Wall clock time and date at job start Mon Mar 30 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47227 * 2 1 4 4 C 1.37097 * 119.99550 * 95.42525 * 3 2 1 5 5 H 1.08005 * 119.99391 * 213.88059 * 4 3 2 6 6 C 1.38946 * 120.00402 * 33.88065 * 4 3 2 7 7 N 1.31413 * 119.99950 * 22.30472 * 6 4 3 8 8 Si 1.86808 * 119.99882 * 202.30198 * 6 4 3 9 9 H 1.48498 * 109.47160 * 270.00078 * 8 6 4 10 10 H 1.48495 * 109.46873 * 30.00191 * 8 6 4 11 11 H 1.48500 * 109.46630 * 150.00417 * 8 6 4 12 12 C 1.34768 * 119.99817 * 275.42829 * 3 2 1 13 13 O 1.21297 * 119.99804 * 180.02562 * 12 3 2 14 14 C 1.50696 * 120.00515 * 359.97438 * 12 3 2 15 15 H 1.09000 * 115.55088 * 34.41763 * 14 12 3 16 16 C 1.53001 * 117.50240 * 248.75221 * 14 12 3 17 17 C 1.53002 * 117.50293 * 180.08897 * 14 12 3 18 18 H 1.09002 * 117.49455 * 0.02562 * 17 14 12 19 19 C 1.52998 * 117.49802 * 215.00027 * 17 14 12 20 20 C 1.53180 * 109.54064 * 179.55476 * 19 17 14 21 21 C 1.53093 * 109.16139 * 183.15655 * 20 19 17 22 22 O 1.42900 * 109.41772 * 57.60808 * 21 20 19 23 23 C 1.42904 * 114.09978 * 298.84616 * 22 21 20 24 24 C 1.53089 * 109.41592 * 61.15016 * 23 22 21 25 25 H 1.09003 * 109.46889 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46897 * 299.99989 * 1 2 3 27 27 H 1.08995 * 109.47292 * 59.99688 * 1 2 3 28 28 H 1.08998 * 109.47203 * 240.00285 * 2 1 3 29 29 H 1.09005 * 109.47270 * 119.99767 * 2 1 3 30 30 H 0.97003 * 120.00077 * 179.97438 * 7 6 4 31 31 H 1.09004 * 117.49259 * 359.97438 * 16 14 12 32 32 H 1.09002 * 117.50250 * 145.01480 * 16 14 12 33 33 H 1.08997 * 109.54700 * 299.82405 * 19 17 14 34 34 H 1.08998 * 109.52411 * 303.06344 * 20 19 17 35 35 H 1.08997 * 109.52399 * 63.24977 * 20 19 17 36 36 H 1.08999 * 109.48078 * 297.62434 * 21 20 19 37 37 H 1.09007 * 109.47742 * 177.59300 * 21 20 19 38 38 H 1.09004 * 109.47481 * 301.17376 * 23 22 21 39 39 H 1.08999 * 109.47956 * 181.14372 * 23 22 21 40 40 H 1.08995 * 109.51927 * 182.48567 * 24 23 22 41 41 H 1.09005 * 109.57216 * 62.33320 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3527 1.9900 1.1820 5 1 2.1845 3.0492 1.3104 6 6 2.9078 1.2445 2.2148 7 7 3.5121 0.1073 1.9531 8 14 2.7952 1.8589 3.9754 9 1 3.9780 2.7029 4.2818 10 1 1.5575 2.6625 4.1409 11 1 2.7607 0.6997 4.9028 12 6 2.1389 2.0533 -1.1619 13 8 2.5437 3.1968 -1.1620 14 6 1.7719 1.3840 -2.4612 15 1 0.9378 0.6842 -2.4104 16 6 2.9071 1.0602 -3.4346 17 6 1.9328 2.1990 -3.7460 18 1 2.3045 3.2193 -3.6515 19 6 0.9106 1.9694 -4.8610 20 6 1.2349 2.8803 -6.0491 21 6 0.1626 2.7012 -7.1270 22 8 -1.1214 2.9959 -6.5734 23 6 -1.4986 2.1447 -5.4892 24 6 -0.4931 2.3014 -4.3455 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9000 -0.4130 2.6741 31 1 3.9195 1.3318 -3.1352 32 1 2.8197 0.1477 -4.0242 33 1 0.9453 0.9273 -5.1786 34 1 1.2493 3.9188 -5.7186 35 1 2.2098 2.6135 -6.4571 36 1 0.1763 1.6721 -7.4858 37 1 0.3649 3.3784 -7.9569 38 1 -1.5067 1.1083 -5.8266 39 1 -2.4933 2.4210 -5.1393 40 1 -0.7541 1.6207 -3.5353 41 1 -0.5134 3.3280 -3.9795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601015717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:21 Heat of formation + Delta-G solvation = -86.441182 kcal Electronic energy + Delta-G solvation = -21132.221028 eV Core-core repulsion = 18011.768977 eV Total energy + Delta-G solvation = -3120.452051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06356 -40.06107 -37.88191 -36.74367 -34.11576 -33.65685 -31.97622 -31.19309 -27.76594 -26.35164 -24.87797 -24.29728 -23.53276 -22.09818 -20.96436 -20.16567 -18.81411 -18.02702 -17.09743 -16.88596 -16.78140 -16.25370 -15.77019 -15.66954 -15.38986 -14.89123 -14.71207 -14.58261 -14.26106 -13.62180 -13.55288 -13.39168 -13.22311 -12.92351 -12.78551 -12.66771 -12.29967 -12.24371 -12.11050 -11.98154 -11.84396 -11.76749 -11.48846 -11.07034 -10.95277 -10.73187 -10.39997 -10.33172 -9.48049 -8.36630 -6.05582 1.34202 1.39255 1.52184 1.90161 2.27012 2.80049 2.99322 3.03485 3.13572 3.63866 3.79684 3.89993 4.04536 4.09042 4.19851 4.23401 4.32122 4.39542 4.40536 4.49059 4.64225 4.64425 4.72767 4.80852 4.84112 4.85482 4.89069 4.97587 5.00486 5.11159 5.19731 5.24221 5.30661 5.31855 5.43579 5.51492 5.58179 6.18736 6.32926 6.53673 7.17135 7.48321 8.08905 8.65705 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035090 B = 0.004421 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.763985 B = 6331.970366 C = 6491.173535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.096 3.904 3 N -0.449 5.449 4 C -0.347 4.347 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.886 5.886 8 Si 0.980 3.020 9 H -0.279 1.279 10 H -0.269 1.269 11 H -0.263 1.263 12 C 0.467 3.533 13 O -0.639 6.639 14 C -0.178 4.178 15 H 0.135 0.865 16 C -0.139 4.139 17 C -0.111 4.111 18 H 0.079 0.921 19 C -0.048 4.048 20 C -0.147 4.147 21 C 0.061 3.939 22 O -0.407 6.407 23 C 0.064 3.936 24 C -0.150 4.150 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.275 0.725 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -4.684 -14.408 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.027 4.027 3 N -0.166 5.166 4 C -0.475 4.475 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.524 5.524 8 Si 0.803 3.197 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.188 1.188 12 C 0.258 3.742 13 O -0.527 6.527 14 C -0.199 4.199 15 H 0.153 0.847 16 C -0.176 4.176 17 C -0.130 4.130 18 H 0.098 0.902 19 C -0.066 4.066 20 C -0.184 4.184 21 C -0.016 4.016 22 O -0.327 6.327 23 C -0.012 4.012 24 C -0.188 4.188 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.872 -4.176 -14.329 16.874 hybrid contribution 0.627 0.452 1.551 1.732 sum -7.245 -3.724 -12.778 15.154 Atomic orbital electron populations 1.22119 0.95312 1.02532 1.01195 1.21676 0.94042 0.83344 1.03679 1.43727 1.55404 1.13078 1.04424 1.19378 1.42047 0.94798 0.91250 0.92283 1.26041 0.93396 0.96533 1.03739 1.69989 1.32176 1.15883 1.34321 0.85165 0.78726 0.78331 0.77479 1.20458 1.19347 1.18757 1.20444 0.81106 0.86927 0.85744 1.90449 1.53241 1.21268 1.87786 1.22191 1.03888 1.05121 0.88655 0.84744 1.23099 0.93660 1.00637 1.00229 1.22293 1.00381 0.96006 0.94286 0.90235 1.20776 0.92283 1.00851 0.92692 1.22212 1.00583 0.99641 0.96013 1.22722 0.81630 1.02055 0.95159 1.87891 1.35726 1.59054 1.49997 1.22664 0.97898 0.94836 0.85844 1.22212 0.95435 1.01924 0.99251 0.89448 0.94258 0.92718 0.91610 0.89294 0.91557 0.91000 0.84550 0.88600 0.92863 0.89274 0.91320 0.87697 0.91196 0.88219 0.90567 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 10.02 71.98 0.72 -4.59 16 2 C 0.10 4.16 5.31 86.38 0.46 4.62 16 3 N -0.45 -23.76 2.56 -635.53 -1.63 -25.38 16 4 C -0.35 -20.34 8.98 84.04 0.75 -19.58 16 5 H 0.06 3.74 7.70 -2.91 -0.02 3.72 16 6 C 0.01 0.30 4.92 84.93 0.42 0.71 16 7 N -0.89 -48.11 11.34 21.66 0.25 -47.86 16 8 Si 0.98 42.88 29.61 68.60 2.03 44.91 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 12 C 0.47 24.17 7.37 87.66 0.65 24.82 16 13 O -0.64 -38.87 16.08 -3.08 -0.05 -38.92 16 14 C -0.18 -6.58 4.01 -11.54 -0.05 -6.63 16 15 H 0.13 4.25 5.51 -2.39 -0.01 4.24 16 16 C -0.14 -4.34 9.89 30.62 0.30 -4.03 16 17 C -0.11 -3.54 4.68 -10.77 -0.05 -3.59 16 18 H 0.08 3.11 7.64 -2.39 -0.02 3.09 16 19 C -0.05 -1.10 2.43 -10.68 -0.03 -1.13 16 20 C -0.15 -3.03 5.40 30.69 0.17 -2.86 16 21 C 0.06 1.06 6.84 72.01 0.49 1.55 16 22 O -0.41 -9.19 10.77 -148.98 -1.60 -10.80 16 23 C 0.06 1.24 6.84 72.01 0.49 1.73 16 24 C -0.15 -3.59 5.21 30.68 0.16 -3.43 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.05 1.74 6.84 -2.39 -0.02 1.72 16 28 H 0.07 2.57 6.96 -2.39 -0.02 2.55 16 29 H 0.09 4.31 5.35 -2.38 -0.01 4.29 16 30 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.14 3.08 8.05 -2.39 -0.02 3.07 16 33 H 0.10 1.78 7.90 -2.39 -0.02 1.76 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.78 7.42 -2.39 -0.02 1.76 16 41 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -72.38 326.67 4.49 -67.89 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 1.00 Total: 22.58 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.49 Total: -12.41 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -1.38 Total: -73.25 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.65 Total: -49.72 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.38 4.49 -67.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601015717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.553 kcal (2) G-P(sol) polarization free energy of solvation -72.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds