Wall clock time and date at job start Mon Mar 30 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47447 * 180.02562 * 15 14 12 17 17 O 1.20763 * 119.99706 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00471 * 180.02562 * 16 15 14 19 19 C 1.53003 * 110.01528 * 59.29780 * 18 16 15 20 20 C 1.54269 * 110.03366 * 297.90793 * 18 16 15 21 21 C 1.54958 * 104.16349 * 217.13225 * 20 18 16 22 22 C 1.54894 * 102.77630 * 37.88956 * 21 20 18 23 23 C 1.53873 * 110.03618 * 180.69041 * 18 16 15 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 30 30 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 31 31 H 1.08995 * 109.46878 * 60.70413 * 19 18 16 32 32 H 1.09005 * 109.46988 * 180.70451 * 19 18 16 33 33 H 1.08993 * 109.46951 * 300.70124 * 19 18 16 34 34 H 1.08999 * 110.48703 * 335.78598 * 20 18 16 35 35 H 1.09002 * 110.48211 * 98.42369 * 20 18 16 36 36 H 1.08997 * 110.72520 * 279.57782 * 21 20 18 37 37 H 1.09001 * 110.92539 * 156.29243 * 21 20 18 38 38 H 1.08996 * 110.48927 * 203.40534 * 22 21 20 39 39 H 1.09003 * 110.48869 * 80.75927 * 22 21 20 40 40 H 1.09000 * 110.03272 * 238.56934 * 23 18 16 41 41 H 1.09003 * 110.03262 * 359.95528 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6936 -0.2292 -4.8812 17 8 0.9996 0.7529 -4.7703 18 6 2.0576 -0.7439 -6.2500 19 6 1.5593 -2.1806 -6.4188 20 6 3.5868 -0.6885 -6.4459 21 6 3.7643 -0.2865 -7.9319 22 6 2.6179 0.7319 -8.1506 23 6 1.4416 0.1584 -7.3335 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 3.2855 -0.9395 -3.6507 30 1 1.8325 -1.9678 -3.6511 31 1 0.4745 -2.2034 -6.3155 32 1 1.8380 -2.5482 -7.4065 33 1 2.0104 -2.8138 -5.6549 34 1 4.0282 0.0635 -5.7920 35 1 4.0310 -1.6662 -6.2588 36 1 3.6415 -1.1520 -8.5830 37 1 4.7344 0.1831 -8.0949 38 1 2.3559 0.7904 -9.2069 39 1 2.9024 1.7137 -7.7721 40 1 0.7883 -0.4274 -7.9802 41 1 0.8787 0.9682 -6.8694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000629004995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:20 Heat of formation + Delta-G solvation = -98.995735 kcal Electronic energy + Delta-G solvation = -20635.285540 eV Core-core repulsion = 17514.289083 eV Total energy + Delta-G solvation = -3120.996457 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65063 -38.66317 -37.51379 -33.91132 -33.68006 -31.91683 -30.51375 -29.08228 -27.49323 -25.78929 -25.09194 -22.74677 -21.51900 -20.91114 -19.56628 -18.34663 -16.83834 -16.52279 -16.04756 -15.66461 -15.38108 -14.92173 -14.63881 -14.33735 -13.88500 -13.72793 -13.65122 -12.86536 -12.74754 -12.65886 -12.55541 -12.12267 -11.97760 -11.44245 -11.37890 -11.31899 -11.07448 -10.97710 -10.94457 -10.75980 -10.71229 -10.65874 -10.22257 -9.95881 -9.58786 -8.95320 -8.63208 -8.51718 -8.30463 -5.99896 -4.03390 1.80781 3.38204 3.40546 3.44711 3.54415 3.71629 4.08958 4.15909 4.31451 4.50137 4.57958 4.95014 4.98972 5.09476 5.16067 5.26298 5.32864 5.36648 5.50366 5.50986 5.52100 5.59382 5.61824 5.69021 5.79089 5.85639 5.97300 6.04340 6.08513 6.25564 6.67945 6.88156 6.94707 7.00648 7.35141 7.51436 7.79401 8.01244 8.17169 8.45765 9.04914 9.21754 9.61770 11.07727 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.003690 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.380291 B = 7586.341927 C = 7836.257626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.743 5.743 15 C 0.070 3.930 16 C 0.362 3.638 17 O -0.444 6.444 18 C -0.110 4.110 19 C -0.137 4.137 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.121 4.121 24 H 0.093 0.907 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.405 0.595 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -1.750 -21.479 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.540 4.540 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.423 6.423 14 N -0.400 5.400 15 C -0.055 4.055 16 C 0.237 3.763 17 O -0.316 6.316 18 C -0.111 4.111 19 C -0.194 4.194 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.112 0.888 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.241 0.759 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.928 -1.828 -21.172 21.338 hybrid contribution 0.052 -0.131 0.735 0.748 sum 1.979 -1.959 -20.438 20.627 Atomic orbital electron populations 1.21746 0.96469 0.99802 1.01060 1.18870 0.94237 0.96891 0.89096 0.92899 1.21104 1.31094 1.12843 0.88984 0.90804 1.24961 0.95128 0.95073 0.99109 1.69871 1.37035 1.23051 1.23627 0.86495 0.79254 0.79691 0.81615 1.21392 1.20203 1.20198 1.22037 0.78319 0.84235 0.84250 1.90521 1.38089 1.26932 1.86782 1.46198 1.55887 1.33215 1.04695 1.21514 1.01081 0.97954 0.84948 1.24789 0.76391 0.83106 0.92062 1.90351 1.29356 1.23305 1.88614 1.21753 0.97739 0.97790 0.93809 1.21891 1.01501 0.93089 1.02950 1.22448 0.92461 1.02592 0.97410 1.22498 0.98696 0.99027 0.95771 1.22358 0.95139 0.98894 0.99794 1.22266 0.98135 0.99482 0.95908 0.88798 0.96799 0.95019 0.92903 0.75897 0.88673 0.88623 0.92081 0.91263 0.91425 0.91068 0.90230 0.91260 0.91292 0.91559 0.91552 0.91230 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.03 0.77 2.64 -92.93 -0.25 0.53 16 3 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.46 8.37 -34.44 -0.29 -14.75 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 12.19 7.15 -10.99 -0.08 12.11 16 13 O -0.55 -14.22 15.46 5.56 0.09 -14.13 16 14 N -0.74 -13.83 5.42 -61.48 -0.33 -14.16 16 15 C 0.07 1.03 5.57 -5.20 -0.03 1.00 16 16 C 0.36 4.63 5.90 -29.04 -0.17 4.46 16 17 O -0.44 -6.84 14.52 6.00 0.09 -6.75 16 18 C -0.11 -1.04 0.78 -154.54 -0.12 -1.16 16 19 C -0.14 -1.10 7.93 37.16 0.29 -0.80 16 20 C -0.11 -0.93 5.56 -25.03 -0.14 -1.07 16 21 C -0.12 -0.87 6.91 -24.70 -0.17 -1.04 16 22 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 23 C -0.12 -1.12 6.05 -25.61 -0.16 -1.27 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.40 7.26 6.86 -40.82 -0.28 6.98 16 29 H 0.10 1.34 7.97 -51.93 -0.41 0.92 16 30 H 0.10 1.35 7.39 -51.93 -0.38 0.97 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.53 7.29 -51.93 -0.38 0.15 16 34 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 35 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.56 7.67 -51.93 -0.40 0.17 16 41 H 0.08 0.96 6.40 -51.93 -0.33 0.62 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -31.90 328.53 -7.22 -39.13 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.58 Total: 3.38 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.04 Total: -4.45 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.29 Total: -39.13 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.17 Total: -20.89 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.90 -7.22 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629004995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.870 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds