Wall clock time and date at job start Mon Mar 30 2020 05:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 13 13 O 1.21282 * 119.99865 * 240.00203 * 12 2 1 14 14 N 1.34774 * 120.00164 * 59.99708 * 12 2 1 15 15 C 1.48117 * 127.83817 * 359.68122 * 14 12 2 16 16 C 1.54741 * 104.49042 * 140.20867 * 15 14 12 17 17 H 1.09001 * 112.02709 * 262.68773 * 16 15 14 18 18 C 1.54158 * 108.70592 * 137.66958 * 16 15 14 19 19 C 1.54844 * 104.32536 * 271.36867 * 18 16 15 20 20 C 1.54842 * 102.73370 * 321.80942 * 19 18 16 21 21 C 1.54160 * 104.33120 * 38.18448 * 20 19 18 22 22 C 1.52999 * 112.55268 * 213.36408 * 21 20 19 23 23 O 1.42898 * 109.47219 * 298.08284 * 22 21 20 24 24 C 1.48115 * 127.84355 * 180.02562 * 14 12 2 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08997 * 110.39602 * 259.05196 * 15 14 12 30 30 H 1.08994 * 110.39762 * 21.45166 * 15 14 12 31 31 H 1.08995 * 110.46637 * 30.08300 * 18 16 15 32 32 H 1.09008 * 110.45788 * 152.66403 * 18 16 15 33 33 H 1.08997 * 110.75674 * 80.11884 * 19 18 16 34 34 H 1.08997 * 110.76315 * 203.31154 * 19 18 16 35 35 H 1.09002 * 110.46027 * 279.46972 * 20 19 18 36 36 H 1.08999 * 110.46250 * 156.90099 * 20 19 18 37 37 H 1.09004 * 109.47023 * 58.08044 * 22 21 20 38 38 H 1.09000 * 109.47189 * 178.07942 * 22 21 20 39 39 H 0.96703 * 113.99796 * 180.02562 * 23 22 21 40 40 H 1.08998 * 110.39484 * 338.54382 * 24 14 12 41 41 H 1.09000 * 110.39436 * 100.93187 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8261 -0.4208 5.2204 11 1 1.8261 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 0.8685 0.9243 -2.7904 16 6 1.5833 1.5780 -3.9971 17 1 2.2224 2.4072 -3.6935 18 6 0.5213 1.9982 -5.0325 19 6 0.3443 0.7480 -5.9287 20 6 1.7893 0.2040 -6.0450 21 6 2.3955 0.4291 -4.6455 22 6 3.8914 0.7459 -4.6981 23 8 4.5930 -0.3609 -5.2679 24 6 2.1002 -0.8070 -3.7694 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 -0.1366 0.6066 -3.0678 30 1 0.8304 1.6167 -1.9495 31 1 -0.4167 2.2475 -4.5366 32 1 0.8777 2.8427 -5.6226 33 1 -0.3062 0.0172 -5.4482 34 1 -0.0466 1.0264 -6.9074 35 1 2.3474 0.7625 -6.7964 36 1 1.7781 -0.8583 -6.2890 37 1 4.0536 1.6330 -5.3103 38 1 4.2597 0.9288 -3.6886 39 1 5.5490 -0.2297 -5.3320 40 1 2.9934 -1.4235 -3.6688 41 1 1.2826 -1.3883 -4.1956 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600509710.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:13 Heat of formation + Delta-G solvation = -117.241993 kcal Electronic energy + Delta-G solvation = -21659.984004 eV Core-core repulsion = 18538.196330 eV Total energy + Delta-G solvation = -3121.787674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71422 -39.72419 -37.35065 -35.86696 -35.47987 -32.74705 -31.63172 -30.42881 -27.41133 -27.15531 -26.45935 -24.69879 -23.37271 -21.30704 -20.25674 -19.71361 -18.39910 -18.15138 -17.50038 -17.09452 -16.81675 -16.17612 -16.04780 -15.53275 -15.34672 -14.79543 -14.62103 -14.36314 -13.75903 -13.61088 -13.40659 -13.19273 -13.08618 -12.95493 -12.72979 -12.53522 -12.25231 -12.04701 -11.94887 -11.82227 -11.71570 -11.59125 -11.50543 -11.44628 -11.06950 -10.87420 -10.62418 -10.31284 -9.63279 -8.17688 -6.28525 1.38808 1.40836 1.49462 1.85767 2.14022 2.44568 3.10821 3.14378 3.43108 3.50858 3.91968 4.13554 4.16279 4.20580 4.24708 4.41364 4.45788 4.48267 4.56157 4.67779 4.70429 4.73575 4.74907 4.93075 4.94561 4.96012 5.04275 5.11622 5.17094 5.27820 5.31134 5.32215 5.45037 5.51847 5.54239 5.70043 5.93078 6.19057 6.66908 6.81080 6.86821 7.36344 7.45574 8.88169 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029356 B = 0.005267 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.578525 B = 5315.039443 C = 5853.334692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.035 3.965 3 H 0.038 0.962 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.277 1.277 12 C 0.535 3.465 13 O -0.595 6.595 14 N -0.631 5.631 15 C 0.101 3.899 16 C -0.092 4.092 17 H 0.094 0.906 18 C -0.107 4.107 19 C -0.124 4.124 20 C -0.096 4.096 21 C -0.069 4.069 22 C 0.097 3.903 23 O -0.586 6.586 24 C 0.114 3.886 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.266 0.734 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.395 0.605 40 H 0.050 0.950 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 6.709 -19.256 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.014 3.986 3 H 0.056 0.944 4 C -0.573 4.573 5 H 0.063 0.937 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.195 1.195 11 H -0.203 1.203 12 C 0.327 3.673 13 O -0.475 6.475 14 N -0.365 5.365 15 C -0.021 4.021 16 C -0.112 4.112 17 H 0.112 0.888 18 C -0.145 4.145 19 C -0.161 4.161 20 C -0.134 4.134 21 C -0.070 4.070 22 C 0.019 3.981 23 O -0.394 6.394 24 C -0.008 4.008 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.244 0.756 40 H 0.069 0.931 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.377 6.019 -18.963 19.943 hybrid contribution 1.128 -0.568 1.342 1.843 sum -0.249 5.451 -17.621 18.446 Atomic orbital electron populations 1.21659 0.94947 0.99232 1.02043 1.18697 0.95410 0.95518 0.88964 0.94430 1.21243 1.31932 1.12836 0.91249 0.93734 1.25588 0.95082 0.95747 1.01318 1.69930 1.36953 1.23393 1.24488 0.85640 0.78655 0.78724 0.78779 1.20218 1.19481 1.20264 1.21438 0.78050 0.83486 0.84293 1.90498 1.40887 1.29262 1.86882 1.49209 1.51791 1.30952 1.04518 1.22905 0.94423 0.86744 0.98013 1.22833 0.97044 0.96572 0.94718 0.88776 1.22355 0.97859 0.98360 0.95880 1.22532 0.95758 0.97134 1.00678 1.22238 0.96154 1.01301 0.93703 1.22119 0.94097 0.94289 0.96515 1.22055 0.90727 0.89067 0.96249 1.86427 1.25240 1.42742 1.84986 1.22413 0.99490 0.96546 0.82394 0.90825 0.96390 0.92500 0.92429 0.89629 0.90400 0.90061 0.89287 0.92181 0.89261 0.89956 0.92127 0.90497 0.95858 0.75611 0.93115 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.72 71.98 0.63 -5.13 16 2 C 0.04 1.87 1.97 -12.29 -0.02 1.84 16 3 H 0.04 2.07 7.96 -2.39 -0.02 2.05 16 4 C -0.53 -32.31 8.37 25.60 0.21 -32.10 16 5 H 0.04 2.90 6.75 -2.91 -0.02 2.88 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -51.69 11.32 21.45 0.24 -51.44 16 8 Si 0.96 45.93 29.54 68.60 2.03 47.95 16 9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.54 27.10 7.26 87.66 0.64 27.74 16 13 O -0.59 -35.05 15.72 -3.04 -0.05 -35.10 16 14 N -0.63 -24.38 3.30 -807.48 -2.66 -27.04 16 15 C 0.10 2.90 4.65 86.66 0.40 3.30 16 16 C -0.09 -1.97 3.61 -9.15 -0.03 -2.00 16 17 H 0.09 1.91 7.88 -2.39 -0.02 1.89 16 18 C -0.11 -1.55 6.10 31.62 0.19 -1.36 16 19 C -0.12 -1.84 6.82 31.85 0.22 -1.62 16 20 C -0.10 -1.76 5.49 31.62 0.17 -1.58 16 21 C -0.07 -1.64 0.76 -50.67 -0.04 -1.68 16 22 C 0.10 2.22 5.96 71.98 0.43 2.65 16 23 O -0.59 -13.86 12.82 -148.98 -1.91 -15.77 16 24 C 0.11 3.78 5.95 86.53 0.51 4.30 16 25 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 26 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 2.20 5.33 -2.38 -0.01 2.19 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.09 2.16 7.51 -2.39 -0.02 2.14 16 30 H 0.08 2.39 6.53 -2.39 -0.02 2.37 16 31 H 0.08 1.09 7.74 -2.39 -0.02 1.07 16 32 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.28 7.99 -2.39 -0.02 1.26 16 36 H 0.06 1.23 7.74 -2.39 -0.02 1.21 16 37 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.39 5.82 9.12 -74.06 -0.68 5.15 16 40 H 0.05 2.01 7.17 -2.39 -0.02 1.99 16 41 H 0.07 2.18 7.61 -2.39 -0.02 2.17 16 Total: -1.00 -74.28 317.55 1.76 -72.53 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.35 Total: 12.81 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 3.76 Total: -3.93 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.42 Total: -78.49 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -1.96 Total: -50.87 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -74.28 1.76 -72.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600509710.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.716 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds