Wall clock time and date at job start Mon Mar 30 2020 05:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47362 * 2 1 4 4 C 1.50701 * 109.47071 * 119.99395 * 2 1 3 5 5 H 1.08004 * 120.00048 * 119.99883 * 4 2 1 6 6 C 1.37871 * 120.00312 * 300.00270 * 4 2 1 7 7 N 1.31516 * 119.99974 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00232 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47304 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47044 * 120.00202 * 8 6 4 11 11 H 1.48505 * 109.47489 * 239.99899 * 8 6 4 12 12 C 1.50700 * 109.47563 * 239.99398 * 2 1 3 13 13 O 1.21286 * 119.99509 * 334.61990 * 12 2 1 14 14 N 1.34776 * 120.00187 * 154.61034 * 12 2 1 15 15 C 1.48088 * 127.84629 * 354.82579 * 14 12 2 16 16 C 1.54282 * 104.76203 * 219.86625 * 15 14 12 17 17 C 1.52999 * 112.16175 * 213.25349 * 16 15 14 18 18 C 1.54390 * 109.35909 * 86.76016 * 16 15 14 19 19 O 1.44379 * 104.92678 * 272.73653 * 18 16 15 20 20 C 1.45421 * 105.75248 * 319.67349 * 19 18 16 21 21 C 1.54394 * 104.41105 * 39.86726 * 20 19 18 22 22 C 1.52999 * 112.70759 * 213.92425 * 21 20 19 23 23 C 1.48088 * 127.84952 * 174.79668 * 14 12 2 24 24 H 1.08994 * 109.47223 * 185.64886 * 1 2 3 25 25 H 1.09005 * 109.46973 * 305.65319 * 1 2 3 26 26 H 1.09006 * 109.46733 * 65.64827 * 1 2 3 27 27 H 0.97005 * 120.00078 * 180.02562 * 7 6 4 28 28 H 1.09002 * 110.38520 * 338.68379 * 15 14 12 29 29 H 1.09000 * 110.38594 * 100.93468 * 15 14 12 30 30 H 1.08997 * 109.47242 * 177.99625 * 17 16 15 31 31 H 1.09008 * 109.46366 * 297.99203 * 17 16 15 32 32 H 1.08996 * 109.47166 * 57.99057 * 17 16 15 33 33 H 1.09003 * 110.34511 * 31.59959 * 18 16 15 34 34 H 1.09002 * 110.34799 * 153.87152 * 18 16 15 35 35 H 1.09002 * 110.15727 * 281.38997 * 20 19 18 36 36 H 1.08999 * 111.03880 * 158.77723 * 20 19 18 37 37 H 1.08994 * 109.47216 * 297.43406 * 22 21 20 38 38 H 1.08998 * 109.46861 * 177.43675 * 22 21 20 39 39 H 1.09000 * 109.47299 * 57.43812 * 22 21 20 40 40 H 1.09004 * 110.37934 * 21.31753 * 23 14 12 41 41 H 1.09006 * 110.47236 * 259.02012 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.1464 -2.2867 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1660 -1.5864 4.8163 12 6 2.0324 -0.7105 -1.2304 13 8 1.3398 -1.5445 -1.7742 14 7 3.2512 -0.4191 -1.7264 15 6 4.1899 0.6318 -1.2710 16 6 4.7897 1.2123 -2.5686 17 6 6.2420 1.6572 -2.3846 18 6 3.8715 2.3342 -3.0996 19 8 2.8975 1.6586 -3.9239 20 6 3.6357 0.6391 -4.6522 21 6 4.6344 0.0756 -3.6184 22 6 5.9660 -0.3379 -4.2481 23 6 3.9560 -1.0774 -2.8502 24 1 -0.3633 -1.0226 0.1011 25 1 -0.3633 0.5990 0.8351 26 1 -0.3633 0.4238 -0.9363 27 1 0.7094 1.1620 3.4844 28 1 3.6553 1.4060 -0.7206 29 1 4.9734 0.1979 -0.6498 30 1 6.6321 2.0256 -3.3333 31 1 6.2868 2.4520 -1.6400 32 1 6.8414 0.8109 -2.0492 33 1 3.3790 2.8444 -2.2719 34 1 4.4457 3.0436 -3.6956 35 1 4.1698 1.0883 -5.4895 36 1 2.9703 -0.1489 -5.0049 37 1 5.7953 -1.1417 -4.9641 38 1 6.6447 -0.6838 -3.4685 39 1 6.4069 0.5174 -4.7603 40 1 3.2445 -1.5952 -3.4934 41 1 4.7044 -1.7752 -2.4744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598066448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:47 Heat of formation + Delta-G solvation = -103.750470 kcal Electronic energy + Delta-G solvation = -22140.428599 eV Core-core repulsion = 19019.225961 eV Total energy + Delta-G solvation = -3121.202638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09393 -39.93787 -36.99772 -35.84569 -34.18561 -33.26799 -32.36461 -28.15476 -27.31446 -27.19812 -27.02191 -26.58689 -23.84293 -22.14381 -20.23837 -19.46932 -18.50434 -18.07258 -17.26794 -16.90753 -16.39800 -16.28511 -15.76168 -15.52355 -14.92177 -14.73467 -14.58848 -14.46197 -13.99267 -13.85028 -13.61252 -13.17583 -13.00714 -12.88351 -12.74577 -12.64392 -12.57122 -12.35387 -12.24796 -12.12834 -12.04105 -11.83498 -11.44977 -11.34960 -11.12309 -10.75400 -10.64870 -10.37708 -9.54993 -8.20231 -6.35923 1.38920 1.41479 1.52758 1.87739 2.18478 2.42517 2.99891 3.08527 3.14681 3.42088 3.79671 3.94317 4.06119 4.13370 4.23978 4.37071 4.49765 4.57332 4.65616 4.66782 4.69348 4.76228 4.78367 4.80208 4.90104 4.92117 4.94430 5.00278 5.03767 5.22185 5.25390 5.27614 5.36408 5.44297 5.53573 5.63613 5.79535 5.90614 6.09176 6.65974 6.68924 7.30197 7.41737 8.86513 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.024269 B = 0.006314 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.477879 B = 4433.281166 C = 4710.893057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.037 3.963 3 H 0.034 0.966 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.026 3.974 7 N -0.908 5.908 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.268 1.268 11 H -0.279 1.279 12 C 0.546 3.454 13 O -0.605 6.605 14 N -0.621 5.621 15 C 0.115 3.885 16 C -0.094 4.094 17 C -0.120 4.120 18 C 0.054 3.946 19 O -0.407 6.407 20 C 0.054 3.946 21 C -0.093 4.093 22 C -0.120 4.120 23 C 0.106 3.894 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.017 0.983 27 H 0.268 0.732 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.244 3.748 -11.967 19.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.016 3.984 3 H 0.052 0.948 4 C -0.565 4.565 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.193 1.193 11 H -0.205 1.205 12 C 0.339 3.661 13 O -0.488 6.488 14 N -0.353 5.353 15 C -0.008 4.008 16 C -0.095 4.095 17 C -0.178 4.178 18 C -0.022 4.022 19 O -0.327 6.327 20 C -0.022 4.022 21 C -0.094 4.094 22 C -0.177 4.177 23 C -0.016 4.016 24 H 0.040 0.960 25 H 0.090 0.910 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.455 3.454 -12.082 19.153 hybrid contribution -0.393 -0.602 1.059 1.280 sum 14.062 2.852 -11.023 18.094 Atomic orbital electron populations 1.21426 0.96799 0.99488 0.98986 1.18738 0.94138 0.95752 0.89796 0.94776 1.20873 1.32639 1.12579 0.90423 0.93702 1.25661 0.94705 0.95501 1.01611 1.70002 1.36482 1.23502 1.24638 0.85426 0.78292 0.78638 0.78827 1.19713 1.19300 1.20466 1.21244 0.78965 0.81505 0.84378 1.90489 1.57541 1.37784 1.62967 1.48807 1.16105 1.36106 1.34236 1.22520 0.91752 0.90202 0.96313 1.22921 0.98170 0.94772 0.93684 1.21633 0.90348 1.02213 1.03577 1.23586 0.89973 0.94305 0.94357 1.89259 1.33458 1.50448 1.59504 1.23792 0.93481 0.90605 0.94323 1.22870 0.97459 0.94244 0.94831 1.21630 0.92431 1.02654 1.00983 1.22485 0.95152 0.95557 0.88420 0.95959 0.90958 0.96412 0.92274 0.91599 0.90399 0.89495 0.91435 0.90727 0.90544 0.89249 0.89124 0.90629 0.91343 0.90722 0.89547 0.92235 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.03 8.32 71.98 0.60 -5.43 16 2 C 0.04 2.01 2.25 -12.29 -0.03 1.98 16 3 H 0.03 1.90 6.63 -2.39 -0.02 1.89 16 4 C -0.53 -29.98 8.55 25.60 0.22 -29.76 16 5 H 0.04 2.60 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.41 5.30 84.65 0.45 1.86 16 7 N -0.91 -51.39 11.38 21.45 0.24 -51.14 16 8 Si 0.96 43.25 29.54 68.60 2.03 45.28 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.55 28.22 6.95 87.66 0.61 28.83 16 13 O -0.61 -34.75 16.46 -3.05 -0.05 -34.80 16 14 N -0.62 -25.30 3.21 -808.69 -2.60 -27.90 16 15 C 0.11 3.78 5.89 86.51 0.51 4.28 16 16 C -0.09 -2.17 1.10 -50.41 -0.06 -2.22 16 17 C -0.12 -1.73 7.71 71.98 0.55 -1.17 16 18 C 0.05 1.38 6.70 72.45 0.49 1.87 16 19 O -0.41 -13.32 11.56 -148.98 -1.72 -15.04 16 20 C 0.05 1.34 6.75 72.46 0.49 1.83 16 21 C -0.09 -2.08 1.09 -50.42 -0.06 -2.14 16 22 C -0.12 -1.59 7.70 71.98 0.55 -1.04 16 23 C 0.11 3.37 6.07 86.50 0.53 3.90 16 24 H 0.02 1.24 8.05 -2.39 -0.02 1.22 16 25 H 0.07 4.11 6.24 -2.38 -0.01 4.10 16 26 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 28 H 0.07 2.45 6.02 -2.39 -0.01 2.43 16 29 H 0.08 2.39 7.97 -2.39 -0.02 2.37 16 30 H 0.09 0.85 7.26 -2.39 -0.02 0.83 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 0.97 7.24 -2.39 -0.02 0.95 16 33 H 0.08 2.17 7.54 -2.39 -0.02 2.15 16 34 H 0.09 1.67 8.01 -2.39 -0.02 1.65 16 35 H 0.09 1.63 7.99 -2.39 -0.02 1.61 16 36 H 0.08 2.06 7.48 -2.39 -0.02 2.05 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.90 7.21 -2.39 -0.02 0.88 16 39 H 0.09 0.79 7.29 -2.39 -0.02 0.77 16 40 H 0.06 2.10 7.19 -2.38 -0.02 2.08 16 41 H 0.08 2.21 7.99 -2.38 -0.02 2.19 16 Total: -1.00 -72.51 318.43 3.76 -68.74 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.01 Total: 12.06 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 4.86 Total: 2.79 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.35 Total: -79.04 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.77 Total: -49.84 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -72.51 3.76 -68.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598066448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.008 kcal (2) G-P(sol) polarization free energy of solvation -72.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds