Wall clock time and date at job start Mon Mar 30 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.72078 * 2 1 4 4 C 1.53695 * 109.67551 * 120.64395 * 2 1 3 5 5 O 1.43092 * 109.26073 * 173.98607 * 4 2 1 6 6 C 1.42583 * 113.96306 * 299.75454 * 5 4 2 7 7 C 1.53346 * 113.71297 * 189.35225 * 6 5 4 8 8 C 1.53855 * 86.97170 * 89.60289 * 7 6 5 9 9 C 1.53375 * 113.66439 * 287.42434 * 6 5 4 10 10 C 1.52974 * 112.78037 * 58.32809 * 6 5 4 11 11 N 1.47127 * 109.59393 * 239.61171 * 2 1 3 12 12 C 1.34771 * 121.04771 * 8.05269 * 11 2 1 13 13 O 1.21284 * 119.99987 * 5.25623 * 12 11 2 14 14 C 1.50701 * 120.00436 * 185.25340 * 12 11 2 15 15 C 1.52998 * 109.47553 * 175.03633 * 14 12 11 16 16 C 1.50695 * 109.47192 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99713 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00281 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99668 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00471 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47369 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.47288 * 300.00198 * 20 18 16 23 23 H 1.48502 * 109.47190 * 59.99648 * 20 18 16 24 24 H 1.09003 * 109.47119 * 172.54873 * 1 2 3 25 25 H 1.09006 * 109.46676 * 292.55021 * 1 2 3 26 26 H 1.08991 * 109.47334 * 52.54673 * 1 2 3 27 27 H 1.09005 * 109.64624 * 53.98617 * 4 2 1 28 28 H 1.08996 * 109.44414 * 293.87627 * 4 2 1 29 29 H 1.08993 * 113.63585 * 204.12989 * 7 6 5 30 30 H 1.09009 * 113.62826 * 335.08526 * 7 6 5 31 31 H 1.09001 * 113.60732 * 270.56636 * 8 7 6 32 32 H 1.09001 * 113.60375 * 139.69225 * 8 7 6 33 33 H 1.09005 * 113.63315 * 24.87298 * 9 6 5 34 34 H 1.09000 * 113.63306 * 155.74265 * 9 6 5 35 35 H 1.09000 * 109.74865 * 191.74679 * 10 6 5 36 36 H 1.08997 * 109.74614 * 71.02411 * 10 6 5 37 37 H 1.09001 * 109.46767 * 55.03387 * 14 12 11 38 38 H 1.09004 * 109.47032 * 295.03876 * 14 12 11 39 39 H 1.09005 * 109.46580 * 60.00139 * 15 14 12 40 40 H 1.08996 * 109.47210 * 300.00524 * 15 14 12 41 41 H 0.97000 * 120.00482 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8978 1.0260 0.0000 4 6 2.0475 -0.7376 1.2451 5 8 3.4714 -0.8554 1.1662 6 6 3.9303 -1.5811 0.0279 7 6 5.4298 -1.9003 0.0634 8 6 5.0525 -3.2009 0.7936 9 6 3.6753 -3.0909 0.1165 10 6 3.4699 -0.9631 -1.2936 11 7 2.0235 -0.7012 -1.1956 12 6 1.1795 -1.0868 -2.1731 13 8 0.0088 -0.7743 -2.1217 14 6 1.6904 -1.9064 -3.3299 15 6 0.5177 -2.3121 -4.2249 16 6 1.0288 -3.1311 -5.3820 17 1 2.0844 -3.3416 -5.4700 18 6 0.1487 -3.6117 -6.3284 19 7 -1.1366 -3.3550 -6.2214 20 14 0.7821 -4.6276 -7.7624 21 1 -0.3561 -5.0212 -8.6311 22 1 1.7509 -3.8230 -8.5493 23 1 1.4551 -5.8466 -7.2464 24 1 -0.3633 -1.0190 -0.1333 25 1 -0.3633 0.3941 0.9492 26 1 -0.3633 0.6249 -0.8157 27 1 1.6026 -1.7316 1.2936 28 1 1.7780 -0.1746 2.1386 29 1 5.8653 -2.0631 -0.9224 30 1 6.0094 -1.2084 0.6746 31 1 5.0152 -3.0976 1.8780 32 1 5.6302 -4.0666 0.4696 33 1 2.8444 -3.3561 0.7703 34 1 3.6237 -3.5831 -0.8547 35 1 3.6639 -1.6566 -2.1118 36 1 4.0024 -0.0283 -1.4682 37 1 2.1848 -2.8009 -2.9511 38 1 2.4011 -1.3156 -3.9079 39 1 0.0234 -1.4175 -4.6037 40 1 -0.1930 -2.9028 -3.6470 41 1 -1.7559 -3.6934 -6.8869 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598053552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:43 Heat of formation + Delta-G solvation = -72.967283 kcal Electronic energy + Delta-G solvation = -21480.701445 eV Core-core repulsion = 18360.833666 eV Total energy + Delta-G solvation = -3119.867778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.99817 -40.28052 -37.44373 -35.83251 -35.63942 -33.76933 -32.29585 -28.89035 -27.57392 -27.53526 -26.48385 -24.39809 -23.76658 -22.36596 -20.35146 -19.87713 -18.68464 -17.78473 -17.43806 -16.97738 -16.87798 -16.47590 -16.14056 -15.77937 -15.42202 -14.93808 -14.84907 -14.59754 -14.17589 -13.90080 -13.58758 -13.19603 -13.19266 -12.99182 -12.76853 -12.74511 -12.51581 -12.41089 -12.10894 -11.92939 -11.81207 -11.74134 -11.57285 -11.31843 -11.30393 -10.83238 -10.56343 -10.06684 -9.43752 -8.18339 -6.32618 1.41813 1.46177 1.53909 1.65864 1.88052 2.42588 2.57254 3.14716 3.48159 3.61925 3.62846 3.72367 3.88840 3.93183 4.07063 4.15314 4.26675 4.39283 4.42944 4.50837 4.51583 4.62974 4.68380 4.72999 4.82913 4.85860 5.00201 5.03258 5.08347 5.13771 5.24328 5.29459 5.39993 5.47647 5.60312 5.61609 5.83625 6.16515 6.16827 6.35115 6.85354 7.25491 7.37825 8.94112 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.005147 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.011042 B = 5439.032723 C = 6388.922116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.107 3.893 3 H 0.087 0.913 4 C 0.058 3.942 5 O -0.359 6.359 6 C 0.071 3.929 7 C -0.110 4.110 8 C -0.126 4.126 9 C -0.170 4.170 10 C 0.089 3.911 11 N -0.616 5.616 12 C 0.512 3.488 13 O -0.569 6.569 14 C -0.117 4.117 15 C 0.046 3.954 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.005 4.005 19 N -0.938 5.938 20 Si 0.973 3.027 21 H -0.288 1.288 22 H -0.262 1.262 23 H -0.262 1.262 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.099 0.901 39 H -0.018 1.018 40 H -0.020 1.020 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.348 3.733 15.852 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.004 3.996 3 H 0.105 0.895 4 C -0.019 4.019 5 O -0.278 6.278 6 C 0.030 3.970 7 C -0.147 4.147 8 C -0.164 4.164 9 C -0.208 4.208 10 C -0.033 4.033 11 N -0.351 5.351 12 C 0.302 3.698 13 O -0.449 6.449 14 C -0.157 4.157 15 C 0.009 3.991 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.214 1.214 22 H -0.187 1.187 23 H -0.186 1.186 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.001 0.999 40 H -0.001 1.001 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.688 3.955 15.945 22.037 hybrid contribution -0.856 -0.492 -1.026 1.424 sum 13.832 3.463 14.918 20.637 Atomic orbital electron populations 1.21904 0.93078 1.02054 1.01438 1.22116 0.95737 0.96587 0.85131 0.89500 1.23178 0.80844 1.00085 0.97780 1.87880 1.21354 1.74705 1.43843 1.22809 0.97914 0.90935 0.85349 1.22957 0.91434 0.97333 1.03023 1.22752 0.95278 0.98405 0.99919 1.23530 0.99052 0.96080 1.02093 1.22595 0.79054 1.02689 0.98979 1.48375 1.08311 1.58642 1.19776 1.21297 0.85607 0.79214 0.83652 1.90703 1.19301 1.56986 1.77861 1.21658 1.00503 0.99492 0.93998 1.18653 0.92625 0.94488 0.93364 1.21659 0.94687 1.33044 1.08725 0.90645 1.26118 0.94885 0.97707 1.01550 1.70169 1.03697 1.46971 1.36912 0.85390 0.77775 0.79067 0.78128 1.21370 1.18672 1.18636 0.94343 0.90626 0.92870 0.93404 0.85115 0.86578 0.89611 0.90090 0.89766 0.92578 0.89063 0.87387 0.89310 0.88392 0.88255 0.99924 1.00112 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 7.64 71.98 0.55 -3.28 16 2 C 0.11 2.80 3.66 45.11 0.17 2.96 16 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.06 1.25 6.19 72.22 0.45 1.69 16 5 O -0.36 -7.88 10.44 -148.98 -1.56 -9.44 16 6 C 0.07 1.41 1.12 -10.56 -0.01 1.40 16 7 C -0.11 -1.58 7.47 31.00 0.23 -1.35 16 8 C -0.13 -1.95 8.03 31.17 0.25 -1.70 16 9 C -0.17 -3.46 7.23 31.01 0.22 -3.24 16 10 C 0.09 1.99 5.70 86.21 0.49 2.48 16 11 N -0.62 -18.38 3.02 -793.02 -2.39 -20.78 16 12 C 0.51 20.33 7.50 87.66 0.66 20.99 16 13 O -0.57 -27.39 11.68 -3.04 -0.04 -27.43 16 14 C -0.12 -4.77 4.03 29.85 0.12 -4.65 16 15 C 0.05 2.59 4.28 29.85 0.13 2.72 16 16 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 17 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 18 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 19 N -0.94 -59.55 13.29 21.45 0.28 -59.27 16 20 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 H 0.04 1.37 6.92 -2.39 -0.02 1.35 16 25 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.05 1.91 6.65 -2.39 -0.02 1.89 16 27 H 0.05 1.13 7.11 -2.38 -0.02 1.11 16 28 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.12 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.30 7.18 -2.38 -0.02 1.28 16 34 H 0.09 1.90 7.95 -2.39 -0.02 1.88 16 35 H 0.11 2.27 5.86 -2.39 -0.01 2.26 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 3.54 7.62 -2.39 -0.02 3.52 16 38 H 0.10 3.62 8.05 -2.38 -0.02 3.60 16 39 H -0.02 -1.12 8.05 -2.38 -0.02 -1.14 16 40 H -0.02 -1.24 8.14 -2.39 -0.02 -1.25 16 41 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -74.28 321.36 3.27 -71.01 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.00 Total: 12.23 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: 3.95 Total: -12.42 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.11 Total: -80.04 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.59 Total: -36.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -74.28 3.27 -71.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598053552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.956 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds