Wall clock time and date at job start Mon Mar 30 2020 05:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50695 * 109.47094 * 239.99997 * 2 1 3 5 5 H 1.08002 * 120.00224 * 245.25878 * 4 2 1 6 6 C 1.37878 * 120.00107 * 65.26998 * 4 2 1 7 7 N 1.31510 * 120.00105 * 195.11602 * 6 4 2 8 8 Si 1.86803 * 120.00010 * 15.11208 * 6 4 2 9 9 H 1.48500 * 109.47087 * 93.70990 * 8 6 4 10 10 H 1.48504 * 109.47032 * 213.70942 * 8 6 4 11 11 H 1.48501 * 109.46714 * 333.70997 * 8 6 4 12 12 C 1.50697 * 109.47048 * 120.00126 * 2 1 3 13 13 O 1.21282 * 120.00325 * 104.02332 * 12 2 1 14 14 N 1.34784 * 120.00144 * 284.02301 * 12 2 1 15 15 C 1.47325 * 121.03972 * 355.73372 * 14 12 2 16 16 C 1.52574 * 108.26424 * 228.46348 * 15 14 12 17 17 C 1.53365 * 113.28258 * 82.60402 * 16 15 14 18 18 C 1.53855 * 86.96387 * 89.37670 * 17 16 15 19 19 C 1.53353 * 113.51832 * 180.39097 * 16 15 14 20 20 O 1.42583 * 112.85343 * 311.64524 * 16 15 14 21 21 C 1.43092 * 113.96354 * 58.19125 * 20 16 15 22 22 C 1.47124 * 121.04647 * 176.01586 * 14 12 2 23 23 H 1.08997 * 109.59579 * 247.58283 * 22 14 12 24 24 C 1.53006 * 109.59506 * 8.04486 * 22 14 12 25 25 H 1.08998 * 109.47452 * 305.79370 * 1 2 3 26 26 H 1.09000 * 109.47084 * 65.79569 * 1 2 3 27 27 H 1.09000 * 109.47088 * 185.79001 * 1 2 3 28 28 H 0.96996 * 120.00200 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.74453 * 348.16334 * 15 14 12 30 30 H 1.08992 * 109.74586 * 108.88823 * 15 14 12 31 31 H 1.08996 * 113.63469 * 203.89554 * 17 16 15 32 32 H 1.09002 * 113.63875 * 334.85835 * 17 16 15 33 33 H 1.08998 * 113.60279 * 270.56504 * 18 17 16 34 34 H 1.08995 * 113.60293 * 139.68903 * 18 17 16 35 35 H 1.08996 * 113.63438 * 25.36245 * 19 16 15 36 36 H 1.09000 * 113.62901 * 156.32782 * 19 16 15 37 37 H 1.08998 * 109.49686 * 179.97438 * 21 20 16 38 38 H 1.08998 * 109.51081 * 59.85609 * 21 20 16 39 39 H 1.08997 * 109.46871 * 56.03634 * 24 22 14 40 40 H 1.09002 * 109.46924 * 176.03665 * 24 22 14 41 41 H 1.09000 * 109.46709 * 296.03251 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5814 -1.6354 -1.1336 6 6 1.7911 -0.1794 -2.4798 7 7 1.9560 -0.9217 -3.5528 8 14 1.2301 1.5944 -2.6484 9 1 2.4109 2.4686 -2.8645 10 1 0.3073 1.7138 -3.8058 11 1 0.5261 2.0107 -1.4089 12 6 2.0323 -0.7104 1.2304 13 8 2.4744 -1.8364 1.1426 14 7 1.9903 -0.0946 2.4286 15 6 1.5453 1.3048 2.5483 16 6 2.5624 2.0588 3.3997 17 6 3.7848 2.5342 2.6049 18 6 2.9958 3.8239 2.3200 19 6 2.2088 3.5360 3.6104 20 8 2.8947 1.3713 4.6038 21 6 3.4270 0.0594 4.3961 22 6 2.3931 -0.7966 3.6572 23 1 1.5217 -0.9483 4.2940 24 6 3.0105 -2.1493 3.2962 25 1 -0.3634 0.6010 0.8335 26 1 -0.3633 0.4213 -0.9373 27 1 -0.3633 -1.0224 0.1037 28 1 1.7860 -0.5483 -4.4317 29 1 1.4864 1.7583 1.5589 30 1 0.5679 1.3406 3.0293 31 1 4.6714 2.6910 3.2191 32 1 3.9854 1.9389 1.7141 33 1 2.3872 3.7728 1.4172 34 1 3.6031 4.7275 2.3717 35 1 1.1425 3.7462 3.5280 36 1 2.6593 3.9701 4.5030 37 1 3.6550 -0.3974 5.3591 38 1 4.3370 0.1260 3.7998 39 1 3.8425 -1.9970 2.6086 40 1 3.3720 -2.6368 4.2016 41 1 2.2569 -2.7775 2.8214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598047004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:46 Heat of formation + Delta-G solvation = -60.939161 kcal Electronic energy + Delta-G solvation = -22338.145120 eV Core-core repulsion = 19218.798920 eV Total energy + Delta-G solvation = -3119.346200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04767 -40.20763 -37.61556 -35.91485 -35.76623 -33.76960 -32.27632 -28.38680 -27.54264 -27.17974 -26.54195 -25.01109 -24.25333 -22.49919 -20.22421 -19.53657 -18.89805 -18.21254 -17.24522 -17.17087 -16.66518 -16.41666 -15.99972 -15.68185 -15.50841 -15.07056 -14.67568 -14.27355 -14.21844 -13.90141 -13.62324 -13.27488 -13.13000 -12.99340 -12.93216 -12.75481 -12.56252 -12.30877 -12.24225 -12.17552 -11.85585 -11.65163 -11.48784 -11.34136 -11.31170 -10.78815 -10.62668 -9.86780 -9.42746 -8.29868 -6.32861 1.35368 1.38848 1.49283 1.81845 1.95029 2.35856 2.68818 3.03038 3.50907 3.54548 3.64673 3.73950 3.87433 3.92137 4.12206 4.20076 4.24702 4.37051 4.42926 4.55396 4.65274 4.67185 4.68215 4.73377 4.77558 4.82147 4.86278 5.01390 5.04606 5.07572 5.10506 5.21080 5.31638 5.39842 5.44990 5.56640 5.67569 6.16998 6.21431 6.48579 6.79419 7.26528 7.44058 8.87852 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.008150 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.724610 B = 3434.716362 C = 4394.685994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.525 4.525 5 H 0.025 0.975 6 C 0.014 3.986 7 N -0.945 5.945 8 Si 0.934 3.066 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.209 1.209 12 C 0.527 3.473 13 O -0.566 6.566 14 N -0.619 5.619 15 C 0.097 3.903 16 C 0.067 3.933 17 C -0.169 4.169 18 C -0.136 4.136 19 C -0.101 4.101 20 O -0.368 6.368 21 C 0.058 3.942 22 C 0.106 3.894 23 H 0.090 0.910 24 C -0.124 4.124 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.267 0.733 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 12.484 18.135 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.020 4.020 3 H 0.078 0.922 4 C -0.563 4.563 5 H 0.043 0.957 6 C -0.184 4.184 7 N -0.584 5.584 8 Si 0.755 3.245 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.131 1.131 12 C 0.318 3.682 13 O -0.444 6.444 14 N -0.354 5.354 15 C -0.025 4.025 16 C 0.027 3.973 17 C -0.207 4.207 18 C -0.174 4.174 19 C -0.138 4.138 20 O -0.286 6.286 21 C -0.019 4.019 22 C 0.003 3.997 23 H 0.108 0.892 24 C -0.181 4.181 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.148 0.852 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.286 11.929 18.088 21.706 hybrid contribution 0.276 -0.370 -1.264 1.346 sum -1.010 11.558 16.824 20.437 Atomic orbital electron populations 1.21982 0.94496 1.00792 1.01605 1.19168 0.95349 0.96751 0.90750 0.92179 1.20970 1.36209 1.08648 0.90433 0.95661 1.25971 0.94815 1.02877 0.94716 1.70140 1.50906 1.38250 0.99137 0.86059 0.79051 0.79123 0.80224 1.19844 1.21028 1.13134 1.21141 0.76399 0.86127 0.84553 1.90626 1.46632 1.21277 1.85861 1.48355 1.67072 1.13714 1.06265 1.22262 0.98054 0.80194 1.01993 1.23193 0.95266 0.93111 0.85759 1.23529 0.98367 0.98833 0.99972 1.22789 0.98974 0.97470 0.98135 1.22948 1.02369 0.89590 0.98940 1.87911 1.83063 1.28155 1.29498 1.23048 0.94270 0.82783 1.01817 1.22049 0.98724 0.93117 0.85820 0.89211 1.21908 1.01008 0.95218 1.00016 0.90893 0.92615 0.94623 0.92412 0.88185 0.88642 0.88959 0.93715 0.89621 0.88912 0.88591 0.87825 0.85155 0.93921 0.94305 0.90743 0.93231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.30 71.98 0.60 -4.62 16 2 C 0.00 0.06 1.34 -12.29 -0.02 0.05 16 3 H 0.06 2.53 5.14 -2.39 -0.01 2.51 16 4 C -0.52 -31.25 8.80 25.60 0.23 -31.03 16 5 H 0.03 1.78 7.09 -2.91 -0.02 1.76 16 6 C 0.01 0.79 5.33 84.66 0.45 1.24 16 7 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 8 Si 0.93 41.12 25.78 68.60 1.77 42.89 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.21 -7.61 5.52 99.48 0.55 -7.06 16 12 C 0.53 23.49 6.81 87.66 0.60 24.08 16 13 O -0.57 -29.77 11.11 -3.03 -0.03 -29.80 16 14 N -0.62 -20.85 3.03 -794.65 -2.41 -23.26 16 15 C 0.10 2.54 4.58 86.08 0.39 2.94 16 16 C 0.07 1.54 1.25 -10.70 -0.01 1.53 16 17 C -0.17 -4.04 6.90 31.00 0.21 -3.83 16 18 C -0.14 -2.46 7.73 31.17 0.24 -2.22 16 19 C -0.10 -1.65 7.50 31.00 0.23 -1.42 16 20 O -0.37 -8.91 10.51 -148.98 -1.57 -10.48 16 21 C 0.06 1.39 6.18 72.06 0.44 1.84 16 22 C 0.11 3.04 3.65 44.95 0.16 3.21 16 23 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 24 C -0.12 -4.06 7.61 71.98 0.55 -3.52 16 25 H 0.07 2.23 7.11 -2.39 -0.02 2.22 16 26 H 0.05 2.23 5.07 -2.39 -0.01 2.21 16 27 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.10 2.68 4.70 -2.39 -0.01 2.67 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.33 8.09 -2.39 -0.02 1.32 16 33 H 0.09 1.58 7.66 -2.39 -0.02 1.57 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 1.14 7.77 -2.39 -0.02 1.13 16 39 H 0.04 1.50 6.92 -2.39 -0.02 1.49 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 Total: -1.00 -75.38 307.83 2.99 -72.39 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.86 Total: 19.95 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.08 Total: -11.74 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.11 Total: -83.20 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.60 Total: -40.28 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.77 Total: 42.89 kcal Total: -75.38 2.99 -72.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598047004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.448 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds