Wall clock time and date at job start Mon Mar 30 2020 05:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47362 * 2 1 4 4 C 1.50701 * 109.47071 * 119.99395 * 2 1 3 5 5 H 1.08004 * 120.00048 * 119.99883 * 4 2 1 6 6 C 1.37871 * 120.00312 * 300.00270 * 4 2 1 7 7 N 1.31516 * 119.99974 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00232 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47044 * 120.00202 * 8 6 4 11 11 H 1.48505 * 109.47489 * 239.99899 * 8 6 4 12 12 C 1.50700 * 109.47563 * 239.99398 * 2 1 3 13 13 O 1.21286 * 119.99509 * 334.61990 * 12 2 1 14 14 N 1.34776 * 120.00187 * 154.61034 * 12 2 1 15 15 C 1.48088 * 127.84629 * 354.82579 * 14 12 2 16 16 C 1.54282 * 104.76203 * 219.86625 * 15 14 12 17 17 C 1.52999 * 112.16175 * 213.25349 * 16 15 14 18 18 C 1.54390 * 109.35909 * 86.76016 * 16 15 14 19 19 O 1.44379 * 104.92678 * 272.73653 * 18 16 15 20 20 C 1.45421 * 105.75248 * 319.67349 * 19 18 16 21 21 C 1.54394 * 104.41105 * 39.86726 * 20 19 18 22 22 C 1.52999 * 112.70759 * 213.92425 * 21 20 19 23 23 C 1.48088 * 127.84952 * 174.79668 * 14 12 2 24 24 H 1.08994 * 109.47223 * 185.64886 * 1 2 3 25 25 H 1.09005 * 109.46973 * 305.65319 * 1 2 3 26 26 H 1.09006 * 109.46733 * 65.64827 * 1 2 3 27 27 H 0.97005 * 120.00078 * 180.02562 * 7 6 4 28 28 H 1.09002 * 110.38520 * 338.68379 * 15 14 12 29 29 H 1.09000 * 110.38594 * 100.93468 * 15 14 12 30 30 H 1.08997 * 109.47242 * 177.99625 * 17 16 15 31 31 H 1.09008 * 109.46366 * 297.99203 * 17 16 15 32 32 H 1.08996 * 109.47166 * 57.99057 * 17 16 15 33 33 H 1.09003 * 110.34511 * 31.59959 * 18 16 15 34 34 H 1.09002 * 110.34799 * 153.87152 * 18 16 15 35 35 H 1.09002 * 110.15727 * 281.38997 * 20 19 18 36 36 H 1.08999 * 111.03880 * 158.77723 * 20 19 18 37 37 H 1.08994 * 109.47216 * 297.43406 * 22 21 20 38 38 H 1.08998 * 109.46861 * 177.43675 * 22 21 20 39 39 H 1.09000 * 109.47299 * 57.43812 * 22 21 20 40 40 H 1.09004 * 110.37934 * 21.31753 * 23 14 12 41 41 H 1.09006 * 110.47236 * 259.02012 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.1464 -2.2867 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1660 -1.5864 4.8163 12 6 2.0324 -0.7105 -1.2304 13 8 1.3398 -1.5445 -1.7742 14 7 3.2512 -0.4191 -1.7264 15 6 4.1899 0.6318 -1.2710 16 6 4.7897 1.2123 -2.5686 17 6 6.2420 1.6572 -2.3846 18 6 3.8715 2.3342 -3.0996 19 8 2.8975 1.6586 -3.9239 20 6 3.6357 0.6391 -4.6522 21 6 4.6344 0.0756 -3.6184 22 6 5.9660 -0.3379 -4.2481 23 6 3.9560 -1.0774 -2.8502 24 1 -0.3633 -1.0226 0.1011 25 1 -0.3633 0.5990 0.8351 26 1 -0.3633 0.4238 -0.9363 27 1 0.7094 1.1620 3.4844 28 1 3.6553 1.4060 -0.7206 29 1 4.9734 0.1979 -0.6498 30 1 6.6321 2.0256 -3.3333 31 1 6.2868 2.4520 -1.6400 32 1 6.8414 0.8109 -2.0492 33 1 3.3790 2.8444 -2.2719 34 1 4.4457 3.0436 -3.6956 35 1 4.1698 1.0883 -5.4895 36 1 2.9703 -0.1489 -5.0049 37 1 5.7953 -1.1417 -4.9641 38 1 6.6447 -0.6838 -3.4685 39 1 6.4069 0.5174 -4.7603 40 1 3.2445 -1.5952 -3.4934 41 1 4.7044 -1.7752 -2.4744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598066448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:47 Heat of formation + Delta-G solvation = -82.375388 kcal Electronic energy + Delta-G solvation = -22139.501706 eV Core-core repulsion = 19019.225961 eV Total energy + Delta-G solvation = -3120.275745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88351 -38.13727 -35.65128 -33.74348 -32.87422 -32.21214 -30.29494 -26.92614 -26.31319 -25.87032 -25.37406 -25.03334 -21.99903 -20.97476 -18.59137 -18.26633 -16.47744 -16.40841 -15.85606 -15.35468 -15.28872 -14.64705 -14.15188 -14.00410 -13.91175 -13.74153 -13.20698 -12.87424 -12.75703 -12.12887 -12.10563 -11.90744 -11.73530 -11.51210 -11.18224 -11.06764 -10.99548 -10.90494 -10.78198 -10.48414 -10.37037 -10.33983 -10.23897 -10.03857 -9.61692 -8.98306 -8.61135 -8.33872 -7.95831 -6.09097 -4.16275 3.25463 3.33637 3.37892 3.75026 3.78512 4.05238 4.20390 4.39819 4.56463 4.81934 4.92084 5.08186 5.19212 5.22624 5.26093 5.48251 5.56554 5.59212 5.61576 5.69642 5.75210 5.86890 5.89499 5.92172 6.00576 6.04137 6.11788 6.15200 6.26656 6.31980 6.85513 6.90699 6.96624 7.07346 7.22299 7.61267 7.79407 7.98382 8.22191 8.45283 8.83721 9.28600 9.48961 10.97476 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.006314 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.477879 B = 4433.281166 C = 4710.893057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.037 3.963 3 H 0.044 0.956 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.553 3.447 13 O -0.566 6.566 14 N -0.619 5.619 15 C 0.124 3.876 16 C -0.107 4.107 17 C -0.126 4.126 18 C 0.060 3.940 19 O -0.366 6.366 20 C 0.060 3.940 21 C -0.107 4.107 22 C -0.126 4.126 23 C 0.115 3.885 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.011 0.989 27 H 0.262 0.738 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.104 3.290 -11.366 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.016 3.984 3 H 0.061 0.939 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.347 3.653 13 O -0.444 6.444 14 N -0.353 5.353 15 C 0.000 4.000 16 C -0.109 4.109 17 C -0.183 4.183 18 C -0.017 4.017 19 O -0.284 6.284 20 C -0.017 4.017 21 C -0.108 4.108 22 C -0.183 4.183 23 C -0.008 4.008 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.258 2.966 -11.463 16.338 hybrid contribution 0.607 -0.492 0.887 1.182 sum 11.865 2.474 -10.575 16.085 Atomic orbital electron populations 1.21574 0.96069 1.00905 0.99251 1.18847 0.94581 0.96114 0.88825 0.93859 1.20787 1.31941 1.12549 0.89316 0.92488 1.24902 0.94820 0.94921 0.98918 1.69916 1.36178 1.22668 1.23585 0.86440 0.78721 0.79656 0.82659 1.19756 1.20879 1.20797 1.21647 0.77336 0.81760 0.84558 1.90530 1.55847 1.36093 1.61910 1.48885 1.17087 1.35603 1.33757 1.22245 0.92489 0.91442 0.93824 1.22933 0.96320 0.95228 0.96370 1.21603 0.93300 1.01621 1.01824 1.23423 0.90141 0.93692 0.94461 1.89298 1.31203 1.49319 1.58564 1.23604 0.93531 0.91154 0.93383 1.22868 0.96035 0.96345 0.95544 1.21603 0.94892 1.01263 1.00565 1.22152 0.95402 0.93822 0.89465 0.94333 0.89829 0.97028 0.92781 0.89349 0.91380 0.92217 0.91879 0.91727 0.88790 0.92644 0.92569 0.89155 0.92247 0.91701 0.92066 0.90419 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 8.32 37.16 0.31 -2.86 16 2 C 0.04 0.97 2.25 -92.93 -0.21 0.76 16 3 H 0.04 1.14 6.63 -51.93 -0.34 0.80 16 4 C -0.51 -14.05 8.55 -34.44 -0.29 -14.34 16 5 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -24.74 11.38 55.43 0.63 -24.11 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.55 13.69 6.95 -10.99 -0.08 13.62 16 13 O -0.57 -15.49 16.46 5.55 0.09 -15.40 16 14 N -0.62 -12.35 3.21 -169.54 -0.54 -12.89 16 15 C 0.12 2.04 5.89 -2.50 -0.01 2.03 16 16 C -0.11 -1.35 1.10 -151.78 -0.17 -1.52 16 17 C -0.13 -1.18 7.71 37.16 0.29 -0.89 16 18 C 0.06 0.80 6.70 37.89 0.25 1.06 16 19 O -0.37 -6.05 11.56 -35.23 -0.41 -6.45 16 20 C 0.06 0.80 6.75 37.89 0.26 1.05 16 21 C -0.11 -1.33 1.09 -151.79 -0.17 -1.49 16 22 C -0.13 -1.13 7.70 37.16 0.29 -0.84 16 23 C 0.12 1.86 6.07 -2.51 -0.02 1.84 16 24 H 0.04 1.04 8.05 -51.93 -0.42 0.62 16 25 H 0.08 2.29 6.24 -51.93 -0.32 1.96 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.09 1.58 6.02 -51.93 -0.31 1.27 16 29 H 0.07 1.07 7.97 -51.93 -0.41 0.66 16 30 H 0.06 0.47 7.26 -51.93 -0.38 0.09 16 31 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.06 0.57 7.24 -51.93 -0.38 0.20 16 33 H 0.09 1.32 7.54 -51.93 -0.39 0.92 16 34 H 0.06 0.61 8.01 -51.93 -0.42 0.20 16 35 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16 36 H 0.09 1.24 7.48 -51.93 -0.39 0.85 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.55 7.21 -51.93 -0.37 0.18 16 39 H 0.06 0.47 7.29 -51.93 -0.38 0.09 16 40 H 0.08 1.34 7.19 -51.93 -0.37 0.97 16 41 H 0.06 0.92 7.99 -51.93 -0.41 0.50 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -32.17 318.43 -6.62 -38.80 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.53 Total: -0.95 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 0.35 Total: 0.14 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.09 Total: -37.00 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.32 Total: -21.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.17 -6.62 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598066448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.578 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds