Wall clock time and date at job start Mon Mar 30 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00057 * 2 1 4 4 C 1.53000 * 109.47093 * 180.02562 * 3 2 1 5 5 C 1.53001 * 112.94433 * 179.97438 * 4 3 2 6 6 C 1.53006 * 117.49815 * 48.40748 * 5 4 3 7 7 C 1.53007 * 60.03042 * 107.50401 * 6 5 4 8 8 C 1.53943 * 113.84252 * 311.68184 * 4 3 2 9 9 N 1.47579 * 86.11560 * 90.74945 * 8 4 3 10 10 C 1.34781 * 134.49664 * 204.64006 * 9 8 4 11 11 O 1.21284 * 119.99529 * 357.21280 * 10 9 8 12 12 C 1.50700 * 120.00003 * 177.21365 * 10 9 8 13 13 H 1.09000 * 109.47328 * 335.67734 * 12 10 9 14 14 C 1.52994 * 109.47168 * 95.68374 * 12 10 9 15 15 C 1.50700 * 109.46825 * 215.68490 * 12 10 9 16 16 H 1.08005 * 120.00305 * 359.97438 * 15 12 10 17 17 C 1.37877 * 120.00242 * 180.02562 * 15 12 10 18 18 N 1.31515 * 119.99849 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 120.00104 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46894 * 90.00054 * 19 17 15 21 21 H 1.48509 * 109.46895 * 209.99753 * 19 17 15 22 22 H 1.48490 * 109.47157 * 329.99733 * 19 17 15 23 23 C 1.47580 * 91.01452 * 24.64392 * 9 8 4 24 24 H 1.08997 * 109.46974 * 59.99603 * 1 2 3 25 25 H 1.08992 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46929 * 300.00459 * 1 2 3 27 27 H 1.08998 * 109.47325 * 60.00012 * 3 2 1 28 28 H 1.08998 * 109.47236 * 300.00313 * 3 2 1 29 29 H 1.09005 * 115.55054 * 262.74010 * 5 4 3 30 30 H 1.09007 * 117.49566 * 215.00116 * 6 5 4 31 31 H 1.08992 * 117.49929 * 0.02562 * 6 5 4 32 32 H 1.08998 * 117.49660 * 107.49991 * 7 6 5 33 33 H 1.08999 * 117.49410 * 252.51946 * 7 6 5 34 34 H 1.08996 * 113.77484 * 205.05590 * 8 4 3 35 35 H 1.09000 * 113.76817 * 336.45327 * 8 4 3 36 36 H 1.09003 * 109.47104 * 186.92163 * 14 12 10 37 37 H 1.09000 * 109.47325 * 306.92223 * 14 12 10 38 38 H 1.09003 * 109.47446 * 66.92697 * 14 12 10 39 39 H 0.97001 * 120.00032 * 180.02562 * 18 17 15 40 40 H 1.08999 * 113.77272 * 221.05775 * 23 9 8 41 41 H 1.09004 * 113.77236 * 89.65651 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.2413 2.5421 -0.0013 6 6 3.7684 3.5848 1.0136 7 6 5.1153 2.8853 1.2077 8 6 4.0823 0.2019 1.0506 9 7 3.9775 -0.8265 -0.0027 10 6 3.8431 -2.1676 -0.0036 11 8 3.8351 -2.7768 1.0451 12 6 3.7028 -2.9100 -1.3075 13 1 3.3058 -2.2373 -2.0677 14 6 5.0729 -3.4276 -1.7496 15 6 2.7616 -4.0726 -1.1247 16 1 2.3104 -4.2559 -0.1607 17 6 2.4771 -4.9031 -2.1879 18 7 3.0268 -4.6803 -3.3617 19 14 1.3109 -6.3447 -1.9612 20 1 -0.0784 -5.9078 -2.2516 21 1 1.6902 -7.4391 -2.8906 22 1 1.3939 -6.8330 -0.5613 23 6 4.0790 0.2033 -1.0549 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 4.5681 2.9016 -0.9771 30 1 3.7840 4.6303 0.7055 31 1 2.9547 3.3035 1.6821 32 1 6.0169 3.4706 1.0272 33 1 5.1872 2.1438 2.0033 34 1 5.1064 0.4127 1.3585 35 1 3.4088 0.0390 1.8920 36 1 4.9943 -3.8563 -2.7488 37 1 5.7858 -2.6032 -1.7631 38 1 5.4149 -4.1923 -1.0522 39 1 2.8264 -5.2643 -4.1099 40 1 3.4030 0.0418 -1.8946 41 1 5.1023 0.4147 -1.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601776185.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:52 Heat of formation + Delta-G solvation = -39.746961 kcal Electronic energy + Delta-G solvation = -21559.787833 eV Core-core repulsion = 18441.360596 eV Total energy + Delta-G solvation = -3118.427237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.75154 -39.51290 -38.11996 -36.84625 -35.72568 -32.64855 -31.08112 -28.19117 -27.37781 -27.29103 -26.53968 -24.34960 -23.30192 -22.89630 -20.03184 -19.39065 -18.40973 -17.87174 -17.62971 -17.04380 -16.72401 -16.52525 -16.01112 -15.69333 -15.49441 -14.85681 -14.57151 -14.37901 -14.02293 -13.90953 -13.47358 -13.08689 -12.99355 -12.83700 -12.63055 -12.62234 -12.28651 -12.24254 -12.14844 -12.09306 -12.02110 -11.70551 -11.09435 -11.05458 -10.91025 -10.57384 -10.49568 -10.17521 -9.41697 -8.16036 -6.26224 1.37753 1.39427 1.51473 2.02307 2.09183 2.44931 2.75284 3.11655 3.12850 3.14392 3.75803 3.86428 4.08509 4.16284 4.21873 4.31834 4.39546 4.46292 4.52935 4.54611 4.60418 4.65793 4.70038 4.77005 4.80487 4.86109 4.88637 4.92886 5.01055 5.10418 5.17250 5.20825 5.36188 5.38414 5.49391 5.69519 5.89758 6.21029 6.37484 6.75265 6.95629 7.38794 7.57836 8.90720 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.005654 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.651173 B = 4951.488647 C = 5430.722588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.410 6.410 3 C 0.081 3.919 4 C -0.047 4.047 5 C -0.139 4.139 6 C -0.167 4.167 7 C -0.178 4.178 8 C 0.110 3.890 9 N -0.640 5.640 10 C 0.550 3.450 11 O -0.607 6.607 12 C 0.040 3.960 13 H 0.031 0.969 14 C -0.111 4.111 15 C -0.523 4.523 16 H 0.035 0.965 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.957 3.043 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.281 1.281 23 C 0.117 3.883 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.018 0.982 39 H 0.266 0.734 40 H 0.071 0.929 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 20.432 3.550 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.329 6.329 3 C 0.005 3.995 4 C -0.047 4.047 5 C -0.158 4.158 6 C -0.204 4.204 7 C -0.214 4.214 8 C -0.012 4.012 9 N -0.374 5.374 10 C 0.343 3.657 11 O -0.489 6.489 12 C 0.019 3.981 13 H 0.049 0.951 14 C -0.170 4.170 15 C -0.561 4.561 16 H 0.054 0.946 17 C -0.177 4.177 18 N -0.549 5.549 19 Si 0.782 3.218 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.207 1.207 23 C -0.005 4.005 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.537 19.652 3.907 20.044 hybrid contribution -0.853 -1.063 0.135 1.369 sum -0.316 18.589 4.042 19.026 Atomic orbital electron populations 1.22756 0.80413 1.02304 1.00908 1.88115 1.20532 1.28763 1.95486 1.22328 0.90992 0.84401 1.01763 1.21859 0.94152 0.93281 0.95445 1.21986 1.04088 0.92796 0.96914 1.23046 0.97778 0.97989 1.01614 1.23169 0.95573 1.03566 0.99130 1.23381 1.00918 0.84149 0.92717 1.49870 1.72250 1.03865 1.11397 1.21167 0.72536 0.80184 0.91840 1.90470 1.54163 1.68112 1.36149 1.18625 0.95641 0.94479 0.89336 0.95108 1.21468 0.94747 0.98490 1.02248 1.21076 1.26862 1.12206 0.95962 0.94637 1.25593 0.97591 0.99906 0.94659 1.69963 1.44207 1.39556 1.01202 0.85579 0.79389 0.79130 0.77698 1.19454 1.19609 1.20674 1.23343 1.01714 0.82974 0.92447 0.92596 0.91657 0.92601 0.91377 0.90988 0.85121 0.86882 0.89042 0.87033 0.89175 0.88410 0.92548 0.90768 0.94389 0.96283 0.92485 0.91019 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.41 -14.14 9.02 -148.98 -1.34 -15.49 16 3 C 0.08 1.95 5.19 71.98 0.37 2.32 16 4 C -0.05 -1.09 1.25 -51.52 -0.06 -1.16 16 5 C -0.14 -2.11 5.55 -10.77 -0.06 -2.17 16 6 C -0.17 -2.03 9.80 30.60 0.30 -1.73 16 7 C -0.18 -2.41 9.54 30.62 0.29 -2.11 16 8 C 0.11 3.39 6.86 86.48 0.59 3.98 16 9 N -0.64 -25.70 2.59 -835.48 -2.17 -27.87 16 10 C 0.55 28.92 7.03 87.66 0.62 29.53 16 11 O -0.61 -36.69 16.87 -3.04 -0.05 -36.74 16 12 C 0.04 2.24 2.51 -12.29 -0.03 2.21 16 13 H 0.03 1.75 7.47 -2.39 -0.02 1.73 16 14 C -0.11 -5.79 8.85 71.98 0.64 -5.15 16 15 C -0.52 -32.30 8.31 25.60 0.21 -32.09 16 16 H 0.04 2.35 7.27 -2.91 -0.02 2.33 16 17 C 0.02 1.27 5.30 84.65 0.45 1.72 16 18 N -0.91 -53.01 11.40 21.45 0.24 -52.77 16 19 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 23 C 0.12 3.49 7.27 86.48 0.63 4.12 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16 27 H 0.07 1.36 7.02 -2.39 -0.02 1.34 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.13 1.59 8.14 -2.38 -0.02 1.58 16 30 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.19 7.13 -2.39 -0.02 1.17 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.41 6.24 -2.39 -0.01 1.40 16 34 H 0.10 2.58 6.44 -2.39 -0.02 2.57 16 35 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 36 H 0.07 4.04 6.29 -2.39 -0.01 4.02 16 37 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.02 0.99 8.13 -2.39 -0.02 0.97 16 39 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 40 H 0.07 2.31 7.77 -2.39 -0.02 2.29 16 41 H 0.10 2.55 8.10 -2.38 -0.02 2.54 16 Total: -1.00 -77.06 332.63 4.90 -72.16 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 1.00 Total: 10.62 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 5.20 Total: 1.62 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.92 Total: -80.64 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -1.40 Total: -52.23 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.06 4.90 -72.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601776185.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.411 kcal (2) G-P(sol) polarization free energy of solvation -77.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds