Wall clock time and date at job start Mon Mar 30 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46981 * 2 1 4 4 C 1.50701 * 109.47513 * 119.99886 * 2 1 3 5 5 H 1.07997 * 120.00220 * 120.00000 * 4 2 1 6 6 C 1.37876 * 120.00069 * 300.00486 * 4 2 1 7 7 N 1.31525 * 119.99981 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00265 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47004 * 59.99929 * 8 6 4 10 10 H 1.48497 * 109.47177 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46941 * 299.99798 * 8 6 4 12 12 C 1.50697 * 109.47575 * 240.00451 * 2 1 3 13 13 O 1.21289 * 119.99940 * 274.72029 * 12 2 1 14 14 N 1.34775 * 120.00442 * 94.71282 * 12 2 1 15 15 C 1.46923 * 120.62904 * 354.59910 * 14 12 2 16 16 C 1.53184 * 108.77992 * 233.62613 * 15 14 12 17 17 C 1.53043 * 109.31464 * 305.37170 * 16 15 14 18 18 C 1.53038 * 109.53976 * 61.35540 * 17 16 15 19 19 O 1.42898 * 109.49587 * 58.59530 * 18 17 16 20 20 C 1.53000 * 109.49845 * 178.68670 * 18 17 16 21 21 C 1.53006 * 117.49773 * 13.62595 * 20 18 17 22 22 C 1.53001 * 59.99894 * 252.51046 * 21 20 18 23 23 C 1.46927 * 120.63021 * 174.61833 * 14 12 2 24 24 H 1.08997 * 109.46762 * 185.06879 * 1 2 3 25 25 H 1.09000 * 109.47254 * 305.06848 * 1 2 3 26 26 H 1.08999 * 109.46841 * 65.07203 * 1 2 3 27 27 H 0.96995 * 119.99990 * 179.97438 * 7 6 4 28 28 H 1.09008 * 109.58281 * 113.83863 * 15 14 12 29 29 H 1.08999 * 109.58840 * 353.42372 * 15 14 12 30 30 H 1.08995 * 109.49638 * 65.31700 * 16 15 14 31 31 H 1.08995 * 109.50339 * 185.41786 * 16 15 14 32 32 H 1.08992 * 109.46513 * 181.38457 * 17 16 15 33 33 H 1.09007 * 109.45680 * 301.35321 * 17 16 15 34 34 H 0.96707 * 113.99626 * 299.99898 * 19 18 17 35 35 H 1.08992 * 115.55204 * 159.33245 * 20 18 17 36 36 H 1.09003 * 117.49870 * 359.97438 * 21 20 18 37 37 H 1.08997 * 117.49686 * 145.02260 * 21 20 18 38 38 H 1.08998 * 117.49607 * 252.50815 * 22 21 20 39 39 H 1.09001 * 117.49874 * 107.48912 * 22 21 20 40 40 H 1.08998 * 109.58968 * 6.58752 * 23 14 12 41 41 H 1.09000 * 109.70558 * 246.22528 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1207 4.0081 10 1 1.8270 -0.4198 5.2204 11 1 1.8260 -2.5202 4.0077 12 6 2.0324 -0.7103 -1.2305 13 8 2.1531 -1.9171 -1.2272 14 7 2.3475 -0.0046 -2.3346 15 6 2.0961 1.4417 -2.3956 16 6 1.2677 1.7458 -3.6478 17 6 1.9820 1.1795 -4.8771 18 6 2.1106 -0.3393 -4.7400 19 8 0.8110 -0.9176 -4.6038 20 6 2.7955 -0.9082 -5.9843 21 6 3.4882 0.0809 -6.9239 22 6 2.1746 -0.5817 -7.3440 23 6 2.9486 -0.6670 -3.5002 24 1 -0.3633 -1.0236 0.0908 25 1 -0.3634 0.5904 0.8411 26 1 -0.3633 0.4331 -0.9319 27 1 0.7088 1.1613 3.4844 28 1 3.0450 1.9757 -2.4467 29 1 1.5457 1.7547 -1.5084 30 1 0.2844 1.2851 -3.5541 31 1 1.1557 2.8245 -3.7569 32 1 1.4069 1.4159 -5.7723 33 1 2.9750 1.6222 -4.9561 34 1 0.3190 -0.6023 -3.8332 35 1 3.2515 -1.8906 -5.8621 36 1 3.4557 1.1369 -6.6558 37 1 4.4003 -0.2508 -7.4200 38 1 2.2226 -1.3491 -8.1165 39 1 1.2782 0.0384 -7.3521 40 1 2.9606 -1.7453 -3.3418 41 1 3.9676 -0.3071 -3.6425 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598183445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:20 Heat of formation + Delta-G solvation = -83.492915 kcal Electronic energy + Delta-G solvation = -21709.794668 eV Core-core repulsion = 18589.470463 eV Total energy + Delta-G solvation = -3120.324204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.64469 -39.83115 -37.24485 -36.10503 -35.77320 -33.13739 -32.64639 -30.85705 -27.29407 -26.73140 -25.39365 -23.70658 -23.33573 -22.61833 -20.31931 -19.74630 -18.46218 -18.43472 -17.52901 -16.98002 -16.83122 -16.26402 -15.94897 -15.57136 -15.07666 -14.81312 -14.64172 -14.50827 -14.07670 -13.84653 -13.42321 -13.09022 -12.94085 -12.73202 -12.68061 -12.65018 -12.39820 -12.27708 -12.10084 -12.05062 -11.86626 -11.66612 -11.32703 -11.11962 -11.05192 -10.90278 -10.61199 -10.23389 -9.49815 -8.17691 -6.27928 1.39797 1.41618 1.49580 1.86639 2.10783 2.44366 2.72032 3.12082 3.38536 3.60548 3.73343 3.81395 4.00470 4.03862 4.06207 4.24347 4.28004 4.46870 4.54421 4.58253 4.70006 4.74866 4.80940 4.83868 4.90134 4.91223 5.01607 5.03549 5.07987 5.10966 5.28380 5.31247 5.34209 5.43505 5.63422 5.72259 5.89730 6.15804 6.53804 6.64188 6.75833 7.35505 7.46550 8.88075 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039000 B = 0.004854 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.767930 B = 5766.923883 C = 6013.317060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.037 0.963 6 C 0.026 3.974 7 N -0.906 5.906 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.281 1.281 12 C 0.522 3.478 13 O -0.592 6.592 14 N -0.618 5.618 15 C 0.096 3.904 16 C -0.132 4.132 17 C -0.138 4.138 18 C 0.155 3.845 19 O -0.569 6.569 20 C -0.168 4.168 21 C -0.154 4.154 22 C -0.164 4.164 23 C 0.087 3.913 24 H 0.015 0.985 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.267 0.733 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.374 0.626 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 6.612 -18.050 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.010 3.990 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.056 0.944 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.196 1.196 11 H -0.207 1.207 12 C 0.314 3.686 13 O -0.472 6.472 14 N -0.352 5.352 15 C -0.026 4.026 16 C -0.170 4.170 17 C -0.176 4.176 18 C 0.114 3.886 19 O -0.376 6.376 20 C -0.186 4.186 21 C -0.191 4.191 22 C -0.201 4.201 23 C -0.036 4.036 24 H 0.034 0.966 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.223 0.777 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.797 5.803 -18.443 19.535 hybrid contribution 0.093 -0.671 1.742 1.870 sum 2.890 5.132 -16.700 17.708 Atomic orbital electron populations 1.21497 0.95375 0.99540 1.00810 1.18832 0.94932 0.96233 0.89039 0.93302 1.21116 1.32216 1.12300 0.91360 0.94444 1.25527 0.95059 0.95673 1.01175 1.69924 1.36737 1.23269 1.24518 0.85688 0.78807 0.78614 0.79005 1.19881 1.19615 1.20654 1.21751 0.74900 0.87165 0.84830 1.90511 1.55606 1.17022 1.84060 1.48305 1.62832 1.09842 1.14253 1.22059 1.01314 0.78901 1.00284 1.21959 0.98474 1.03395 0.93141 1.22293 1.02895 0.93479 0.98907 1.20986 0.82383 0.93168 0.92096 1.86467 1.29177 1.70941 1.51059 1.22004 1.05456 1.00876 0.90295 1.23268 0.96573 0.98745 1.00470 1.22906 0.97514 1.03696 0.95982 1.22234 0.97566 0.98363 0.85430 0.96551 0.90720 0.93665 0.92407 0.89885 0.89552 0.92162 0.87219 0.89535 0.88687 0.77706 0.88562 0.86674 0.87165 0.88221 0.88576 0.92116 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.40 8.77 71.98 0.63 -4.77 16 2 C 0.03 1.54 1.83 -12.29 -0.02 1.52 16 3 H 0.05 2.42 6.19 -2.39 -0.01 2.41 16 4 C -0.53 -30.91 8.32 25.60 0.21 -30.69 16 5 H 0.04 2.33 7.25 -2.91 -0.02 2.31 16 6 C 0.03 1.43 5.30 84.65 0.45 1.87 16 7 N -0.91 -50.07 11.38 21.45 0.24 -49.83 16 8 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 12 C 0.52 24.66 6.68 87.66 0.59 25.25 16 13 O -0.59 -32.91 15.52 -3.06 -0.05 -32.96 16 14 N -0.62 -21.85 2.55 -818.91 -2.09 -23.93 16 15 C 0.10 2.59 6.15 86.36 0.53 3.12 16 16 C -0.13 -2.60 5.78 30.67 0.18 -2.43 16 17 C -0.14 -2.53 3.56 30.62 0.11 -2.42 16 18 C 0.15 3.87 0.93 -10.72 -0.01 3.86 16 19 O -0.57 -17.48 12.91 -148.98 -1.92 -19.41 16 20 C -0.17 -3.60 5.35 -10.79 -0.06 -3.66 16 21 C -0.15 -2.22 9.65 30.60 0.30 -1.93 16 22 C -0.16 -2.85 9.84 30.60 0.30 -2.55 16 23 C 0.09 2.73 5.39 86.36 0.47 3.19 16 24 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.07 3.78 6.22 -2.39 -0.01 3.76 16 26 H 0.04 1.76 8.12 -2.39 -0.02 1.74 16 27 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.09 2.64 5.51 -2.39 -0.01 2.62 16 30 H 0.06 1.31 6.70 -2.39 -0.02 1.29 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.39 6.88 -2.39 -0.02 1.37 16 33 H 0.09 1.41 6.84 -2.38 -0.02 1.40 16 34 H 0.37 11.48 6.86 -74.05 -0.51 10.97 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.12 1.36 5.91 -2.39 -0.01 1.34 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.10 1.68 7.28 -2.39 -0.02 1.66 16 40 H 0.06 2.34 7.00 -2.39 -0.02 2.33 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -69.20 316.83 2.41 -66.79 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.53 Total: 22.19 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 3.67 Total: -9.61 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -1.84 Total: -73.76 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.97 Total: -52.36 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.20 2.41 -66.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598183445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.699 kcal (2) G-P(sol) polarization free energy of solvation -69.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds