Wall clock time and date at job start Mon Mar 30 2020 05:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47227 * 2 1 4 4 C 1.37097 * 119.99550 * 95.42525 * 3 2 1 5 5 H 1.08005 * 119.99391 * 213.88059 * 4 3 2 6 6 C 1.38946 * 120.00402 * 33.88065 * 4 3 2 7 7 N 1.31413 * 119.99950 * 22.30472 * 6 4 3 8 8 Si 1.86808 * 119.99882 * 202.30198 * 6 4 3 9 9 H 1.48498 * 109.47160 * 270.00078 * 8 6 4 10 10 H 1.48495 * 109.46873 * 30.00191 * 8 6 4 11 11 H 1.48500 * 109.46630 * 150.00417 * 8 6 4 12 12 C 1.34768 * 119.99817 * 275.42829 * 3 2 1 13 13 O 1.21297 * 119.99804 * 180.02562 * 12 3 2 14 14 C 1.50696 * 120.00515 * 359.97438 * 12 3 2 15 15 H 1.09000 * 115.55088 * 34.41763 * 14 12 3 16 16 C 1.53001 * 117.50240 * 248.75221 * 14 12 3 17 17 C 1.53002 * 117.50293 * 180.08897 * 14 12 3 18 18 H 1.09002 * 117.49455 * 0.02562 * 17 14 12 19 19 C 1.52998 * 117.49802 * 215.00027 * 17 14 12 20 20 C 1.53180 * 109.54064 * 179.55476 * 19 17 14 21 21 C 1.53093 * 109.16139 * 183.15655 * 20 19 17 22 22 O 1.42900 * 109.41772 * 57.60808 * 21 20 19 23 23 C 1.42904 * 114.09978 * 298.84616 * 22 21 20 24 24 C 1.53089 * 109.41592 * 61.15016 * 23 22 21 25 25 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46897 * 299.99989 * 1 2 3 27 27 H 1.08995 * 109.47292 * 59.99688 * 1 2 3 28 28 H 1.08998 * 109.47203 * 240.00285 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99767 * 2 1 3 30 30 H 0.97003 * 120.00077 * 179.97438 * 7 6 4 31 31 H 1.09004 * 117.49259 * 359.97438 * 16 14 12 32 32 H 1.09002 * 117.50250 * 145.01480 * 16 14 12 33 33 H 1.08997 * 109.54700 * 299.82405 * 19 17 14 34 34 H 1.08998 * 109.52411 * 303.06344 * 20 19 17 35 35 H 1.08997 * 109.52399 * 63.24977 * 20 19 17 36 36 H 1.08999 * 109.48078 * 297.62434 * 21 20 19 37 37 H 1.09007 * 109.47742 * 177.59300 * 21 20 19 38 38 H 1.09004 * 109.47481 * 301.17376 * 23 22 21 39 39 H 1.08999 * 109.47956 * 181.14372 * 23 22 21 40 40 H 1.08995 * 109.51927 * 182.48567 * 24 23 22 41 41 H 1.09005 * 109.57216 * 62.33320 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3527 1.9900 1.1820 5 1 2.1845 3.0492 1.3104 6 6 2.9078 1.2445 2.2148 7 7 3.5121 0.1073 1.9531 8 14 2.7952 1.8589 3.9754 9 1 3.9780 2.7029 4.2818 10 1 1.5575 2.6625 4.1409 11 1 2.7607 0.6997 4.9028 12 6 2.1389 2.0533 -1.1619 13 8 2.5437 3.1968 -1.1620 14 6 1.7719 1.3840 -2.4612 15 1 0.9378 0.6842 -2.4104 16 6 2.9071 1.0602 -3.4346 17 6 1.9328 2.1990 -3.7460 18 1 2.3045 3.2193 -3.6515 19 6 0.9106 1.9694 -4.8610 20 6 1.2349 2.8803 -6.0491 21 6 0.1626 2.7012 -7.1270 22 8 -1.1214 2.9959 -6.5734 23 6 -1.4986 2.1447 -5.4892 24 6 -0.4931 2.3014 -4.3455 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9000 -0.4130 2.6741 31 1 3.9195 1.3318 -3.1352 32 1 2.8197 0.1477 -4.0242 33 1 0.9453 0.9273 -5.1786 34 1 1.2493 3.9188 -5.7186 35 1 2.2098 2.6135 -6.4571 36 1 0.1763 1.6721 -7.4858 37 1 0.3649 3.3784 -7.9569 38 1 -1.5067 1.1083 -5.8266 39 1 -2.4933 2.4210 -5.1393 40 1 -0.7541 1.6207 -3.5353 41 1 -0.5134 3.3280 -3.9795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601015717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:22 Heat of formation + Delta-G solvation = -67.340512 kcal Electronic energy + Delta-G solvation = -21131.392761 eV Core-core repulsion = 18011.768977 eV Total energy + Delta-G solvation = -3119.623783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74633 -38.64870 -36.44507 -34.82135 -32.76109 -31.90453 -31.11820 -29.43984 -26.06992 -25.05621 -23.68686 -22.91953 -21.87041 -20.94859 -19.88323 -18.43665 -16.92532 -16.45769 -16.02311 -15.72864 -15.08046 -14.78778 -14.59794 -14.18393 -13.92798 -13.71236 -13.17036 -13.10573 -12.78335 -12.40638 -12.00897 -11.84578 -11.69152 -11.47001 -11.34684 -11.10858 -11.00545 -10.91447 -10.71966 -10.43462 -10.34354 -10.32441 -10.05696 -9.87628 -9.55586 -9.42284 -8.90853 -8.36772 -7.46496 -6.32058 -3.92065 3.16608 3.26076 3.31858 3.65524 3.82474 4.11472 4.36629 4.55879 4.83089 4.91223 4.98930 5.00478 5.06728 5.18539 5.32780 5.39840 5.43411 5.57539 5.58812 5.65118 5.70103 5.83090 5.89411 5.94108 5.98052 6.07141 6.10770 6.19008 6.24786 6.36817 6.39466 6.47469 6.58400 6.71768 6.90565 7.13259 7.29457 7.60711 8.27224 8.54439 9.21561 9.45453 10.06883 10.71755 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.004421 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.763985 B = 6331.970366 C = 6491.173535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.097 3.903 3 N -0.437 5.437 4 C -0.307 4.307 5 H 0.091 0.909 6 C 0.035 3.965 7 N -0.869 5.869 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.283 1.283 12 C 0.485 3.515 13 O -0.585 6.585 14 C -0.165 4.165 15 H 0.109 0.891 16 C -0.154 4.154 17 C -0.125 4.125 18 H 0.114 0.886 19 C -0.055 4.055 20 C -0.148 4.148 21 C 0.061 3.939 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.150 4.150 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 -2.438 -13.065 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.155 5.155 4 C -0.435 4.435 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.508 5.508 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.194 1.194 11 H -0.208 1.208 12 C 0.273 3.727 13 O -0.469 6.469 14 C -0.186 4.186 15 H 0.127 0.873 16 C -0.192 4.192 17 C -0.144 4.144 18 H 0.132 0.868 19 C -0.073 4.073 20 C -0.186 4.186 21 C -0.016 4.016 22 O -0.305 6.305 23 C -0.015 4.015 24 C -0.188 4.188 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.130 0.870 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.783 -1.888 -12.981 14.768 hybrid contribution 0.217 -0.271 1.125 1.178 sum -6.567 -2.159 -11.856 13.724 Atomic orbital electron populations 1.22231 0.98390 1.00219 1.01449 1.21567 0.91536 0.85536 1.04067 1.43426 1.55504 1.11786 1.04748 1.19450 1.39572 0.95474 0.88976 0.89126 1.25315 0.94550 0.96494 1.00482 1.69932 1.32615 1.15329 1.32907 0.86106 0.79062 0.78350 0.82232 1.20308 1.19411 1.20803 1.19424 0.82100 0.87331 0.83880 1.90501 1.50864 1.18836 1.86691 1.22339 1.01660 1.03572 0.91019 0.87265 1.22968 0.95577 0.98980 1.01641 1.22298 0.99725 0.97729 0.94616 0.86846 1.20751 0.93743 0.99035 0.93798 1.22218 0.99127 1.01160 0.96065 1.22580 0.83102 1.00354 0.95520 1.87908 1.34724 1.58199 1.49697 1.22607 0.98259 0.93777 0.86880 1.22221 0.94624 1.03606 0.98306 0.93175 0.92472 0.93966 0.93347 0.86990 0.92280 0.88633 0.88923 0.91288 0.90761 0.90744 0.93442 0.89108 0.93438 0.89023 0.90692 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.02 37.16 0.37 -2.61 16 2 C 0.10 2.13 5.31 -4.04 -0.02 2.11 16 3 N -0.44 -11.22 2.56 -114.81 -0.29 -11.52 16 4 C -0.31 -8.63 8.98 -14.93 -0.13 -8.76 16 5 H 0.09 2.68 7.70 -52.48 -0.40 2.27 16 6 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 7 N -0.87 -23.50 11.34 55.50 0.63 -22.87 16 8 Si 0.92 20.68 29.61 -169.99 -5.03 15.64 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 12 C 0.48 12.08 7.37 -10.99 -0.08 12.00 16 13 O -0.58 -16.71 16.08 5.54 0.09 -16.62 16 14 C -0.16 -3.10 4.01 -91.77 -0.37 -3.47 16 15 H 0.11 1.86 5.51 -51.93 -0.29 1.58 16 16 C -0.15 -2.53 9.89 -26.69 -0.26 -2.79 16 17 C -0.13 -2.03 4.68 -90.58 -0.42 -2.45 16 18 H 0.11 2.11 7.64 -51.93 -0.40 1.71 16 19 C -0.05 -0.70 2.43 -90.44 -0.22 -0.92 16 20 C -0.15 -1.67 5.40 -26.59 -0.14 -1.81 16 21 C 0.06 0.63 6.84 37.21 0.25 0.88 16 22 O -0.39 -4.81 10.77 -35.23 -0.38 -5.19 16 23 C 0.06 0.68 6.84 37.20 0.25 0.93 16 24 C -0.15 -1.90 5.21 -26.59 -0.14 -2.04 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.71 6.84 -51.93 -0.36 0.36 16 28 H 0.05 0.98 6.96 -51.93 -0.36 0.62 16 29 H 0.11 2.72 5.35 -51.93 -0.28 2.44 16 30 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 31 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 33 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.95 7.42 -51.93 -0.39 0.57 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -31.41 326.67 -7.72 -39.13 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.66 Total: 4.59 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.00 Total: -8.08 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.34 Total: -34.39 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.29 Total: -21.81 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.41 -7.72 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.213 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds