 21 19 2 38 38 H 1.08992 * 111.12590 * 276.21103 * 22 21 19 39 39 H 1.09005 * 111.12547 * 152.05057 * 22 21 19 40 40 H 1.09001 * 110.30639 * 204.63934 * 23 22 21 41 41 H 1.08999 * 110.39691 * 82.51699 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4765 6 8 1.0109 1.0869 -2.3633 7 7 1.9853 -0.3917 -3.7001 8 6 1.7721 0.0940 -5.0773 9 6 3.0316 -0.7114 -5.4445 10 6 2.9117 -1.4664 -6.7433 11 1 2.0003 -1.4080 -7.3197 12 6 3.9661 -2.2307 -7.1962 13 7 5.0762 -2.3014 -6.4946 14 14 3.8173 -3.1670 -8.8058 15 1 3.5659 -2.2104 -9.9134 16 1 5.0783 -3.9066 -9.0666 17 1 2.6892 -4.1287 -8.7166 18 6 2.7255 -1.5661 -4.2007 19 6 2.0401 -0.7212 1.2493 20 1 1.6882 -1.7528 1.2501 21 6 1.5385 0.0061 2.5153 22 6 2.7718 -0.0801 3.4553 23 6 3.9300 0.0219 2.4310 24 8 3.4719 -0.6961 1.2743 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -1.7199 -1.2951 29 1 3.1264 -0.7995 -1.2055 30 1 1.8925 1.1718 -5.1867 31 1 0.8599 -0.2812 -5.5411 32 1 3.9562 -0.1394 -5.3677 33 1 5.8178 -2.8394 -6.8131 34 1 2.0926 -2.4295 -4.4059 35 1 3.6073 -1.8142 -3.6100 36 1 1.2914 1.0445 2.2939 37 1 0.6837 -0.5133 2.9483 38 1 2.7973 -1.0332 3.9835 39 1 2.7916 0.7553 4.1551 40 1 4.8313 -0.4419 2.8318 41 1 4.1223 1.0644 2.1777 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598026099.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:01 Heat of formation + Delta-G solvation = -84.072146 kcal Electronic energy + Delta-G solvation = -20598.493926 eV Core-core repulsion = 17478.144604 eV Total energy + Delta-G solvation = -3120.349322 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24548 -40.43301 -38.77643 -35.64989 -34.62589 -33.02296 -31.36037 -29.41899 -28.41779 -26.84688 -26.65694 -24.18936 -22.62757 -21.94856 -20.98248 -19.63501 -18.73427 -17.96310 -17.75320 -16.97319 -16.75857 -16.33820 -16.26872 -15.55148 -15.51969 -14.71609 -14.48583 -14.15172 -13.95392 -13.66925 -13.45121 -13.31180 -13.19734 -12.84725 -12.74719 -12.66277 -12.56993 -12.25036 -12.20684 -12.12311 -11.82899 -11.69274 -11.61553 -11.34619 -11.13768 -10.64853 -10.50699 -10.32462 -9.51146 -8.15540 -6.27411 1.49057 1.49518 1.57338 1.68163 2.04238 2.46753 2.93176 3.14955 3.47562 3.61495 3.81091 3.99449 4.07242 4.08490 4.25794 4.31876 4.40983 4.44671 4.50634 4.57017 4.65073 4.66252 4.70087 4.81441 4.84594 4.86795 4.91342 4.95364 4.96675 5.03587 5.07471 5.16667 5.25443 5.37168 5.45577 5.59463 5.81538 6.15459 6.23085 6.80472 6.93559 7.21937 7.42763 8.94059 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.003775 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.598827 B = 7415.981077 C = 7977.527056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.057 0.943 4 C -0.119 4.119 5 C 0.520 3.480 6 O -0.590 6.590 7 N -0.644 5.644 8 C 0.107 3.893 9 C 0.022 3.978 10 C -0.533 4.533 11 H 0.066 0.934 12 C 0.021 3.979 13 N -0.919 5.919 14 Si 0.959 3.041 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.118 3.882 19 C 0.083 3.917 20 H 0.089 0.911 21 C -0.146 4.146 22 C -0.148 4.148 23 C 0.037 3.963 24 O -0.405 6.405 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.641 0.564 18.429 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.159 4.159 5 C 0.312 3.688 6 O -0.473 6.473 7 N -0.378 5.378 8 C -0.015 4.015 9 C 0.003 3.997 10 C -0.571 4.571 11 H 0.084 0.916 12 C -0.179 4.179 13 N -0.557 5.557 14 Si 0.784 3.216 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.004 4.004 19 C 0.026 3.974 20 H 0.107 0.893 21 C -0.183 4.183 22 C -0.185 4.185 23 C -0.039 4.039 24 O -0.325 6.325 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.705 0.989 18.535 19.418 hybrid contribution 0.257 -0.236 -1.015 1.073 sum -5.448 0.753 17.520 18.363 Atomic orbital electron populations 1.21846 0.93373 1.02304 1.02666 1.21213 0.96963 0.98789 0.92624 0.92474 1.21587 1.03116 1.00025 0.91123 1.21030 0.77966 0.85501 0.84289 1.90563 1.43069 1.26858 1.86767 1.50497 1.54961 1.27368 1.04968 1.23347 1.00094 0.98910 0.79170 1.20416 0.92533 0.93254 0.93520 1.21254 1.00787 1.28782 1.06253 0.91608 1.25770 0.94647 0.97276 1.00239 1.70054 1.04949 1.40626 1.40040 0.85596 0.77441 0.78738 0.79794 1.19731 1.21228 1.19187 1.23459 0.93446 0.89248 0.94234 1.22891 0.80493 0.99783 0.94257 0.89301 1.23190 0.99556 1.01716 0.93875 1.23261 0.93108 1.04305 0.97851 1.23576 0.98565 0.96510 0.85211 1.88434 1.21152 1.76132 1.46758 0.91795 0.90789 0.93270 0.87953 0.89258 0.92280 0.89863 0.94850 0.92634 0.90059 0.91978 0.90502 0.88012 0.89408 0.88268 0.88841 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.70 71.98 0.63 -2.93 16 2 C -0.08 -2.07 1.68 -10.79 -0.02 -2.09 16 3 H 0.06 1.79 7.96 -2.39 -0.02 1.77 16 4 C -0.12 -3.77 4.86 29.85 0.15 -3.62 16 5 C 0.52 20.80 7.77 87.66 0.68 21.48 16 6 O -0.59 -26.27 14.69 -3.04 -0.04 -26.31 16 7 N -0.64 -27.12 3.61 -836.76 -3.02 -30.13 16 8 C 0.11 4.62 8.39 86.48 0.73 5.34 16 9 C 0.02 1.07 3.62 -10.87 -0.04 1.03 16 10 C -0.53 -27.51 8.77 25.60 0.22 -27.28 16 11 H 0.07 3.28 7.81 -2.91 -0.02 3.25 16 12 C 0.02 1.10 5.46 84.66 0.46 1.56 16 13 N -0.92 -50.95 13.27 21.45 0.28 -50.66 16 14 Si 0.96 41.18 29.54 68.60 2.03 43.21 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 16 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 18 C 0.12 5.13 8.17 86.49 0.71 5.83 16 19 C 0.08 1.81 3.08 31.07 0.10 1.90 16 20 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 21 C -0.15 -2.25 5.46 31.86 0.17 -2.08 16 22 C -0.15 -1.95 7.16 32.05 0.23 -1.72 16 23 C 0.04 0.70 7.78 72.65 0.56 1.27 16 24 O -0.40 -10.48 10.34 -148.98 -1.54 -12.02 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.46 7.06 -2.39 -0.02 1.44 16 27 H 0.05 1.54 5.95 -2.39 -0.01 1.53 16 28 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.09 2.98 7.60 -2.38 -0.02 2.96 16 30 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.08 3.39 8.09 -2.39 -0.02 3.37 16 32 H 0.03 1.81 8.13 -2.39 -0.02 1.79 16 33 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.08 3.40 8.09 -2.39 -0.02 3.38 16 35 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.08 1.25 7.57 -2.38 -0.02 1.23 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -62.46 331.65 3.28 -59.19 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.99 Total: 18.05 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.58 Total: -1.31 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -2.73 Total: -80.80 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.59 Total: -38.33 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -62.46 3.28 -59.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598026099.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.887 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds