Wall clock time and date at job start Mon Mar 30 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.72078 * 2 1 4 4 C 1.53695 * 109.67551 * 120.64395 * 2 1 3 5 5 O 1.43092 * 109.26073 * 173.98607 * 4 2 1 6 6 C 1.42583 * 113.96306 * 299.75454 * 5 4 2 7 7 C 1.53346 * 113.71297 * 189.35225 * 6 5 4 8 8 C 1.53855 * 86.97170 * 89.60289 * 7 6 5 9 9 C 1.53375 * 113.66439 * 287.42434 * 6 5 4 10 10 C 1.52974 * 112.78037 * 58.32809 * 6 5 4 11 11 N 1.47127 * 109.59393 * 239.61171 * 2 1 3 12 12 C 1.34771 * 121.04771 * 8.05269 * 11 2 1 13 13 O 1.21284 * 119.99987 * 5.25623 * 12 11 2 14 14 C 1.50701 * 120.00436 * 185.25340 * 12 11 2 15 15 C 1.52998 * 109.47553 * 175.03633 * 14 12 11 16 16 C 1.50695 * 109.47192 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00281 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99668 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00471 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47369 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47288 * 300.00198 * 20 18 16 23 23 H 1.48502 * 109.47190 * 59.99648 * 20 18 16 24 24 H 1.09003 * 109.47119 * 172.54873 * 1 2 3 25 25 H 1.09006 * 109.46676 * 292.55021 * 1 2 3 26 26 H 1.08991 * 109.47334 * 52.54673 * 1 2 3 27 27 H 1.09005 * 109.64624 * 53.98617 * 4 2 1 28 28 H 1.08996 * 109.44414 * 293.87627 * 4 2 1 29 29 H 1.08993 * 113.63585 * 204.12989 * 7 6 5 30 30 H 1.09009 * 113.62826 * 335.08526 * 7 6 5 31 31 H 1.09001 * 113.60732 * 270.56636 * 8 7 6 32 32 H 1.09001 * 113.60375 * 139.69225 * 8 7 6 33 33 H 1.09005 * 113.63315 * 24.87298 * 9 6 5 34 34 H 1.09000 * 113.63306 * 155.74265 * 9 6 5 35 35 H 1.09000 * 109.74865 * 191.74679 * 10 6 5 36 36 H 1.08997 * 109.74614 * 71.02411 * 10 6 5 37 37 H 1.09001 * 109.46767 * 55.03387 * 14 12 11 38 38 H 1.09004 * 109.47032 * 295.03876 * 14 12 11 39 39 H 1.09005 * 109.46580 * 60.00139 * 15 14 12 40 40 H 1.08996 * 109.47210 * 300.00524 * 15 14 12 41 41 H 0.97000 * 120.00482 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8978 1.0260 0.0000 4 6 2.0475 -0.7376 1.2451 5 8 3.4714 -0.8554 1.1662 6 6 3.9303 -1.5811 0.0279 7 6 5.4298 -1.9003 0.0634 8 6 5.0525 -3.2009 0.7936 9 6 3.6753 -3.0909 0.1165 10 6 3.4699 -0.9631 -1.2936 11 7 2.0235 -0.7012 -1.1956 12 6 1.1795 -1.0868 -2.1731 13 8 0.0088 -0.7743 -2.1217 14 6 1.6904 -1.9064 -3.3299 15 6 0.5177 -2.3121 -4.2249 16 6 1.0288 -3.1311 -5.3820 17 1 2.0844 -3.3416 -5.4700 18 6 0.1487 -3.6117 -6.3284 19 7 -1.1366 -3.3550 -6.2214 20 14 0.7821 -4.6276 -7.7624 21 1 -0.3561 -5.0212 -8.6311 22 1 1.7509 -3.8230 -8.5493 23 1 1.4551 -5.8466 -7.2464 24 1 -0.3633 -1.0190 -0.1333 25 1 -0.3633 0.3941 0.9492 26 1 -0.3633 0.6249 -0.8157 27 1 1.6026 -1.7316 1.2936 28 1 1.7780 -0.1746 2.1386 29 1 5.8653 -2.0631 -0.9224 30 1 6.0094 -1.2084 0.6746 31 1 5.0152 -3.0976 1.8780 32 1 5.6302 -4.0666 0.4696 33 1 2.8444 -3.3561 0.7703 34 1 3.6237 -3.5831 -0.8547 35 1 3.6639 -1.6566 -2.1118 36 1 4.0024 -0.0283 -1.4682 37 1 2.1848 -2.8009 -2.9511 38 1 2.4011 -1.3156 -3.9079 39 1 0.0234 -1.4175 -4.6037 40 1 -0.1930 -2.9028 -3.6470 41 1 -1.7559 -3.6934 -6.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598053552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:43 Heat of formation + Delta-G solvation = -52.059366 kcal Electronic energy + Delta-G solvation = -21479.794810 eV Core-core repulsion = 18360.833666 eV Total energy + Delta-G solvation = -3118.961143 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91515 -39.00235 -36.42069 -34.61227 -33.63410 -32.29473 -30.56026 -27.71528 -26.54076 -25.69721 -25.62174 -22.98293 -22.61918 -20.80197 -19.39735 -18.50768 -16.87301 -16.65646 -16.15760 -15.67956 -15.59568 -14.98824 -14.78319 -14.49297 -14.36092 -13.69155 -13.61285 -13.27506 -12.56961 -12.37322 -12.17469 -12.03540 -11.81843 -11.77154 -11.48972 -11.24208 -11.06762 -10.98188 -10.91819 -10.81201 -10.62078 -10.40425 -9.97153 -9.88641 -9.58152 -9.13820 -8.55724 -8.34457 -8.23388 -5.97424 -4.02018 3.11091 3.18824 3.33092 3.38116 3.39610 3.44042 4.35578 4.44661 4.48129 4.58199 4.68478 4.80905 4.93054 5.10835 5.17820 5.30690 5.37509 5.45558 5.52530 5.54138 5.60110 5.61565 5.65155 5.77504 5.83310 5.91438 6.04063 6.11671 6.16205 6.18594 6.27641 6.50651 6.81079 6.87898 7.07849 7.71892 7.72612 7.84227 8.05241 8.36957 8.73486 9.06011 9.61560 11.13472 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.005147 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.011042 B = 5439.032723 C = 6388.922116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 H 0.072 0.928 4 C 0.051 3.949 5 O -0.356 6.356 6 C 0.078 3.922 7 C -0.121 4.121 8 C -0.134 4.134 9 C -0.161 4.161 10 C 0.097 3.903 11 N -0.625 5.625 12 C 0.515 3.485 13 O -0.524 6.524 14 C -0.130 4.130 15 C 0.039 3.961 16 C -0.528 4.528 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.021 0.979 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.112 4.046 15.349 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 H 0.090 0.910 4 C -0.026 4.026 5 O -0.275 6.275 6 C 0.037 3.963 7 C -0.159 4.159 8 C -0.171 4.171 9 C -0.199 4.199 10 C -0.027 4.027 11 N -0.362 5.362 12 C 0.306 3.694 13 O -0.399 6.399 14 C -0.169 4.169 15 C 0.001 3.999 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.213 1.213 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.385 4.259 15.402 19.621 hybrid contribution 0.176 -0.627 -0.936 1.141 sum 11.561 3.632 14.466 18.871 Atomic orbital electron populations 1.22100 0.91901 1.04450 1.00898 1.21918 0.96632 0.95663 0.85047 0.90984 1.23183 0.80984 1.00462 0.97970 1.87871 1.21431 1.74629 1.43523 1.22621 0.96093 0.91277 0.86321 1.22918 0.93320 0.97742 1.01916 1.22785 0.96702 0.97585 1.00057 1.23475 0.98196 0.96011 1.02198 1.22269 0.81193 1.01438 0.97783 1.48427 1.07304 1.59965 1.20466 1.21515 0.85837 0.79133 0.82963 1.90696 1.17374 1.55149 1.76722 1.21916 1.02906 0.97960 0.94168 1.18888 0.91252 0.96995 0.92742 1.21167 0.93627 1.33297 1.08520 0.92727 1.25012 0.94846 0.96359 0.98060 1.69982 1.01899 1.45402 1.35529 0.86660 0.78310 0.80614 0.82397 1.21261 1.20236 1.20263 0.91318 0.93981 0.89887 0.92437 0.87974 0.88373 0.90360 0.90000 0.91129 0.91095 0.88776 0.88012 0.91054 0.90593 0.90323 0.95705 0.96012 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.64 37.16 0.28 -1.73 16 2 C 0.11 1.51 3.66 -67.22 -0.25 1.26 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C 0.05 0.60 6.19 37.52 0.23 0.83 16 5 O -0.36 -4.38 10.44 -35.23 -0.37 -4.75 16 6 C 0.08 0.88 1.12 -90.26 -0.10 0.77 16 7 C -0.12 -1.09 7.47 -26.11 -0.20 -1.28 16 8 C -0.13 -1.22 8.03 -25.84 -0.21 -1.43 16 9 C -0.16 -1.78 7.23 -26.09 -0.19 -1.97 16 10 C 0.10 1.19 5.70 -3.61 -0.02 1.17 16 11 N -0.62 -9.55 3.02 -164.59 -0.50 -10.05 16 12 C 0.51 9.98 7.50 -10.99 -0.08 9.90 16 13 O -0.52 -11.86 11.68 5.55 0.06 -11.79 16 14 C -0.13 -2.63 4.03 -27.88 -0.11 -2.75 16 15 C 0.04 1.04 4.28 -27.89 -0.12 0.92 16 16 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.31 13.29 55.43 0.74 -26.58 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H 0.07 1.17 6.92 -51.93 -0.36 0.81 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.42 6.65 -51.93 -0.35 1.08 16 27 H 0.06 0.71 7.11 -51.93 -0.37 0.34 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.84 7.18 -51.93 -0.37 0.47 16 34 H 0.09 1.06 7.95 -51.93 -0.41 0.64 16 35 H 0.10 1.21 5.86 -51.93 -0.30 0.90 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.41 7.62 -51.93 -0.40 1.01 16 38 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 39 H 0.02 0.73 8.05 -51.93 -0.42 0.31 16 40 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -32.59 321.36 -8.15 -40.73 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.74 Total: -1.06 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.17 Total: -7.87 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.24 Total: -36.63 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.30 Total: -16.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.59 -8.15 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598053552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.326 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds