Wall clock time and date at job start Mon Mar 30 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00034 * 2 1 4 4 C 1.52995 * 109.47225 * 121.35759 * 3 2 1 5 5 N 1.46493 * 109.54726 * 305.31387 * 4 3 2 6 6 C 1.34782 * 119.99684 * 303.19192 * 5 4 3 7 7 O 1.21283 * 120.00034 * 354.59812 * 6 5 4 8 8 C 1.50706 * 120.00001 * 174.59603 * 6 5 4 9 9 H 1.08998 * 109.46873 * 300.00435 * 8 6 5 10 10 C 1.52999 * 109.46906 * 59.99725 * 8 6 5 11 11 C 1.50694 * 109.46951 * 179.97438 * 8 6 5 12 12 H 1.07997 * 120.00360 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99841 * 179.97438 * 11 8 6 14 14 N 1.31518 * 120.00059 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 119.99944 * 359.97438 * 13 11 8 16 16 H 1.48504 * 109.46811 * 90.00213 * 15 13 11 17 17 H 1.48494 * 109.47228 * 209.99931 * 15 13 11 18 18 H 1.48497 * 109.47406 * 330.00112 * 15 13 11 19 19 C 1.53180 * 109.54701 * 185.13093 * 4 3 2 20 20 C 1.53100 * 109.15805 * 183.24199 * 19 4 3 21 21 O 1.42906 * 109.48744 * 57.48189 * 20 19 4 22 22 C 1.42906 * 114.09301 * 298.88436 * 21 20 19 23 23 C 1.53093 * 109.41323 * 61.16002 * 22 21 20 24 24 H 1.08004 * 120.00405 * 359.72174 * 1 2 3 25 25 H 1.07999 * 120.00473 * 179.72543 * 1 2 3 26 26 H 1.07995 * 120.00433 * 180.28048 * 2 1 3 27 27 H 1.09000 * 109.47155 * 241.36211 * 3 2 1 28 28 H 1.09000 * 109.46902 * 1.35793 * 3 2 1 29 29 H 0.97002 * 120.00499 * 123.19056 * 5 4 3 30 30 H 1.09007 * 109.47035 * 60.00518 * 10 8 6 31 31 H 1.09002 * 109.46980 * 179.97438 * 10 8 6 32 32 H 1.08995 * 109.47694 * 300.00027 * 10 8 6 33 33 H 0.97000 * 119.99683 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.52434 * 303.06512 * 19 4 3 35 35 H 1.09009 * 109.51980 * 63.24953 * 19 4 3 36 36 H 1.08998 * 109.41083 * 297.49087 * 20 19 4 37 37 H 1.09008 * 109.48694 * 177.50912 * 20 19 4 38 38 H 1.08998 * 109.47971 * 301.17584 * 22 21 20 39 39 H 1.08999 * 109.48477 * 181.14707 * 22 21 20 40 40 H 1.09007 * 109.52018 * 182.48518 * 23 22 21 41 41 H 1.08995 * 109.57667 * 62.32670 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9685 1.3715 1.2318 5 7 2.1691 1.1529 2.4397 6 6 1.1148 1.9502 2.7035 7 8 0.8862 2.9075 1.9948 8 6 0.2200 1.6520 3.8789 9 1 -0.2216 0.6629 3.7576 10 6 1.0428 1.6885 5.1683 11 6 -0.8740 2.6857 3.9523 12 1 -0.9169 3.4795 3.2212 13 6 -1.8203 2.6182 4.9528 14 7 -2.7755 3.5200 5.0165 15 14 -1.7466 1.2449 6.2169 16 1 -0.9182 1.6782 7.3707 17 1 -3.1199 0.9284 6.6847 18 1 -1.1429 0.0363 5.6003 19 6 3.6380 2.7474 1.3023 20 6 4.6025 2.7766 2.4909 21 8 5.5639 1.7286 2.3505 22 6 4.9976 0.4167 2.3276 23 6 4.0507 0.2920 1.1312 24 1 -0.5401 0.9353 0.0045 25 1 -0.5401 -0.9352 -0.0045 26 1 1.8500 -0.9352 -0.0046 27 1 2.6717 1.3735 -0.9019 28 1 1.3554 2.1334 0.0244 29 1 2.3984 0.4345 3.0498 30 1 1.4845 2.6777 5.2896 31 1 0.3956 1.4733 6.0185 32 1 1.8344 0.9411 5.1155 33 1 -3.4409 3.4727 5.7207 34 1 4.1912 2.9310 0.3812 35 1 2.8765 3.5169 1.4304 36 1 4.0426 2.6349 3.4153 37 1 5.1148 3.7383 2.5200 38 1 4.4429 0.2441 3.2499 39 1 5.7945 -0.3218 2.2391 40 1 3.5841 -0.6931 1.1371 41 1 4.6117 0.4237 0.2061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598178113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:54 Heat of formation + Delta-G solvation = -65.254227 kcal Electronic energy + Delta-G solvation = -22099.401703 eV Core-core repulsion = 18979.868387 eV Total energy + Delta-G solvation = -3119.533315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49462 -38.17455 -35.91293 -33.82214 -33.25096 -31.70826 -31.13108 -30.49350 -27.42671 -25.14272 -23.74617 -23.52400 -22.63314 -19.99109 -19.58454 -18.65268 -16.77849 -16.60868 -15.98256 -15.95153 -15.43459 -14.81747 -14.76284 -14.42123 -14.02731 -13.59870 -13.35936 -13.02463 -12.85357 -12.46746 -12.40535 -12.21903 -12.10587 -11.57288 -11.37762 -11.33816 -11.12026 -10.96429 -10.60186 -10.48914 -10.27085 -10.21728 -9.65522 -9.56031 -9.10442 -9.07869 -8.59887 -8.52826 -8.41659 -6.05335 -4.05061 2.56467 3.22211 3.29990 3.35522 3.59730 3.74517 3.89965 4.37447 4.59652 4.84295 4.86333 5.05132 5.17077 5.24642 5.30785 5.38046 5.46856 5.51908 5.66092 5.75663 5.82268 5.87111 5.90493 6.01307 6.08842 6.11352 6.22099 6.31853 6.33856 6.39340 6.45353 6.72739 6.90453 6.99860 7.13342 7.16844 7.20884 7.56013 8.16430 8.56020 9.11746 9.17495 9.54400 11.07644 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.006781 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.480404 B = 4128.003194 C = 4609.859669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.154 4.154 3 C -0.104 4.104 4 C 0.186 3.814 5 N -0.738 5.738 6 C 0.536 3.464 7 O -0.527 6.527 8 C -0.006 4.006 9 H 0.050 0.950 10 C -0.145 4.145 11 C -0.502 4.502 12 H 0.094 0.906 13 C 0.070 3.930 14 N -0.896 5.896 15 Si 0.883 3.117 16 H -0.279 1.279 17 H -0.296 1.296 18 H -0.268 1.268 19 C -0.166 4.166 20 C 0.063 3.937 21 O -0.386 6.386 22 C 0.061 3.939 23 C -0.157 4.157 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.391 0.609 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.348 -8.931 -6.446 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.172 4.172 3 C -0.142 4.142 4 C 0.100 3.900 5 N -0.393 5.393 6 C 0.324 3.676 7 O -0.401 6.401 8 C -0.027 4.027 9 H 0.068 0.932 10 C -0.202 4.202 11 C -0.540 4.540 12 H 0.111 0.889 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.713 3.287 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.193 1.193 19 C -0.204 4.204 20 C -0.013 4.013 21 O -0.305 6.305 22 C -0.016 4.016 23 C -0.195 4.195 24 H 0.119 0.881 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.225 0.775 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.180 -8.117 -6.897 17.735 hybrid contribution -0.325 -1.245 1.166 1.736 sum 13.855 -9.362 -5.732 17.677 Atomic orbital electron populations 1.23909 0.96105 1.01936 0.99817 1.22684 0.95867 0.97593 1.01043 1.21166 0.99364 0.97293 0.96341 1.20103 0.89716 0.94202 0.85988 1.46352 1.31806 1.36205 1.24904 1.21094 0.79221 0.81012 0.86232 1.90504 1.71140 1.28271 1.50230 1.19309 0.94225 0.99943 0.89237 0.93242 1.22126 0.98562 1.00551 0.99003 1.20928 1.07576 1.11470 1.14057 0.88856 1.24978 0.95197 0.95576 0.97385 1.69884 1.15214 1.34738 1.33626 0.86940 0.76162 0.83326 0.82250 1.20606 1.22352 1.19338 1.22618 0.99724 0.98903 0.99196 1.22558 0.90598 0.90459 0.97683 1.87891 1.33703 1.14516 1.94366 1.22539 0.96964 0.85216 0.96915 1.22495 0.97082 0.99493 1.00400 0.88138 0.89041 0.88239 0.91216 0.88813 0.77475 0.92428 0.93344 0.95104 0.92622 0.91077 0.88146 0.92736 0.89137 0.93203 0.89052 0.90270 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 14.32 29.02 0.42 -2.28 16 2 C -0.15 -2.07 8.38 -36.02 -0.30 -2.37 16 3 C -0.10 -1.46 4.37 -27.88 -0.12 -1.58 16 4 C 0.19 2.50 0.35 -131.64 -0.05 2.45 16 5 N -0.74 -11.33 3.62 -47.44 -0.17 -11.50 16 6 C 0.54 10.92 6.51 -10.98 -0.07 10.85 16 7 O -0.53 -12.37 11.76 5.56 0.07 -12.31 16 8 C -0.01 -0.13 2.24 -92.92 -0.21 -0.33 16 9 H 0.05 1.12 7.20 -51.93 -0.37 0.75 16 10 C -0.14 -2.93 8.57 37.16 0.32 -2.61 16 11 C -0.50 -14.23 8.95 -34.44 -0.31 -14.53 16 12 H 0.09 3.01 7.00 -52.49 -0.37 2.64 16 13 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 14 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 15 Si 0.88 21.29 24.38 -169.99 -4.14 17.14 16 16 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 17 H -0.30 -7.22 7.11 56.52 0.40 -6.81 16 18 H -0.27 -6.03 6.53 56.52 0.37 -5.66 16 19 C -0.17 -2.33 4.81 -26.59 -0.13 -2.46 16 20 C 0.06 0.85 6.68 37.21 0.25 1.10 16 21 O -0.39 -5.03 10.77 -35.23 -0.38 -5.41 16 22 C 0.06 0.64 6.67 37.21 0.25 0.88 16 23 C -0.16 -1.62 4.74 -26.59 -0.13 -1.75 16 24 H 0.10 1.73 7.83 -52.48 -0.41 1.32 16 25 H 0.09 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.10 1.13 7.19 -52.49 -0.38 0.76 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.64 5.95 -51.93 -0.31 1.33 16 29 H 0.39 5.26 6.71 -40.82 -0.27 4.98 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 32 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 1.72 6.18 -51.92 -0.32 1.40 16 36 H 0.05 0.79 7.75 -51.93 -0.40 0.39 16 37 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.05 0.52 7.04 -51.93 -0.37 0.15 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.73 6.97 -51.93 -0.36 0.36 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -31.76 312.78 -5.58 -37.34 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.26 Total: 7.51 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -0.18 Total: -10.72 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.60 Total: -38.28 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.31 Total: -17.71 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.76 -5.58 -37.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598178113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.914 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds