Wall clock time and date at job start Mon Mar 30 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.48117 * 127.83817 * 359.68122 * 14 12 2 16 16 C 1.54741 * 104.49042 * 140.20867 * 15 14 12 17 17 H 1.09001 * 112.02709 * 262.68773 * 16 15 14 18 18 C 1.54158 * 108.70592 * 137.66958 * 16 15 14 19 19 C 1.54844 * 104.32536 * 271.36867 * 18 16 15 20 20 C 1.54842 * 102.73370 * 321.80942 * 19 18 16 21 21 C 1.54160 * 104.33120 * 38.18448 * 20 19 18 22 22 C 1.52999 * 112.55268 * 213.36408 * 21 20 19 23 23 O 1.42898 * 109.47219 * 298.08284 * 22 21 20 24 24 C 1.48115 * 127.84355 * 180.02562 * 14 12 2 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08997 * 110.39602 * 259.05196 * 15 14 12 30 30 H 1.08994 * 110.39762 * 21.45166 * 15 14 12 31 31 H 1.08995 * 110.46637 * 30.08300 * 18 16 15 32 32 H 1.09008 * 110.45788 * 152.66403 * 18 16 15 33 33 H 1.08997 * 110.75674 * 80.11884 * 19 18 16 34 34 H 1.08997 * 110.76315 * 203.31154 * 19 18 16 35 35 H 1.09002 * 110.46027 * 279.46972 * 20 19 18 36 36 H 1.08999 * 110.46250 * 156.90099 * 20 19 18 37 37 H 1.09004 * 109.47023 * 58.08044 * 22 21 20 38 38 H 1.09000 * 109.47189 * 178.07942 * 22 21 20 39 39 H 0.96703 * 113.99796 * 180.02562 * 23 22 21 40 40 H 1.08998 * 110.39484 * 338.54382 * 24 14 12 41 41 H 1.09000 * 110.39436 * 100.93187 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 0.8685 0.9243 -2.7904 16 6 1.5833 1.5780 -3.9971 17 1 2.2224 2.4072 -3.6935 18 6 0.5213 1.9982 -5.0325 19 6 0.3443 0.7480 -5.9287 20 6 1.7893 0.2040 -6.0450 21 6 2.3955 0.4291 -4.6455 22 6 3.8914 0.7459 -4.6981 23 8 4.5930 -0.3609 -5.2679 24 6 2.1002 -0.8070 -3.7694 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 -0.1366 0.6066 -3.0678 30 1 0.8304 1.6167 -1.9495 31 1 -0.4167 2.2475 -4.5366 32 1 0.8777 2.8427 -5.6226 33 1 -0.3062 0.0172 -5.4482 34 1 -0.0466 1.0264 -6.9074 35 1 2.3474 0.7625 -6.7964 36 1 1.7781 -0.8583 -6.2890 37 1 4.0536 1.6330 -5.3103 38 1 4.2597 0.9288 -3.6886 39 1 5.5490 -0.2297 -5.3320 40 1 2.9934 -1.4235 -3.6688 41 1 1.2826 -1.3883 -4.1956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600509710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:13 Heat of formation + Delta-G solvation = -93.686076 kcal Electronic energy + Delta-G solvation = -21658.962543 eV Core-core repulsion = 18538.196330 eV Total energy + Delta-G solvation = -3120.766213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.49015 -38.01748 -36.36613 -34.16023 -33.71180 -31.11584 -30.20698 -29.30559 -25.87828 -25.56106 -25.02163 -23.40703 -21.69009 -20.43754 -18.67577 -18.55943 -17.13665 -16.42585 -15.95892 -15.57819 -15.10515 -15.00811 -14.47855 -14.28964 -14.12451 -13.23629 -13.17912 -12.69135 -12.45729 -12.30529 -12.27391 -11.66314 -11.48471 -11.12190 -11.05922 -10.94309 -10.77932 -10.70502 -10.69788 -10.63919 -10.48979 -10.37057 -10.21096 -9.94267 -9.88268 -8.94546 -8.55969 -8.27688 -8.04986 -6.00555 -4.03374 3.38176 3.40110 3.45712 3.71365 3.75226 4.07322 4.43302 4.48190 4.51617 4.80395 5.07741 5.17398 5.25329 5.30303 5.32459 5.41569 5.46613 5.50460 5.56250 5.69548 5.82399 5.93624 5.96171 5.99972 6.04580 6.13132 6.19996 6.25525 6.34502 6.39043 6.66555 6.83720 6.92177 7.02706 7.52270 7.60389 7.79131 8.04551 8.21593 8.49177 9.05158 9.28900 9.61857 11.07092 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.005267 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.578525 B = 5315.039443 C = 5853.334692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.036 3.964 3 H 0.050 0.950 4 C -0.501 4.501 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.539 3.461 13 O -0.545 6.545 14 N -0.634 5.634 15 C 0.111 3.889 16 C -0.100 4.100 17 H 0.087 0.913 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.102 4.102 21 C -0.072 4.072 22 C 0.097 3.903 23 O -0.569 6.569 24 C 0.117 3.883 25 H 0.092 0.908 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.377 0.623 40 H 0.083 0.917 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 5.098 -17.468 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.015 3.985 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.332 3.668 13 O -0.421 6.421 14 N -0.371 5.371 15 C -0.013 4.013 16 C -0.119 4.119 17 H 0.105 0.895 18 C -0.153 4.153 19 C -0.164 4.164 20 C -0.140 4.140 21 C -0.073 4.073 22 C 0.019 3.981 23 O -0.374 6.374 24 C -0.007 4.007 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.223 0.777 40 H 0.101 0.899 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.438 4.358 -17.125 17.676 hybrid contribution 0.824 -0.079 0.843 1.182 sum 0.386 4.279 -16.282 16.839 Atomic orbital electron populations 1.21851 0.96567 0.99856 1.01163 1.18807 0.94181 0.96606 0.88922 0.93221 1.21123 1.30954 1.12807 0.89033 0.90904 1.24939 0.95122 0.95082 0.99050 1.69862 1.37156 1.23096 1.23577 0.86508 0.79271 0.79750 0.81613 1.20208 1.21370 1.20195 1.21787 0.78166 0.83989 0.82862 1.90539 1.38541 1.27156 1.85826 1.49331 1.52494 1.30189 1.05069 1.22556 0.93726 0.88269 0.96748 1.22826 0.96473 0.97064 0.95552 0.89510 1.22349 0.98527 0.97725 0.96676 1.22523 0.96948 0.97472 0.99499 1.22259 0.95144 1.01370 0.95179 1.22062 0.93180 0.96163 0.95876 1.22045 0.91209 0.87948 0.96918 1.86469 1.23507 1.42233 1.85194 1.22223 1.00563 0.94758 0.83132 0.88928 0.95188 0.96305 0.92949 0.91503 0.89519 0.90983 0.91533 0.91337 0.91549 0.91630 0.91261 0.93724 0.93281 0.77669 0.89887 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.72 37.16 0.32 -2.90 16 2 C 0.04 0.92 1.97 -92.92 -0.18 0.74 16 3 H 0.05 1.32 7.96 -51.93 -0.41 0.90 16 4 C -0.50 -14.58 8.37 -34.44 -0.29 -14.87 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.43 11.32 55.43 0.63 -24.81 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.54 13.13 7.26 -10.98 -0.08 13.05 16 13 O -0.54 -15.18 15.72 5.56 0.09 -15.09 16 14 N -0.63 -12.13 3.30 -169.16 -0.56 -12.68 16 15 C 0.11 1.67 4.65 -2.24 -0.01 1.66 16 16 C -0.10 -1.20 3.61 -88.08 -0.32 -1.52 16 17 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 18 C -0.11 -1.09 6.10 -25.15 -0.15 -1.24 16 19 C -0.13 -1.20 6.82 -24.79 -0.17 -1.37 16 20 C -0.10 -1.09 5.49 -25.15 -0.14 -1.23 16 21 C -0.07 -0.92 0.76 -152.17 -0.12 -1.03 16 22 C 0.10 1.18 5.96 37.16 0.22 1.40 16 23 O -0.57 -6.98 12.82 -35.23 -0.45 -7.43 16 24 C 0.12 1.93 5.95 -2.44 -0.01 1.91 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.36 5.33 -51.93 -0.28 0.09 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.07 0.93 7.51 -51.93 -0.39 0.54 16 30 H 0.09 1.38 6.53 -51.93 -0.34 1.04 16 31 H 0.07 0.65 7.74 -51.93 -0.40 0.24 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 7.99 -51.93 -0.41 0.23 16 36 H 0.07 0.78 7.74 -51.93 -0.40 0.38 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.38 2.95 9.12 45.56 0.42 3.37 16 40 H 0.08 1.58 7.17 -51.93 -0.37 1.21 16 41 H 0.06 0.95 7.61 -51.93 -0.40 0.55 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -33.00 317.55 -7.29 -40.29 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.74 Total: 1.62 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.02 Total: -3.84 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.07 Total: -37.49 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.36 Total: -22.52 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.00 -7.29 -40.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600509710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.395 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds