Wall clock time and date at job start Mon Mar 30 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47403 * 120.00902 * 2 1 3 5 5 H 1.07995 * 120.00481 * 119.99621 * 4 2 1 6 6 C 1.37875 * 119.99344 * 299.99413 * 4 2 1 7 7 N 1.31519 * 120.00098 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00294 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47188 * 90.00107 * 8 6 4 10 10 H 1.48496 * 109.47138 * 209.99993 * 8 6 4 11 11 H 1.48507 * 109.47134 * 329.99864 * 8 6 4 12 12 C 1.50703 * 109.46953 * 240.00208 * 2 1 3 13 13 O 1.21285 * 120.00269 * 240.00448 * 12 2 1 14 14 N 1.34784 * 119.99872 * 59.99832 * 12 2 1 15 15 C 1.46497 * 120.00066 * 180.02562 * 14 12 2 16 16 C 1.52996 * 109.47247 * 175.18907 * 15 14 12 17 17 O 1.42903 * 109.47062 * 299.61853 * 16 15 14 18 18 C 1.52998 * 109.47261 * 59.61959 * 16 15 14 19 19 C 1.53006 * 117.49870 * 253.98481 * 18 16 15 20 20 C 1.53000 * 117.50060 * 185.32370 * 18 16 15 21 21 C 1.53000 * 109.47216 * 179.62017 * 16 15 14 22 22 C 1.52999 * 117.49697 * 128.74932 * 21 16 15 23 23 C 1.53002 * 117.50126 * 60.08614 * 21 16 15 24 24 H 1.08992 * 109.47505 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47220 * 59.99138 * 1 2 3 26 26 H 1.09001 * 109.46787 * 299.99713 * 1 2 3 27 27 H 0.96998 * 119.99793 * 180.02562 * 7 6 4 28 28 H 0.96998 * 119.99579 * 0.02562 * 14 12 2 29 29 H 1.08999 * 109.47132 * 295.19208 * 15 14 12 30 30 H 1.08997 * 109.47307 * 55.18510 * 15 14 12 31 31 H 0.96696 * 114.00222 * 300.00129 * 17 16 15 32 32 H 1.09006 * 115.54668 * 39.64852 * 18 16 15 33 33 H 1.08992 * 117.49864 * 0.02562 * 19 18 16 34 34 H 1.09001 * 117.49741 * 145.01609 * 19 18 16 35 35 H 1.09000 * 117.49330 * 214.97907 * 20 18 16 36 36 H 1.08996 * 117.49840 * 359.97438 * 20 18 16 37 37 H 1.08996 * 115.54990 * 274.41454 * 21 16 15 38 38 H 1.08995 * 117.50362 * 359.97438 * 22 21 16 39 39 H 1.09002 * 117.49854 * 145.02573 * 22 21 16 40 40 H 1.08996 * 117.49880 * 214.98081 * 23 21 16 41 41 H 1.09001 * 117.49366 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 1 2.6533 -1.5887 1.1312 6 6 1.6994 -0.2396 2.4826 7 7 2.1382 -0.8593 3.5565 8 14 0.6250 1.2788 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9762 1.9948 3.9069 11 1 0.8472 2.1764 1.4921 12 6 2.0323 -0.7104 -1.2305 13 8 2.7295 -1.6966 -1.1194 14 7 1.7066 -0.2498 -2.4547 15 6 2.1944 -0.9407 -3.6509 16 6 1.5881 -0.2925 -4.8971 17 8 0.1639 -0.3969 -4.8432 18 6 1.9896 1.1828 -4.9513 19 6 0.9169 2.2199 -4.6125 20 6 1.3787 2.0410 -6.0609 21 6 2.1049 -1.0080 -6.1468 22 6 1.0689 -1.4885 -7.1650 23 6 1.8019 -2.5016 -6.2820 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 0.5138 0.8900 27 1 1.9036 -0.5281 4.4374 28 1 1.1493 0.5390 -2.5435 29 1 3.2810 -0.8671 -3.6952 30 1 1.9028 -1.9901 -3.6087 31 1 -0.1628 -1.3063 -4.8069 32 1 3.0144 1.4024 -4.6516 33 1 -0.0747 1.8511 -4.3506 34 1 1.2360 3.1219 -4.0903 35 1 2.0015 2.8253 -6.4910 36 1 0.6911 1.5544 -6.7526 37 1 3.0605 -0.6516 -6.5312 38 1 0.0191 -1.2954 -6.9444 39 1 1.3432 -1.4487 -8.2192 40 1 2.5581 -3.1277 -6.7556 41 1 1.2347 -2.9746 -5.4803 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598288113.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:04 Heat of formation + Delta-G solvation = -60.948251 kcal Electronic energy + Delta-G solvation = -21222.546729 eV Core-core repulsion = 18103.200135 eV Total energy + Delta-G solvation = -3119.346594 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.25228 -40.09655 -37.17012 -35.87536 -35.77225 -35.16589 -33.30697 -30.28475 -27.11338 -25.99145 -24.07177 -23.32326 -22.99702 -22.31813 -21.08899 -20.61979 -18.82336 -18.46244 -17.71188 -16.94155 -16.83131 -16.24934 -16.10480 -15.79437 -15.39830 -15.02989 -14.80480 -14.65408 -14.10092 -13.84892 -13.54764 -13.41222 -12.97692 -12.74863 -12.54459 -12.41972 -12.33421 -12.19207 -12.13224 -11.56610 -11.46848 -11.42151 -11.22205 -11.20356 -10.81255 -10.75870 -10.66678 -10.38153 -9.98323 -8.26718 -6.34458 1.33736 1.40187 1.51448 1.86845 2.30353 2.35131 2.80728 2.93745 3.06849 3.33917 3.48837 3.75939 3.86018 4.08119 4.11867 4.17274 4.26000 4.28422 4.42852 4.45853 4.55215 4.60623 4.66808 4.80421 4.84695 4.87254 4.91540 5.01944 5.05147 5.10669 5.23868 5.30446 5.37419 5.43665 5.44257 5.53006 5.56985 6.27260 6.66228 6.71943 6.86456 7.27034 7.51043 8.91043 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.004980 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.475801 B = 5620.995972 C = 6181.383282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.009 4.009 3 H 0.066 0.934 4 C -0.520 4.520 5 H 0.029 0.971 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.260 1.260 10 H -0.299 1.299 11 H -0.232 1.232 12 C 0.525 3.475 13 O -0.587 6.587 14 N -0.712 5.712 15 C 0.100 3.900 16 C 0.201 3.799 17 O -0.552 6.552 18 C -0.160 4.160 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.181 4.181 22 C -0.153 4.153 23 C -0.189 4.189 24 H 0.046 0.954 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.267 0.733 28 H 0.411 0.589 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.385 0.615 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 6.649 -24.725 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.031 4.031 3 H 0.084 0.916 4 C -0.559 4.559 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.784 3.216 9 H -0.186 1.186 10 H -0.227 1.227 11 H -0.155 1.155 12 C 0.313 3.687 13 O -0.467 6.467 14 N -0.366 5.366 15 C -0.024 4.024 16 C 0.160 3.840 17 O -0.359 6.359 18 C -0.178 4.178 19 C -0.211 4.211 20 C -0.187 4.187 21 C -0.200 4.200 22 C -0.189 4.189 23 C -0.225 4.225 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.249 0.751 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.235 0.765 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.412 6.576 -24.514 25.951 hybrid contribution -0.045 -0.356 0.892 0.962 sum -5.457 6.220 -23.622 25.029 Atomic orbital electron populations 1.21989 0.94478 1.01586 1.01371 1.19254 0.95408 0.97370 0.91031 0.91588 1.21091 1.31608 1.12812 0.90361 0.95260 1.26030 0.97455 1.00705 0.94791 1.70080 1.47662 1.42840 0.98714 0.85706 0.78817 0.79050 0.77996 1.18579 1.22662 1.15509 1.21064 0.78565 0.83651 0.85399 1.90564 1.39908 1.28763 1.87441 1.45793 1.54098 1.32491 1.04179 1.21975 0.99121 0.96512 0.84810 1.20014 0.80668 0.93323 0.90006 1.86491 1.19519 1.33430 1.96491 1.22168 0.98766 0.89614 1.07228 1.22974 0.99335 0.99568 0.99200 1.22869 1.02972 1.01478 0.91394 1.22809 1.01928 0.96866 0.98353 1.23007 0.98001 1.01432 0.96508 1.23087 1.04344 0.91723 1.03389 0.93497 0.89997 0.93573 0.92394 0.75135 0.92311 0.92267 0.76548 0.87035 0.88142 0.88438 0.87973 0.88465 0.86669 0.87618 0.87749 0.88056 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.57 71.98 0.62 -4.75 16 2 C -0.01 -0.42 2.23 -12.28 -0.03 -0.45 16 3 H 0.07 2.91 7.20 -2.39 -0.02 2.89 16 4 C -0.52 -31.69 8.96 25.60 0.23 -31.46 16 5 H 0.03 2.10 7.00 -2.91 -0.02 2.08 16 6 C 0.01 0.39 5.45 84.65 0.46 0.85 16 7 N -0.95 -61.87 13.96 21.45 0.30 -61.57 16 8 Si 0.96 43.70 24.37 68.60 1.67 45.37 16 9 H -0.26 -11.06 6.87 99.48 0.68 -10.38 16 10 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.23 -9.20 6.53 99.48 0.65 -8.55 16 12 C 0.52 23.50 7.15 87.66 0.63 24.12 16 13 O -0.59 -32.21 15.46 -3.05 -0.05 -32.26 16 14 N -0.71 -22.74 5.11 -463.06 -2.37 -25.11 16 15 C 0.10 2.71 4.62 86.38 0.40 3.11 16 16 C 0.20 3.80 0.68 -10.80 -0.01 3.79 16 17 O -0.55 -9.85 9.90 -148.98 -1.47 -11.33 16 18 C -0.16 -2.92 4.41 -10.79 -0.05 -2.97 16 19 C -0.17 -3.06 9.13 30.62 0.28 -2.78 16 20 C -0.15 -2.29 9.89 30.62 0.30 -1.99 16 21 C -0.18 -2.85 4.94 -10.79 -0.05 -2.90 16 22 C -0.15 -1.93 9.77 30.62 0.30 -1.64 16 23 C -0.19 -2.80 9.42 30.62 0.29 -2.51 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.08 2.42 7.56 -2.39 -0.02 2.40 16 26 H 0.05 1.83 3.27 -2.39 -0.01 1.83 16 27 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 28 H 0.41 11.17 6.64 -92.71 -0.62 10.55 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.72 7.30 -2.39 -0.02 1.70 16 31 H 0.38 5.52 7.81 -74.06 -0.58 4.94 16 32 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.10 1.92 7.14 -2.39 -0.02 1.90 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.12 1.77 8.11 -2.39 -0.02 1.75 16 38 H 0.11 1.30 6.85 -2.39 -0.02 1.29 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.43 7.28 -2.39 -0.02 1.42 16 Total: -1.00 -77.04 324.13 1.22 -75.82 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: -0.23 Total: 28.65 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.37 Total: -19.58 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -2.07 Total: -86.68 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.52 Total: -43.59 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.67 Total: 45.37 kcal Total: -77.04 1.22 -75.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598288113.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.869 kcal (2) G-P(sol) polarization free energy of solvation -77.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds