Wall clock time and date at job start Mon Mar 30 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50695 * 109.47094 * 239.99997 * 2 1 3 5 5 H 1.08002 * 120.00224 * 245.25878 * 4 2 1 6 6 C 1.37878 * 120.00107 * 65.26998 * 4 2 1 7 7 N 1.31510 * 120.00105 * 195.11602 * 6 4 2 8 8 Si 1.86803 * 120.00010 * 15.11208 * 6 4 2 9 9 H 1.48500 * 109.47087 * 93.70990 * 8 6 4 10 10 H 1.48504 * 109.47032 * 213.70942 * 8 6 4 11 11 H 1.48501 * 109.46714 * 333.70997 * 8 6 4 12 12 C 1.50697 * 109.47048 * 120.00126 * 2 1 3 13 13 O 1.21282 * 120.00325 * 104.02332 * 12 2 1 14 14 N 1.34784 * 120.00144 * 284.02301 * 12 2 1 15 15 C 1.47325 * 121.03972 * 355.73372 * 14 12 2 16 16 C 1.52574 * 108.26424 * 228.46348 * 15 14 12 17 17 C 1.53365 * 113.28258 * 82.60402 * 16 15 14 18 18 C 1.53855 * 86.96387 * 89.37670 * 17 16 15 19 19 C 1.53353 * 113.51832 * 180.39097 * 16 15 14 20 20 O 1.42583 * 112.85343 * 311.64524 * 16 15 14 21 21 C 1.43092 * 113.96354 * 58.19125 * 20 16 15 22 22 C 1.47124 * 121.04647 * 176.01586 * 14 12 2 23 23 H 1.08997 * 109.59579 * 247.58283 * 22 14 12 24 24 C 1.53006 * 109.59506 * 8.04486 * 22 14 12 25 25 H 1.08998 * 109.47452 * 305.79370 * 1 2 3 26 26 H 1.09000 * 109.47084 * 65.79569 * 1 2 3 27 27 H 1.09000 * 109.47088 * 185.79001 * 1 2 3 28 28 H 0.96996 * 120.00200 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.74453 * 348.16334 * 15 14 12 30 30 H 1.08992 * 109.74586 * 108.88823 * 15 14 12 31 31 H 1.08996 * 113.63469 * 203.89554 * 17 16 15 32 32 H 1.09002 * 113.63875 * 334.85835 * 17 16 15 33 33 H 1.08998 * 113.60279 * 270.56504 * 18 17 16 34 34 H 1.08995 * 113.60293 * 139.68903 * 18 17 16 35 35 H 1.08996 * 113.63438 * 25.36245 * 19 16 15 36 36 H 1.09000 * 113.62901 * 156.32782 * 19 16 15 37 37 H 1.08998 * 109.49686 * 179.97438 * 21 20 16 38 38 H 1.08998 * 109.51081 * 59.85609 * 21 20 16 39 39 H 1.08997 * 109.46871 * 56.03634 * 24 22 14 40 40 H 1.09002 * 109.46924 * 176.03665 * 24 22 14 41 41 H 1.09000 * 109.46709 * 296.03251 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5814 -1.6354 -1.1336 6 6 1.7911 -0.1794 -2.4798 7 7 1.9560 -0.9217 -3.5528 8 14 1.2301 1.5944 -2.6484 9 1 2.4109 2.4686 -2.8645 10 1 0.3073 1.7138 -3.8058 11 1 0.5261 2.0107 -1.4089 12 6 2.0323 -0.7104 1.2304 13 8 2.4744 -1.8364 1.1426 14 7 1.9903 -0.0946 2.4286 15 6 1.5453 1.3048 2.5483 16 6 2.5624 2.0588 3.3997 17 6 3.7848 2.5342 2.6049 18 6 2.9958 3.8239 2.3200 19 6 2.2088 3.5360 3.6104 20 8 2.8947 1.3713 4.6038 21 6 3.4270 0.0594 4.3961 22 6 2.3931 -0.7966 3.6572 23 1 1.5217 -0.9483 4.2940 24 6 3.0105 -2.1493 3.2962 25 1 -0.3634 0.6010 0.8335 26 1 -0.3633 0.4213 -0.9373 27 1 -0.3633 -1.0224 0.1037 28 1 1.7860 -0.5483 -4.4317 29 1 1.4864 1.7583 1.5589 30 1 0.5679 1.3406 3.0293 31 1 4.6714 2.6910 3.2191 32 1 3.9854 1.9389 1.7141 33 1 2.3872 3.7728 1.4172 34 1 3.6031 4.7275 2.3717 35 1 1.1425 3.7462 3.5280 36 1 2.6593 3.9701 4.5030 37 1 3.6550 -0.3974 5.3591 38 1 4.3370 0.1260 3.7998 39 1 3.8425 -1.9970 2.6086 40 1 3.3720 -2.6368 4.2016 41 1 2.2569 -2.7775 2.8214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598047004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:47 Heat of formation + Delta-G solvation = -38.971908 kcal Electronic energy + Delta-G solvation = -22337.192548 eV Core-core repulsion = 19218.798920 eV Total energy + Delta-G solvation = -3118.393628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83080 -38.79475 -36.48978 -34.39934 -34.02948 -32.02357 -30.65675 -27.15735 -26.39526 -25.59165 -25.18539 -23.46970 -23.12126 -21.06243 -18.96851 -18.21754 -17.00584 -16.88601 -15.99478 -15.72001 -15.30756 -14.77746 -14.66807 -14.52849 -14.28035 -13.41179 -13.05227 -13.02349 -12.61037 -12.37179 -12.16374 -12.12314 -11.84483 -11.73026 -11.40415 -11.34799 -11.17026 -10.99391 -10.82279 -10.70935 -10.50785 -10.37101 -10.28234 -9.72741 -9.68041 -9.23471 -8.46762 -8.22099 -8.05293 -6.11085 -4.06543 3.20654 3.27730 3.31169 3.33036 3.50808 3.68691 4.36353 4.48316 4.52919 4.66630 4.76951 4.94884 5.10594 5.17053 5.26774 5.32447 5.44220 5.62203 5.63968 5.67355 5.69994 5.78550 5.81905 5.85707 5.97446 6.03795 6.14018 6.17459 6.25411 6.39329 6.40236 6.49628 6.64341 6.81524 7.02748 7.17962 7.22006 7.55413 7.96155 8.49538 9.05128 9.11161 9.51174 11.01808 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.008150 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.724610 B = 3434.716362 C = 4394.685994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 H 0.040 0.960 4 C -0.510 4.510 5 H 0.090 0.910 6 C 0.076 3.924 7 N -0.888 5.888 8 Si 0.859 3.141 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.256 1.256 12 C 0.533 3.467 13 O -0.521 6.521 14 N -0.625 5.625 15 C 0.106 3.894 16 C 0.076 3.924 17 C -0.161 4.161 18 C -0.141 4.141 19 C -0.116 4.116 20 O -0.368 6.368 21 C 0.052 3.948 22 C 0.110 3.890 23 H 0.070 0.930 24 C -0.133 4.133 25 H 0.027 0.973 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.264 0.736 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 8.795 15.403 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 H 0.058 0.942 4 C -0.548 4.548 5 H 0.108 0.892 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.686 3.314 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.180 1.180 12 C 0.324 3.676 13 O -0.395 6.395 14 N -0.363 5.363 15 C -0.018 4.018 16 C 0.035 3.965 17 C -0.199 4.199 18 C -0.179 4.179 19 C -0.154 4.154 20 O -0.286 6.286 21 C -0.026 4.026 22 C 0.006 3.994 23 H 0.088 0.912 24 C -0.191 4.191 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.186 8.207 15.290 17.355 hybrid contribution -0.268 0.914 -0.448 1.053 sum -0.083 9.121 14.843 17.422 Atomic orbital electron populations 1.22087 0.96648 1.00790 0.99894 1.19244 0.93794 0.96572 0.92372 0.94207 1.20848 1.36365 1.10173 0.87377 0.89195 1.24925 0.94786 0.97202 0.95722 1.69962 1.48842 1.35407 0.98265 0.87250 0.79004 0.86792 0.78376 1.20512 1.21139 1.17985 1.21330 0.76360 0.86608 0.83318 1.90618 1.44587 1.19392 1.84936 1.48435 1.68393 1.12480 1.06968 1.21959 0.96338 0.82084 1.01373 1.23024 0.95617 0.91795 0.86058 1.23478 0.97697 0.97673 1.01053 1.22771 0.99221 0.98088 0.97803 1.22963 1.01112 0.92460 0.98871 1.87896 1.83203 1.28279 1.29243 1.23050 0.95772 0.82962 1.00803 1.21818 0.97346 0.93589 0.86609 0.91218 1.22123 1.03021 0.94417 0.99492 0.95398 0.92414 0.92958 0.92601 0.87895 0.91072 0.89485 0.90551 0.89523 0.90657 0.90514 0.89005 0.88324 0.92594 0.91007 0.94406 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.30 37.16 0.31 -2.54 16 2 C 0.00 0.04 1.34 -92.93 -0.12 -0.08 16 3 H 0.04 0.88 5.14 -51.93 -0.27 0.61 16 4 C -0.51 -14.46 8.80 -34.44 -0.30 -14.76 16 5 H 0.09 2.92 7.09 -52.49 -0.37 2.54 16 6 C 0.08 2.15 5.33 -17.82 -0.10 2.06 16 7 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 8 Si 0.86 20.19 25.78 -169.99 -4.38 15.81 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.26 -5.40 5.52 56.52 0.31 -5.09 16 12 C 0.53 11.62 6.81 -10.98 -0.07 11.55 16 13 O -0.52 -12.83 11.11 5.56 0.06 -12.77 16 14 N -0.63 -10.93 3.03 -165.10 -0.50 -11.43 16 15 C 0.11 1.57 4.58 -3.81 -0.02 1.55 16 16 C 0.08 1.00 1.25 -90.47 -0.11 0.89 16 17 C -0.16 -2.10 6.90 -26.10 -0.18 -2.28 16 18 C -0.14 -1.55 7.73 -25.84 -0.20 -1.75 16 19 C -0.12 -1.23 7.50 -26.10 -0.20 -1.43 16 20 O -0.37 -5.13 10.51 -35.23 -0.37 -5.50 16 21 C 0.05 0.68 6.18 37.27 0.23 0.91 16 22 C 0.11 1.68 3.65 -67.47 -0.25 1.43 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 C -0.13 -2.16 7.61 37.16 0.28 -1.87 16 25 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 26 H 0.06 1.24 5.07 -51.93 -0.26 0.97 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.10 1.58 4.70 -51.93 -0.24 1.33 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 33 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.73 8.09 -51.93 -0.42 0.30 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.78 7.77 -51.93 -0.40 0.38 16 39 H 0.07 1.33 6.92 -51.93 -0.36 0.97 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.49 6.64 -51.93 -0.34 1.15 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -31.62 307.83 -6.97 -38.59 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.47 Total: 3.21 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.73 Total: -6.33 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.27 Total: -37.65 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.31 Total: -18.27 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.38 Total: 15.81 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.62 -6.97 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598047004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.378 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds