Wall clock time and date at job start Mon Mar 30 2020 04:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00319 * 2 1 4 4 N 1.46494 * 109.47474 * 124.10733 * 3 2 1 5 5 C 1.46501 * 120.00344 * 267.80304 * 4 3 2 6 6 C 1.50703 * 109.46851 * 269.99837 * 5 4 3 7 7 H 1.07993 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99828 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99782 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47200 * 89.99756 * 10 8 6 12 12 H 1.48503 * 109.46839 * 209.99607 * 10 8 6 13 13 H 1.48495 * 109.46997 * 329.99244 * 10 8 6 14 14 C 1.34780 * 120.00293 * 87.79501 * 4 3 2 15 15 O 1.21280 * 119.99444 * 5.16630 * 14 4 3 16 16 C 1.50692 * 120.00463 * 185.16010 * 14 4 3 17 17 H 1.09005 * 110.43677 * 33.76371 * 16 14 4 18 18 C 1.54812 * 110.49024 * 271.21543 * 16 14 4 19 19 C 1.55001 * 102.09099 * 220.31077 * 18 16 14 20 20 H 1.09003 * 110.61761 * 278.36481 * 19 18 16 21 21 C 1.53000 * 110.61699 * 155.52510 * 19 18 16 22 22 O 1.44379 * 103.63117 * 36.94449 * 19 18 16 23 23 C 1.43878 * 106.90047 * 320.15843 * 22 19 18 24 24 H 1.09004 * 109.95082 * 145.78535 * 23 22 19 25 25 C 1.53001 * 109.85658 * 266.81546 * 23 22 19 26 26 H 1.08002 * 119.99600 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00210 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00210 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46867 * 4.11235 * 3 2 1 30 30 H 1.08996 * 109.47517 * 244.11535 * 3 2 1 31 31 H 1.08998 * 109.47136 * 29.99550 * 5 4 3 32 32 H 1.09004 * 109.47463 * 149.99762 * 5 4 3 33 33 H 0.96999 * 120.00034 * 180.02562 * 9 8 6 34 34 H 1.08998 * 110.90966 * 102.11267 * 18 16 14 35 35 H 1.09001 * 110.93739 * 338.52070 * 18 16 14 36 36 H 1.09006 * 109.46932 * 62.17153 * 21 19 18 37 37 H 1.09005 * 109.47300 * 302.18093 * 21 19 18 38 38 H 1.08994 * 109.47499 * 182.17792 * 21 19 18 39 39 H 1.08995 * 109.47429 * 177.91452 * 25 23 22 40 40 H 1.09006 * 109.46901 * 297.92102 * 25 23 22 41 41 H 1.08998 * 109.46973 * 57.91276 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9785 1.3408 1.1436 5 6 2.5420 1.9277 2.4129 6 6 2.8710 3.3984 2.4256 7 1 3.3569 3.8504 1.5737 8 6 2.5524 4.1665 3.5254 9 7 1.9611 3.6159 4.5631 10 14 2.9596 5.9896 3.5409 11 1 1.8165 6.7568 2.9842 12 1 3.2169 6.4275 4.9364 13 1 4.1690 6.2337 2.7146 14 6 4.2218 0.8334 1.0280 15 8 4.6157 0.4329 -0.0468 16 6 5.1224 0.7639 2.2342 17 1 4.5383 0.5753 3.1350 18 6 5.9352 2.0735 2.3798 19 6 7.3295 1.5449 2.8028 20 1 7.3523 1.3353 3.8722 21 6 8.4223 2.5482 2.4286 22 8 7.4763 0.3262 2.0426 23 6 6.1945 -0.3273 2.0483 24 1 6.0366 -0.8446 1.1019 25 6 6.1257 -1.3266 3.2049 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3575 2.1322 0.0737 30 1 2.6338 1.3954 -0.9245 31 1 1.4658 1.7952 2.5235 32 1 3.0556 1.4334 3.2375 33 1 1.7367 4.1564 5.3367 34 1 5.5096 2.7114 3.1544 35 1 5.9923 2.6042 1.4294 36 1 8.2568 3.4826 2.9651 37 1 8.3916 2.7354 1.3552 38 1 9.3968 2.1417 2.6988 39 1 5.1398 -1.7908 3.2258 40 1 6.8864 -2.0950 3.0668 41 1 6.3022 -0.8057 4.1460 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601591582.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:43 Heat of formation + Delta-G solvation = -87.206636 kcal Electronic energy + Delta-G solvation = -21634.885480 eV Core-core repulsion = 18514.400236 eV Total energy + Delta-G solvation = -3120.485243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62811 -39.74047 -37.13491 -35.23799 -34.05339 -33.53462 -33.11282 -29.91010 -29.35606 -27.40606 -25.51785 -24.82205 -22.72323 -21.93048 -20.94143 -19.76432 -18.54783 -18.33755 -17.52190 -17.03161 -16.74049 -16.35858 -16.12165 -15.58914 -15.01541 -14.77957 -14.32873 -14.16321 -14.09140 -13.86515 -13.52006 -13.47092 -13.12444 -13.03265 -12.83615 -12.73089 -12.67115 -12.48668 -12.27888 -12.27027 -11.98607 -11.75904 -11.72368 -11.60721 -10.84510 -10.57402 -10.56646 -10.27410 -9.52161 -8.19238 -6.32129 1.25569 1.40748 1.44387 1.52330 1.66058 2.33459 2.46519 2.84169 3.11477 3.55775 3.63740 3.79302 4.02667 4.06169 4.12502 4.19304 4.26940 4.40732 4.45675 4.49627 4.56223 4.69152 4.77690 4.84194 4.88510 4.93060 5.00990 5.04727 5.09509 5.18077 5.23761 5.25563 5.29017 5.60060 5.65228 5.74579 5.90491 5.98311 6.06633 6.52753 6.80337 7.24876 7.40255 8.86496 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.011696 B = 0.009254 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.306638 B = 3024.990231 C = 4712.273100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.180 4.180 3 C 0.140 3.860 4 N -0.592 5.592 5 C 0.253 3.747 6 C -0.537 4.537 7 H 0.049 0.951 8 C 0.029 3.971 9 N -0.916 5.916 10 Si 0.948 3.052 11 H -0.279 1.279 12 H -0.280 1.280 13 H -0.270 1.270 14 C 0.522 3.478 15 O -0.593 6.593 16 C -0.132 4.132 17 H 0.108 0.892 18 C -0.119 4.119 19 C 0.070 3.930 20 H 0.086 0.914 21 C -0.141 4.141 22 O -0.382 6.382 23 C 0.087 3.913 24 H 0.087 0.913 25 C -0.161 4.161 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.020 0.980 32 H 0.034 0.966 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 -4.944 -1.122 6.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.200 4.200 3 C 0.018 3.982 4 N -0.321 5.321 5 C 0.133 3.867 6 C -0.575 4.575 7 H 0.068 0.932 8 C -0.172 4.172 9 N -0.555 5.555 10 Si 0.774 3.226 11 H -0.205 1.205 12 H -0.205 1.205 13 H -0.194 1.194 14 C 0.311 3.689 15 O -0.475 6.475 16 C -0.153 4.153 17 H 0.126 0.874 18 C -0.157 4.157 19 C 0.013 3.987 20 H 0.104 0.896 21 C -0.198 4.198 22 O -0.302 6.302 23 C 0.029 3.971 24 H 0.105 0.895 25 C -0.219 4.219 26 H 0.138 0.862 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.673 -5.162 -1.583 7.140 hybrid contribution -0.441 1.138 0.150 1.230 sum 4.232 -4.024 -1.433 6.013 Atomic orbital electron populations 1.24031 0.94931 1.03107 0.98084 1.23166 0.96774 0.97866 1.02160 1.20498 0.92270 0.96220 0.89252 1.48227 1.12306 1.57113 1.14468 1.19145 0.95170 0.92475 0.79927 1.21540 1.39805 0.94342 1.01851 0.93227 1.25518 0.94672 1.02094 0.94943 1.69995 1.41520 1.37629 1.06384 0.85707 0.78720 0.80743 0.77479 1.20466 1.20503 1.19437 1.20558 0.82100 0.76348 0.89895 1.90567 1.75052 1.51924 1.30005 1.22654 0.96922 0.98189 0.97507 0.87438 1.22946 0.94824 0.95523 1.02389 1.23306 0.94325 0.84918 0.96111 0.89621 1.21768 0.97875 0.98063 1.02122 1.88875 1.30585 1.36352 1.74395 1.22678 0.81553 0.92507 1.00382 0.89523 1.22226 1.03102 0.98958 0.97565 0.86225 0.87861 0.88211 0.89935 0.91074 0.96211 0.94831 0.92328 0.89219 0.92536 0.89705 0.92912 0.90485 0.90971 0.90572 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 14.32 67.78 0.97 -3.41 16 2 C -0.18 -5.85 9.83 25.65 0.25 -5.59 16 3 C 0.14 5.28 5.87 85.63 0.50 5.78 16 4 N -0.59 -25.06 2.44 -830.52 -2.03 -27.09 16 5 C 0.25 11.75 5.04 85.63 0.43 12.18 16 6 C -0.54 -26.77 8.75 25.60 0.22 -26.54 16 7 H 0.05 2.56 7.81 -2.91 -0.02 2.53 16 8 C 0.03 1.43 5.46 84.66 0.46 1.90 16 9 N -0.92 -48.32 13.29 21.45 0.28 -48.04 16 10 Si 0.95 40.33 29.54 68.60 2.03 42.36 16 11 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 14 C 0.52 22.15 6.70 87.65 0.59 22.74 16 15 O -0.59 -27.53 15.19 -3.03 -0.05 -27.58 16 16 C -0.13 -4.89 2.29 -10.55 -0.02 -4.91 16 17 H 0.11 3.97 5.75 -2.38 -0.01 3.96 16 18 C -0.12 -4.30 5.82 31.90 0.19 -4.12 16 19 C 0.07 2.14 3.92 31.28 0.12 2.26 16 20 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 21 C -0.14 -3.60 9.65 71.98 0.69 -2.90 16 22 O -0.38 -13.07 10.91 -148.98 -1.62 -14.69 16 23 C 0.09 2.92 3.63 30.97 0.11 3.04 16 24 H 0.09 3.23 6.77 -2.39 -0.02 3.21 16 25 C -0.16 -4.25 9.30 71.98 0.67 -3.58 16 26 H 0.12 2.59 8.06 -2.91 -0.02 2.56 16 27 H 0.10 2.66 7.84 -2.91 -0.02 2.64 16 28 H 0.10 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.08 3.06 7.70 -2.39 -0.02 3.04 16 30 H 0.07 2.76 7.42 -2.39 -0.02 2.75 16 31 H 0.02 0.98 8.07 -2.39 -0.02 0.96 16 32 H 0.03 1.60 5.81 -2.38 -0.01 1.59 16 33 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.09 3.42 7.81 -2.39 -0.02 3.40 16 35 H 0.06 2.24 7.78 -2.39 -0.02 2.22 16 36 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 37 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -58.38 337.46 4.79 -53.60 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.99 Total: 24.61 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.19 Total: -3.17 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -1.74 Total: -75.13 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.67 Total: -42.27 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -58.38 4.79 -53.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601591582.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.611 kcal (2) G-P(sol) polarization free energy of solvation -58.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds