Wall clock time and date at job start Mon Mar 30 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.50701 * 109.47513 * 119.99886 * 2 1 3 5 5 H 1.07997 * 120.00220 * 120.00000 * 4 2 1 6 6 C 1.37876 * 120.00069 * 300.00486 * 4 2 1 7 7 N 1.31525 * 119.99981 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00265 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47004 * 59.99929 * 8 6 4 10 10 H 1.48497 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46941 * 299.99798 * 8 6 4 12 12 C 1.50697 * 109.47575 * 240.00451 * 2 1 3 13 13 O 1.21289 * 119.99940 * 274.72029 * 12 2 1 14 14 N 1.34775 * 120.00442 * 94.71282 * 12 2 1 15 15 C 1.46923 * 120.62904 * 354.59910 * 14 12 2 16 16 C 1.53184 * 108.77992 * 233.62613 * 15 14 12 17 17 C 1.53043 * 109.31464 * 305.37170 * 16 15 14 18 18 C 1.53038 * 109.53976 * 61.35540 * 17 16 15 19 19 O 1.42898 * 109.49587 * 58.59530 * 18 17 16 20 20 C 1.53000 * 109.49845 * 178.68670 * 18 17 16 21 21 C 1.53006 * 117.49773 * 13.62595 * 20 18 17 22 22 C 1.53001 * 59.99894 * 252.51046 * 21 20 18 23 23 C 1.46927 * 120.63021 * 174.61833 * 14 12 2 24 24 H 1.08997 * 109.46762 * 185.06879 * 1 2 3 25 25 H 1.09000 * 109.47254 * 305.06848 * 1 2 3 26 26 H 1.08999 * 109.46841 * 65.07203 * 1 2 3 27 27 H 0.96995 * 119.99990 * 179.97438 * 7 6 4 28 28 H 1.09008 * 109.58281 * 113.83863 * 15 14 12 29 29 H 1.08999 * 109.58840 * 353.42372 * 15 14 12 30 30 H 1.08995 * 109.49638 * 65.31700 * 16 15 14 31 31 H 1.08995 * 109.50339 * 185.41786 * 16 15 14 32 32 H 1.08992 * 109.46513 * 181.38457 * 17 16 15 33 33 H 1.09007 * 109.45680 * 301.35321 * 17 16 15 34 34 H 0.96707 * 113.99626 * 299.99898 * 19 18 17 35 35 H 1.08992 * 115.55204 * 159.33245 * 20 18 17 36 36 H 1.09003 * 117.49870 * 359.97438 * 21 20 18 37 37 H 1.08997 * 117.49686 * 145.02260 * 21 20 18 38 38 H 1.08998 * 117.49607 * 252.50815 * 22 21 20 39 39 H 1.09001 * 117.49874 * 107.48912 * 22 21 20 40 40 H 1.08998 * 109.58968 * 6.58752 * 23 14 12 41 41 H 1.09000 * 109.70558 * 246.22528 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1207 4.0081 10 1 1.8270 -0.4198 5.2204 11 1 1.8260 -2.5202 4.0077 12 6 2.0324 -0.7103 -1.2305 13 8 2.1531 -1.9171 -1.2272 14 7 2.3475 -0.0046 -2.3346 15 6 2.0961 1.4417 -2.3956 16 6 1.2677 1.7458 -3.6478 17 6 1.9820 1.1795 -4.8771 18 6 2.1106 -0.3393 -4.7400 19 8 0.8110 -0.9176 -4.6038 20 6 2.7955 -0.9082 -5.9843 21 6 3.4882 0.0809 -6.9239 22 6 2.1746 -0.5817 -7.3440 23 6 2.9486 -0.6670 -3.5002 24 1 -0.3633 -1.0236 0.0908 25 1 -0.3634 0.5904 0.8411 26 1 -0.3633 0.4331 -0.9319 27 1 0.7088 1.1613 3.4844 28 1 3.0450 1.9757 -2.4467 29 1 1.5457 1.7547 -1.5084 30 1 0.2844 1.2851 -3.5541 31 1 1.1557 2.8245 -3.7569 32 1 1.4069 1.4159 -5.7723 33 1 2.9750 1.6222 -4.9561 34 1 0.3190 -0.6023 -3.8332 35 1 3.2515 -1.8906 -5.8621 36 1 3.4557 1.1369 -6.6558 37 1 4.4003 -0.2508 -7.4200 38 1 2.2226 -1.3491 -8.1165 39 1 1.2782 0.0384 -7.3521 40 1 2.9606 -1.7453 -3.3418 41 1 3.9676 -0.3071 -3.6425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598183445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:20 Heat of formation + Delta-G solvation = -63.195196 kcal Electronic energy + Delta-G solvation = -21708.914492 eV Core-core repulsion = 18589.470463 eV Total energy + Delta-G solvation = -3119.444029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37741 -38.36716 -36.13228 -34.80350 -33.78756 -31.90111 -30.83314 -29.52333 -25.45744 -25.19142 -24.18401 -22.58237 -22.18971 -21.37033 -19.23360 -18.27219 -17.14082 -16.54155 -16.12567 -15.63767 -15.35814 -14.88544 -14.44833 -14.21013 -13.93816 -13.60822 -13.06576 -12.88490 -12.72052 -12.49223 -12.02506 -11.67676 -11.50602 -11.43944 -11.06920 -10.98234 -10.94266 -10.72789 -10.70636 -10.64835 -10.52917 -10.26712 -10.17231 -10.05876 -9.82036 -9.02244 -8.60322 -8.31497 -8.06744 -6.06704 -4.09880 3.34081 3.36864 3.41144 3.51212 3.61005 3.66900 4.31441 4.44231 4.60944 4.67222 4.80865 4.88813 4.95521 5.11336 5.24951 5.27589 5.37203 5.46407 5.56741 5.62428 5.72231 5.82541 5.83681 5.90858 5.99496 6.01749 6.03977 6.12014 6.26808 6.33916 6.63740 6.82009 6.96884 7.04537 7.42649 7.73711 7.77858 7.93470 8.06190 8.34140 8.93648 9.18035 9.54724 11.00883 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039000 B = 0.004854 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.767930 B = 5766.923883 C = 6013.317060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.032 3.968 3 H 0.047 0.953 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.524 3.476 13 O -0.544 6.544 14 N -0.630 5.630 15 C 0.104 3.896 16 C -0.139 4.139 17 C -0.146 4.146 18 C 0.153 3.847 19 O -0.553 6.553 20 C -0.139 4.139 21 C -0.178 4.178 22 C -0.166 4.166 23 C 0.088 3.912 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.009 0.991 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.377 0.623 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 4.569 -16.410 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.540 4.540 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.316 3.684 13 O -0.419 6.419 14 N -0.366 5.366 15 C -0.019 4.019 16 C -0.177 4.177 17 C -0.184 4.184 18 C 0.111 3.889 19 O -0.360 6.360 20 C -0.158 4.158 21 C -0.215 4.215 22 C -0.203 4.203 23 C -0.035 4.035 24 H 0.056 0.944 25 H 0.109 0.891 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.226 0.774 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.303 3.703 -16.763 17.321 hybrid contribution 0.221 -0.053 1.282 1.302 sum 2.523 3.650 -15.481 16.104 Atomic orbital electron populations 1.21691 0.96101 1.01039 0.99734 1.18916 0.94318 0.96555 0.89106 0.93497 1.20969 1.31442 1.12401 0.89143 0.91666 1.24915 0.95014 0.95013 0.99018 1.69863 1.36834 1.22926 1.23726 0.86511 0.79183 0.79868 0.81636 1.20243 1.21270 1.20099 1.22095 0.74692 0.87795 0.83814 1.90541 1.53181 1.15168 1.83027 1.48406 1.64505 1.08453 1.15227 1.21782 0.99737 0.81290 0.99124 1.21983 0.99576 1.01448 0.94734 1.22321 1.01534 0.95883 0.98644 1.20872 0.83897 0.91178 0.92918 1.86461 1.28118 1.70101 1.51294 1.22027 1.03478 1.00211 0.90093 1.23146 0.96599 0.98746 1.03035 1.22834 0.96770 1.03387 0.97269 1.22072 0.95901 1.00453 0.85096 0.94414 0.89062 0.97154 0.92829 0.92013 0.87979 0.91421 0.90392 0.91205 0.90679 0.77362 0.87322 0.88099 0.88650 0.88949 0.88591 0.88615 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.77 37.16 0.33 -2.64 16 2 C 0.03 0.79 1.83 -92.93 -0.17 0.62 16 3 H 0.05 1.15 6.19 -51.93 -0.32 0.83 16 4 C -0.50 -14.11 8.32 -34.44 -0.29 -14.40 16 5 H 0.07 1.94 7.25 -52.49 -0.38 1.56 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.70 11.38 55.43 0.63 -24.07 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.52 12.01 6.68 -10.99 -0.07 11.94 16 13 O -0.54 -14.36 15.52 5.55 0.09 -14.27 16 14 N -0.63 -11.19 2.55 -172.77 -0.44 -11.63 16 15 C 0.10 1.50 6.15 -3.72 -0.02 1.48 16 16 C -0.14 -1.60 5.78 -26.61 -0.15 -1.76 16 17 C -0.15 -1.61 3.56 -26.69 -0.10 -1.70 16 18 C 0.15 2.03 0.93 -90.50 -0.08 1.95 16 19 O -0.55 -8.60 12.91 -35.23 -0.45 -9.05 16 20 C -0.14 -1.62 5.35 -90.62 -0.49 -2.10 16 21 C -0.18 -1.61 9.65 -26.73 -0.26 -1.87 16 22 C -0.17 -1.66 9.84 -26.73 -0.26 -1.92 16 23 C 0.09 1.40 5.39 -3.71 -0.02 1.38 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.09 2.28 6.22 -51.93 -0.32 1.96 16 26 H 0.01 0.19 8.12 -51.93 -0.42 -0.23 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.10 1.63 5.51 -51.93 -0.29 1.34 16 30 H 0.07 0.82 6.70 -51.93 -0.35 0.47 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.72 6.88 -51.93 -0.36 0.36 16 33 H 0.07 0.75 6.84 -51.93 -0.36 0.39 16 34 H 0.38 5.79 6.86 45.56 0.31 6.11 16 35 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 0.85 5.91 -51.93 -0.31 0.54 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.98 7.28 -51.93 -0.38 0.61 16 40 H 0.10 1.76 7.00 -51.93 -0.36 1.40 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 316.83 15.07 4.77 4.77 Total: -1.00 -30.90 316.83 -7.73 -38.63 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.62 Total: 6.43 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.68 Total: -7.44 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.19 Total: -35.69 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.37 Total: -23.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.90 -7.73 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598183445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.569 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds