Wall clock time and date at job start Mon Mar 30 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00034 * 2 1 4 4 C 1.52995 * 109.47225 * 121.35759 * 3 2 1 5 5 N 1.46493 * 109.54726 * 305.31387 * 4 3 2 6 6 C 1.34782 * 119.99684 * 303.19192 * 5 4 3 7 7 O 1.21283 * 120.00034 * 354.59812 * 6 5 4 8 8 C 1.50706 * 120.00001 * 174.59603 * 6 5 4 9 9 H 1.08998 * 109.46873 * 300.00435 * 8 6 5 10 10 C 1.52999 * 109.46906 * 59.99725 * 8 6 5 11 11 C 1.50694 * 109.46951 * 179.97438 * 8 6 5 12 12 H 1.07997 * 120.00360 * 359.97438 * 11 8 6 13 13 C 1.37881 * 119.99841 * 179.97438 * 11 8 6 14 14 N 1.31518 * 120.00059 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 119.99944 * 359.97438 * 13 11 8 16 16 H 1.48504 * 109.46811 * 90.00213 * 15 13 11 17 17 H 1.48494 * 109.47228 * 209.99931 * 15 13 11 18 18 H 1.48497 * 109.47406 * 330.00112 * 15 13 11 19 19 C 1.53180 * 109.54701 * 185.13093 * 4 3 2 20 20 C 1.53100 * 109.15805 * 183.24199 * 19 4 3 21 21 O 1.42906 * 109.48744 * 57.48189 * 20 19 4 22 22 C 1.42906 * 114.09301 * 298.88436 * 21 20 19 23 23 C 1.53093 * 109.41323 * 61.16002 * 22 21 20 24 24 H 1.08004 * 120.00405 * 359.72174 * 1 2 3 25 25 H 1.07999 * 120.00473 * 179.72543 * 1 2 3 26 26 H 1.07995 * 120.00433 * 180.28048 * 2 1 3 27 27 H 1.09000 * 109.47155 * 241.36211 * 3 2 1 28 28 H 1.09000 * 109.46902 * 1.35793 * 3 2 1 29 29 H 0.97002 * 120.00499 * 123.19056 * 5 4 3 30 30 H 1.09007 * 109.47035 * 60.00518 * 10 8 6 31 31 H 1.09002 * 109.46980 * 179.97438 * 10 8 6 32 32 H 1.08995 * 109.47694 * 300.00027 * 10 8 6 33 33 H 0.97000 * 119.99683 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.52434 * 303.06512 * 19 4 3 35 35 H 1.09009 * 109.51980 * 63.24953 * 19 4 3 36 36 H 1.08998 * 109.41083 * 297.49087 * 20 19 4 37 37 H 1.09008 * 109.48694 * 177.50912 * 20 19 4 38 38 H 1.08998 * 109.47971 * 301.17584 * 22 21 20 39 39 H 1.08999 * 109.48477 * 181.14707 * 22 21 20 40 40 H 1.09007 * 109.52018 * 182.48518 * 23 22 21 41 41 H 1.08995 * 109.57667 * 62.32670 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9685 1.3715 1.2318 5 7 2.1691 1.1529 2.4397 6 6 1.1148 1.9502 2.7035 7 8 0.8862 2.9075 1.9948 8 6 0.2200 1.6520 3.8789 9 1 -0.2216 0.6629 3.7576 10 6 1.0428 1.6885 5.1683 11 6 -0.8740 2.6857 3.9523 12 1 -0.9169 3.4795 3.2212 13 6 -1.8203 2.6182 4.9528 14 7 -2.7755 3.5200 5.0165 15 14 -1.7466 1.2449 6.2169 16 1 -0.9182 1.6782 7.3707 17 1 -3.1199 0.9284 6.6847 18 1 -1.1429 0.0363 5.6003 19 6 3.6380 2.7474 1.3023 20 6 4.6025 2.7766 2.4909 21 8 5.5639 1.7286 2.3505 22 6 4.9976 0.4167 2.3276 23 6 4.0507 0.2920 1.1312 24 1 -0.5401 0.9353 0.0045 25 1 -0.5401 -0.9352 -0.0045 26 1 1.8500 -0.9352 -0.0046 27 1 2.6717 1.3735 -0.9019 28 1 1.3554 2.1334 0.0244 29 1 2.3984 0.4345 3.0498 30 1 1.4845 2.6777 5.2896 31 1 0.3956 1.4733 6.0185 32 1 1.8344 0.9411 5.1155 33 1 -3.4409 3.4727 5.7207 34 1 4.1912 2.9310 0.3812 35 1 2.8765 3.5169 1.4304 36 1 4.0426 2.6349 3.4153 37 1 5.1148 3.7383 2.5200 38 1 4.4429 0.2441 3.2499 39 1 5.7945 -0.3218 2.2391 40 1 3.5841 -0.6931 1.1371 41 1 4.6117 0.4237 0.2061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598178113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:53 Heat of formation + Delta-G solvation = -88.358911 kcal Electronic energy + Delta-G solvation = -22100.403597 eV Core-core repulsion = 18979.868387 eV Total energy + Delta-G solvation = -3120.535210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73017 -39.51785 -37.12821 -35.73204 -34.52223 -33.49780 -32.08644 -31.97798 -28.51690 -27.10965 -25.11076 -24.70205 -23.84208 -21.41733 -20.77328 -19.98081 -18.74743 -18.07187 -17.04279 -16.93254 -16.83825 -16.56436 -16.04994 -15.62470 -15.30197 -15.00453 -14.83854 -14.63524 -14.13755 -13.91181 -13.78643 -13.57029 -13.22405 -13.12143 -12.80653 -12.53732 -12.49997 -12.27408 -12.14639 -12.11202 -11.52016 -11.45126 -11.26320 -11.20354 -10.76427 -10.59220 -10.26384 -10.12564 -9.76477 -8.26568 -6.33153 1.31337 1.37722 1.43059 1.48729 1.98922 2.33491 2.41423 2.98654 3.07546 3.58958 3.83135 3.89766 4.05870 4.15371 4.20967 4.31318 4.37327 4.42546 4.49194 4.58680 4.61739 4.73935 4.77917 4.81763 4.86198 4.88949 5.01550 5.04252 5.12026 5.15574 5.16872 5.25211 5.45273 5.55281 5.73268 5.75582 6.00793 6.27289 6.28866 6.73204 6.92642 7.28719 7.63599 8.91147 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021459 B = 0.006781 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.480404 B = 4128.003194 C = 4609.859669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.106 4.106 4 C 0.184 3.816 5 N -0.715 5.715 6 C 0.537 3.463 7 O -0.569 6.569 8 C -0.010 4.010 9 H 0.061 0.939 10 C -0.140 4.140 11 C -0.513 4.513 12 H 0.030 0.970 13 C 0.005 3.995 14 N -0.954 5.954 15 Si 0.957 3.043 16 H -0.262 1.262 17 H -0.301 1.301 18 H -0.232 1.232 19 C -0.165 4.165 20 C 0.070 3.930 21 O -0.394 6.394 22 C 0.052 3.948 23 C -0.146 4.146 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.406 0.594 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.511 -13.018 -5.770 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.153 4.153 3 C -0.144 4.144 4 C 0.098 3.902 5 N -0.370 5.370 6 C 0.325 3.675 7 O -0.447 6.447 8 C -0.031 4.031 9 H 0.079 0.921 10 C -0.197 4.197 11 C -0.552 4.552 12 H 0.049 0.951 13 C -0.191 4.191 14 N -0.594 5.594 15 Si 0.782 3.218 16 H -0.188 1.188 17 H -0.229 1.229 18 H -0.156 1.156 19 C -0.203 4.203 20 C -0.007 4.007 21 O -0.313 6.313 22 C -0.024 4.024 23 C -0.184 4.184 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.156 0.844 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.243 0.757 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.403 -12.247 -6.233 22.174 hybrid contribution -1.284 0.135 0.819 1.529 sum 16.119 -12.112 -5.414 20.876 Atomic orbital electron populations 1.23861 0.97011 1.01008 1.02425 1.22923 0.95250 0.98492 0.98586 1.21161 0.99042 0.96281 0.97936 1.20299 0.90143 0.95381 0.84374 1.46045 1.30087 1.35138 1.25692 1.20711 0.80237 0.81167 0.85360 1.90522 1.72489 1.30323 1.51323 1.19245 0.93695 0.98173 0.92036 0.92122 1.22019 0.99335 1.01734 0.96625 1.21092 1.09994 1.11452 1.12630 0.95119 1.26003 0.94327 0.98708 1.00024 1.70083 1.16626 1.37670 1.35060 0.85748 0.76356 0.80494 0.79203 1.18810 1.22905 1.15553 1.22550 0.99035 0.98302 1.00433 1.22429 0.90462 0.91396 0.96428 1.87896 1.33650 1.15391 1.94325 1.22829 0.98091 0.84474 0.97020 1.22484 0.95745 0.98885 1.01266 0.92167 0.87123 0.84350 0.88722 0.93326 0.75678 0.93590 0.93882 0.89899 0.92556 0.89606 0.92127 0.94086 0.88579 0.92796 0.86140 0.87861 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.09 14.32 67.79 0.97 -5.12 16 2 C -0.13 -3.30 8.38 25.65 0.22 -3.09 16 3 C -0.11 -2.86 4.37 29.85 0.13 -2.73 16 4 C 0.18 4.51 0.35 3.72 0.00 4.51 16 5 N -0.72 -20.44 3.62 -422.38 -1.53 -21.97 16 6 C 0.54 22.14 6.51 87.66 0.57 22.71 16 7 O -0.57 -28.58 11.76 -3.04 -0.04 -28.62 16 8 C -0.01 -0.44 2.24 -12.29 -0.03 -0.47 16 9 H 0.06 2.61 7.20 -2.39 -0.02 2.60 16 10 C -0.14 -5.27 8.57 71.98 0.62 -4.66 16 11 C -0.51 -30.52 8.95 25.60 0.23 -30.29 16 12 H 0.03 2.15 7.00 -2.91 -0.02 2.13 16 13 C 0.01 0.32 5.45 84.66 0.46 0.78 16 14 N -0.95 -61.62 13.96 21.45 0.30 -61.32 16 15 Si 0.96 43.45 24.38 68.60 1.67 45.12 16 16 H -0.26 -11.17 6.87 99.48 0.68 -10.49 16 17 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 18 H -0.23 -9.15 6.53 99.48 0.65 -8.50 16 19 C -0.16 -4.51 4.81 30.69 0.15 -4.36 16 20 C 0.07 1.75 6.68 72.02 0.48 2.23 16 21 O -0.39 -8.86 10.77 -148.98 -1.60 -10.46 16 22 C 0.05 0.83 6.67 72.01 0.48 1.31 16 23 C -0.15 -2.27 4.74 30.69 0.15 -2.13 16 24 H 0.06 2.25 7.83 -2.91 -0.02 2.23 16 25 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 26 H 0.14 2.39 7.19 -2.91 -0.02 2.37 16 27 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.05 1.79 5.95 -2.39 -0.01 1.78 16 29 H 0.41 9.16 6.71 -92.71 -0.62 8.54 16 30 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 32 H 0.08 2.25 7.45 -2.39 -0.02 2.23 16 33 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 2.18 6.18 -2.38 -0.01 2.17 16 36 H 0.04 1.13 7.75 -2.39 -0.02 1.11 16 37 H 0.10 2.25 8.14 -2.38 -0.02 2.24 16 38 H 0.05 0.83 7.04 -2.39 -0.02 0.81 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.19 6.97 -2.38 -0.02 1.17 16 41 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -76.78 312.78 3.54 -73.23 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.32 Total: 25.33 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 4.42 Total: -21.30 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.23 Total: -83.30 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.64 Total: -39.08 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.67 Total: 45.12 kcal Total: -76.78 3.54 -73.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598178113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.127 kcal (2) G-P(sol) polarization free energy of solvation -76.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds