Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00319 * 2 1 4 4 N 1.46494 * 109.47474 * 124.10733 * 3 2 1 5 5 C 1.46501 * 120.00344 * 267.80304 * 4 3 2 6 6 C 1.50703 * 109.46851 * 269.99837 * 5 4 3 7 7 H 1.07993 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99828 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99782 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47200 * 89.99756 * 10 8 6 12 12 H 1.48503 * 109.46839 * 209.99607 * 10 8 6 13 13 H 1.48495 * 109.46997 * 329.99244 * 10 8 6 14 14 C 1.34780 * 120.00293 * 87.79501 * 4 3 2 15 15 O 1.21280 * 119.99444 * 5.16630 * 14 4 3 16 16 C 1.50692 * 120.00463 * 185.16010 * 14 4 3 17 17 H 1.09005 * 110.43677 * 33.76371 * 16 14 4 18 18 C 1.54812 * 110.49024 * 271.21543 * 16 14 4 19 19 C 1.55001 * 102.09099 * 220.31077 * 18 16 14 20 20 H 1.09003 * 110.61761 * 278.36481 * 19 18 16 21 21 C 1.53000 * 110.61699 * 155.52510 * 19 18 16 22 22 O 1.44379 * 103.63117 * 36.94449 * 19 18 16 23 23 C 1.43878 * 106.90047 * 320.15843 * 22 19 18 24 24 H 1.09004 * 109.95082 * 145.78535 * 23 22 19 25 25 C 1.53001 * 109.85658 * 266.81546 * 23 22 19 26 26 H 1.08002 * 119.99600 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00210 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00210 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46867 * 4.11235 * 3 2 1 30 30 H 1.08996 * 109.47517 * 244.11535 * 3 2 1 31 31 H 1.08998 * 109.47136 * 29.99550 * 5 4 3 32 32 H 1.09004 * 109.47463 * 149.99762 * 5 4 3 33 33 H 0.96999 * 120.00034 * 180.02562 * 9 8 6 34 34 H 1.08998 * 110.90966 * 102.11267 * 18 16 14 35 35 H 1.09001 * 110.93739 * 338.52070 * 18 16 14 36 36 H 1.09006 * 109.46932 * 62.17153 * 21 19 18 37 37 H 1.09005 * 109.47300 * 302.18093 * 21 19 18 38 38 H 1.08994 * 109.47499 * 182.17792 * 21 19 18 39 39 H 1.08995 * 109.47429 * 177.91452 * 25 23 22 40 40 H 1.09006 * 109.46901 * 297.92102 * 25 23 22 41 41 H 1.08998 * 109.46973 * 57.91276 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9785 1.3408 1.1436 5 6 2.5420 1.9277 2.4129 6 6 2.8710 3.3984 2.4256 7 1 3.3569 3.8504 1.5737 8 6 2.5524 4.1665 3.5254 9 7 1.9611 3.6159 4.5631 10 14 2.9596 5.9896 3.5409 11 1 1.8165 6.7568 2.9842 12 1 3.2169 6.4275 4.9364 13 1 4.1690 6.2337 2.7146 14 6 4.2218 0.8334 1.0280 15 8 4.6157 0.4329 -0.0468 16 6 5.1224 0.7639 2.2342 17 1 4.5383 0.5753 3.1350 18 6 5.9352 2.0735 2.3798 19 6 7.3295 1.5449 2.8028 20 1 7.3523 1.3353 3.8722 21 6 8.4223 2.5482 2.4286 22 8 7.4763 0.3262 2.0426 23 6 6.1945 -0.3273 2.0483 24 1 6.0366 -0.8446 1.1019 25 6 6.1257 -1.3266 3.2049 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3575 2.1322 0.0737 30 1 2.6338 1.3954 -0.9245 31 1 1.4658 1.7952 2.5235 32 1 3.0556 1.4334 3.2375 33 1 1.7367 4.1564 5.3367 34 1 5.5096 2.7114 3.1544 35 1 5.9923 2.6042 1.4294 36 1 8.2568 3.4826 2.9651 37 1 8.3916 2.7354 1.3552 38 1 9.3968 2.1417 2.6988 39 1 5.1398 -1.7908 3.2258 40 1 6.8864 -2.0950 3.0668 41 1 6.3022 -0.8057 4.1460 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601591582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -72.380062 kcal Electronic energy + Delta-G solvation = -21634.242551 eV Core-core repulsion = 18514.400236 eV Total energy + Delta-G solvation = -3119.842315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11066 -38.23386 -35.48051 -33.61180 -32.33436 -32.27071 -31.68791 -28.68274 -27.53344 -25.90671 -24.12430 -23.00086 -21.31872 -20.60148 -19.62319 -18.14483 -16.85362 -16.60930 -15.94949 -15.55802 -15.28424 -14.66957 -14.51570 -14.23727 -13.61541 -13.33176 -12.82604 -12.77310 -12.54820 -12.42842 -12.29318 -11.87308 -11.66453 -11.61028 -11.41239 -11.17066 -11.09164 -10.93020 -10.85549 -10.72552 -10.41578 -10.35925 -10.17393 -9.78887 -9.31935 -9.21370 -8.90361 -8.57950 -7.79044 -6.23518 -4.30398 2.52898 3.17997 3.25627 3.26802 3.33342 3.94901 4.15385 4.28691 5.00257 5.06050 5.11325 5.14657 5.32812 5.37230 5.46824 5.51849 5.58528 5.63750 5.73603 5.75979 5.89090 5.96735 6.03692 6.14567 6.17054 6.28445 6.31153 6.32016 6.43627 6.54618 6.62795 6.72886 6.89349 7.02050 7.14394 7.30075 7.49824 7.71606 8.00561 8.27656 8.73988 8.95613 9.36953 10.83114 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.009254 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.306638 B = 3024.990231 C = 4712.273100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.142 3.858 4 N -0.590 5.590 5 C 0.237 3.763 6 C -0.534 4.534 7 H 0.061 0.939 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.526 3.474 15 O -0.570 6.570 16 C -0.132 4.132 17 H 0.107 0.893 18 C -0.121 4.121 19 C 0.068 3.932 20 H 0.068 0.932 21 C -0.143 4.143 22 O -0.370 6.370 23 C 0.085 3.915 24 H 0.105 0.895 25 C -0.168 4.168 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -4.940 -1.787 6.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C 0.019 3.981 4 N -0.319 5.319 5 C 0.117 3.883 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.315 3.685 15 O -0.451 6.451 16 C -0.153 4.153 17 H 0.125 0.875 18 C -0.159 4.159 19 C 0.011 3.989 20 H 0.085 0.915 21 C -0.201 4.201 22 O -0.289 6.289 23 C 0.026 3.974 24 H 0.123 0.877 25 C -0.226 4.226 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.449 -5.155 -2.238 7.168 hybrid contribution -0.296 1.140 0.409 1.247 sum 4.153 -4.015 -1.829 6.059 Atomic orbital electron populations 1.23772 0.95765 1.01563 1.01858 1.23380 0.96080 0.99289 0.98724 1.20412 0.92517 0.94714 0.90421 1.48199 1.11785 1.57386 1.14541 1.19484 0.96419 0.93224 0.79155 1.21459 1.40104 0.93433 1.02246 0.92083 1.24918 0.94825 0.98684 0.95277 1.69919 1.40710 1.36309 1.05900 0.86572 0.79025 0.85000 0.77396 1.20543 1.21041 1.19660 1.20161 0.82016 0.76923 0.89447 1.90588 1.74702 1.50905 1.28943 1.22620 0.96838 0.97142 0.98738 0.87462 1.23020 0.93085 0.96030 1.03807 1.23167 0.95227 0.85199 0.95337 0.91453 1.21746 0.97790 0.97969 1.02567 1.88891 1.30576 1.35715 1.73745 1.22705 0.82229 0.92617 0.99809 0.87730 1.22284 1.02090 0.99436 0.98768 0.88895 0.88431 0.87884 0.89844 0.90194 0.94643 0.94277 0.92506 0.88127 0.90567 0.91138 0.91873 0.92305 0.91673 0.92070 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 14.32 29.02 0.42 -2.33 16 2 C -0.16 -2.55 9.83 -36.02 -0.35 -2.90 16 3 C 0.14 2.64 5.87 -5.20 -0.03 2.61 16 4 N -0.59 -12.24 2.44 -176.44 -0.43 -12.67 16 5 C 0.24 5.42 5.04 -5.19 -0.03 5.40 16 6 C -0.53 -13.23 8.75 -34.44 -0.30 -13.53 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 10 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 14 C 0.53 10.94 6.70 -10.99 -0.07 10.87 16 15 O -0.57 -12.92 15.19 5.56 0.08 -12.84 16 16 C -0.13 -2.44 2.29 -90.24 -0.21 -2.65 16 17 H 0.11 1.98 5.75 -51.93 -0.30 1.68 16 18 C -0.12 -2.20 5.82 -24.72 -0.14 -2.34 16 19 C 0.07 1.08 3.92 -25.67 -0.10 0.98 16 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.14 -1.95 9.65 37.16 0.36 -1.59 16 22 O -0.37 -6.50 10.91 -35.23 -0.38 -6.89 16 23 C 0.08 1.44 3.63 -26.15 -0.09 1.35 16 24 H 0.10 1.93 6.77 -51.93 -0.35 1.58 16 25 C -0.17 -2.36 9.30 37.16 0.35 -2.01 16 26 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 27 H 0.10 1.35 7.84 -52.49 -0.41 0.94 16 28 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.08 1.52 7.70 -51.93 -0.40 1.12 16 30 H 0.08 1.50 7.42 -51.93 -0.39 1.12 16 31 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 0.92 5.81 -51.93 -0.30 0.62 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.10 1.91 7.81 -51.93 -0.41 1.51 16 35 H 0.08 1.48 7.78 -51.93 -0.40 1.08 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.46 15.07 5.09 5.09 Total: -1.00 -27.76 337.46 -6.97 -34.73 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.73 Total: 5.18 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.31 Total: -4.57 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.31 Total: -35.56 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.30 Total: -19.73 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.76 -6.97 -34.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601591582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.654 kcal (2) G-P(sol) polarization free energy of solvation -27.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds