Wall clock time and date at job start Mon Mar 30 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00057 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.53001 * 112.94433 * 179.97438 * 4 3 2 6 6 C 1.53006 * 117.49815 * 48.40748 * 5 4 3 7 7 C 1.53007 * 60.03042 * 107.50401 * 6 5 4 8 8 C 1.53943 * 113.84252 * 311.68184 * 4 3 2 9 9 N 1.47579 * 86.11560 * 90.74945 * 8 4 3 10 10 C 1.34781 * 134.49664 * 204.64006 * 9 8 4 11 11 O 1.21284 * 119.99529 * 357.21280 * 10 9 8 12 12 C 1.50700 * 120.00003 * 177.21365 * 10 9 8 13 13 H 1.09000 * 109.47328 * 335.67734 * 12 10 9 14 14 C 1.52994 * 109.47168 * 95.68374 * 12 10 9 15 15 C 1.50700 * 109.46825 * 215.68490 * 12 10 9 16 16 H 1.08005 * 120.00305 * 359.97438 * 15 12 10 17 17 C 1.37877 * 120.00242 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99849 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00104 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46894 * 90.00054 * 19 17 15 21 21 H 1.48509 * 109.46895 * 209.99753 * 19 17 15 22 22 H 1.48490 * 109.47157 * 329.99733 * 19 17 15 23 23 C 1.47580 * 91.01452 * 24.64392 * 9 8 4 24 24 H 1.08997 * 109.46974 * 59.99603 * 1 2 3 25 25 H 1.08992 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46929 * 300.00459 * 1 2 3 27 27 H 1.08998 * 109.47325 * 60.00012 * 3 2 1 28 28 H 1.08998 * 109.47236 * 300.00313 * 3 2 1 29 29 H 1.09005 * 115.55054 * 262.74010 * 5 4 3 30 30 H 1.09007 * 117.49566 * 215.00116 * 6 5 4 31 31 H 1.08992 * 117.49929 * 0.02562 * 6 5 4 32 32 H 1.08998 * 117.49660 * 107.49991 * 7 6 5 33 33 H 1.08999 * 117.49410 * 252.51946 * 7 6 5 34 34 H 1.08996 * 113.77484 * 205.05590 * 8 4 3 35 35 H 1.09000 * 113.76817 * 336.45327 * 8 4 3 36 36 H 1.09003 * 109.47104 * 186.92163 * 14 12 10 37 37 H 1.09000 * 109.47325 * 306.92223 * 14 12 10 38 38 H 1.09003 * 109.47446 * 66.92697 * 14 12 10 39 39 H 0.97001 * 120.00032 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.77272 * 221.05775 * 23 9 8 41 41 H 1.09004 * 113.77236 * 89.65651 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.2413 2.5421 -0.0013 6 6 3.7684 3.5848 1.0136 7 6 5.1153 2.8853 1.2077 8 6 4.0823 0.2019 1.0506 9 7 3.9775 -0.8265 -0.0027 10 6 3.8431 -2.1676 -0.0036 11 8 3.8351 -2.7768 1.0451 12 6 3.7028 -2.9100 -1.3075 13 1 3.3058 -2.2373 -2.0677 14 6 5.0729 -3.4276 -1.7496 15 6 2.7616 -4.0726 -1.1247 16 1 2.3104 -4.2559 -0.1607 17 6 2.4771 -4.9031 -2.1879 18 7 3.0268 -4.6803 -3.3617 19 14 1.3109 -6.3447 -1.9612 20 1 -0.0784 -5.9078 -2.2516 21 1 1.6902 -7.4391 -2.8906 22 1 1.3939 -6.8330 -0.5613 23 6 4.0790 0.2033 -1.0549 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 4.5681 2.9016 -0.9771 30 1 3.7840 4.6303 0.7055 31 1 2.9547 3.3035 1.6821 32 1 6.0169 3.4706 1.0272 33 1 5.1872 2.1438 2.0033 34 1 5.1064 0.4127 1.3585 35 1 3.4088 0.0390 1.8920 36 1 4.9943 -3.8563 -2.7488 37 1 5.7858 -2.6032 -1.7631 38 1 5.4149 -4.1923 -1.0522 39 1 2.8264 -5.2643 -4.1099 40 1 3.4030 0.0418 -1.8946 41 1 5.1023 0.4147 -1.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601776185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:52 Heat of formation + Delta-G solvation = -17.896623 kcal Electronic energy + Delta-G solvation = -21558.840331 eV Core-core repulsion = 18441.360596 eV Total energy + Delta-G solvation = -3117.479735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47460 -37.78746 -37.02210 -35.67590 -33.54831 -30.61417 -29.66228 -26.91296 -26.07071 -25.31509 -25.07367 -23.06782 -22.35791 -21.55279 -18.60093 -18.11725 -16.69587 -16.20640 -16.01043 -15.77818 -15.43927 -15.10518 -14.66468 -14.15875 -13.94097 -13.57445 -12.95735 -12.78352 -12.57858 -12.36508 -11.93790 -11.66154 -11.55978 -11.38307 -11.16422 -10.95143 -10.90308 -10.73846 -10.60052 -10.52984 -10.20805 -10.16399 -10.04754 -9.94416 -9.38297 -8.88487 -8.42601 -8.16923 -7.82113 -5.94774 -3.96478 3.37303 3.42760 3.47004 3.51151 3.67701 3.95117 4.06634 4.23168 4.53358 4.70553 4.80284 4.88981 5.01943 5.25207 5.33525 5.38711 5.46897 5.49097 5.55297 5.65330 5.66265 5.72672 5.76256 5.84756 5.93264 5.98963 6.00270 6.06314 6.16279 6.29953 6.72068 6.89596 7.02640 7.14265 7.44080 7.63739 7.86585 8.09801 8.34911 8.70532 9.07373 9.46225 9.67150 11.13306 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.005654 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.651173 B = 4951.488647 C = 5430.722588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.363 6.363 3 C 0.089 3.911 4 C -0.072 4.072 5 C -0.135 4.135 6 C -0.180 4.180 7 C -0.177 4.177 8 C 0.115 3.885 9 N -0.635 5.635 10 C 0.555 3.445 11 O -0.556 6.556 12 C 0.041 3.959 13 H 0.042 0.958 14 C -0.125 4.125 15 C -0.491 4.491 16 H 0.065 0.935 17 C 0.059 3.941 18 N -0.896 5.896 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.125 3.875 24 H 0.037 0.963 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.007 0.993 38 H 0.035 0.965 39 H 0.259 0.741 40 H 0.083 0.917 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 18.000 4.024 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.012 3.988 4 C -0.073 4.073 5 C -0.154 4.154 6 C -0.217 4.217 7 C -0.214 4.214 8 C -0.008 4.008 9 N -0.372 5.372 10 C 0.349 3.651 11 O -0.433 6.433 12 C 0.020 3.980 13 H 0.060 0.940 14 C -0.183 4.183 15 C -0.530 4.530 16 H 0.083 0.917 17 C -0.141 4.141 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.198 1.198 23 C 0.001 3.999 24 H 0.055 0.945 25 H 0.107 0.893 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.026 0.974 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.390 17.140 4.413 17.704 hybrid contribution -0.816 -0.409 -0.009 0.912 sum -0.426 16.732 4.404 17.307 Atomic orbital electron populations 1.22710 0.81516 1.03112 0.98899 1.88177 1.18908 1.25940 1.95108 1.22055 0.91193 0.85679 0.99897 1.22032 0.93934 0.92235 0.99071 1.22072 1.03346 0.94548 0.95399 1.22959 0.98299 0.97421 1.02995 1.23096 0.94514 1.03550 1.00197 1.23057 0.99656 0.84950 0.93155 1.49903 1.74722 1.04720 1.07836 1.21598 0.72106 0.78193 0.93250 1.90519 1.51366 1.66260 1.35170 1.18744 0.95675 0.95097 0.88501 0.94005 1.21656 0.94634 0.98096 1.03913 1.21005 1.25163 1.10100 0.96734 0.91726 1.24913 0.96346 0.97796 0.95076 1.69896 1.43977 1.38871 1.00862 0.86490 0.80865 0.81994 0.78094 1.20768 1.21267 1.19775 1.22971 1.00106 0.83945 0.92855 0.94460 0.89328 0.94869 0.93363 0.92962 0.86981 0.88859 0.88782 0.88690 0.88213 0.90624 0.90973 0.89327 0.97354 0.94559 0.93086 0.89861 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -6.26 9.02 -35.23 -0.32 -6.58 16 3 C 0.09 1.15 5.19 37.16 0.19 1.34 16 4 C -0.07 -0.92 1.25 -153.58 -0.19 -1.11 16 5 C -0.13 -1.28 5.55 -90.58 -0.50 -1.78 16 6 C -0.18 -1.45 9.80 -26.72 -0.26 -1.72 16 7 C -0.18 -1.52 9.54 -26.69 -0.25 -1.77 16 8 C 0.12 1.81 6.86 -2.98 -0.02 1.79 16 9 N -0.63 -12.69 2.59 -178.01 -0.46 -13.15 16 10 C 0.55 14.09 7.03 -10.98 -0.08 14.02 16 11 O -0.56 -16.03 16.87 5.55 0.09 -15.93 16 12 C 0.04 1.10 2.51 -92.93 -0.23 0.87 16 13 H 0.04 1.15 7.47 -51.93 -0.39 0.76 16 14 C -0.12 -3.18 8.85 37.15 0.33 -2.85 16 15 C -0.49 -14.59 8.31 -34.44 -0.29 -14.88 16 16 H 0.06 2.02 7.27 -52.48 -0.38 1.64 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 18 N -0.90 -25.94 11.40 55.43 0.63 -25.31 16 19 Si 0.90 22.36 29.54 -169.99 -5.02 17.33 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.13 1.94 7.27 -2.98 -0.02 1.92 16 24 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.55 7.02 -51.93 -0.36 0.18 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.09 0.78 7.13 -51.93 -0.37 0.41 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.92 6.24 -51.93 -0.32 0.59 16 34 H 0.08 1.06 6.44 -51.93 -0.33 0.73 16 35 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.09 2.38 6.29 -51.93 -0.33 2.05 16 37 H 0.01 0.17 8.13 -51.93 -0.42 -0.25 16 38 H 0.04 0.94 8.13 -51.93 -0.42 0.52 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.08 1.37 7.77 -51.93 -0.40 0.96 16 41 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -34.15 332.63 -7.05 -41.20 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.67 Total: -1.59 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.31 Total: -0.98 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.17 Total: -38.46 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.22 Total: -22.52 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.15 -7.05 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601776185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.302 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds