Wall clock time and date at job start Mon Mar 30 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47447 * 180.02562 * 15 14 12 17 17 O 1.20763 * 119.99706 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00471 * 180.02562 * 16 15 14 19 19 C 1.53003 * 110.01528 * 59.29780 * 18 16 15 20 20 C 1.54269 * 110.03366 * 297.90793 * 18 16 15 21 21 C 1.54958 * 104.16349 * 217.13225 * 20 18 16 22 22 C 1.54894 * 102.77630 * 37.88956 * 21 20 18 23 23 C 1.53873 * 110.03618 * 180.69041 * 18 16 15 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 29 29 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 30 30 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 31 31 H 1.08995 * 109.46878 * 60.70413 * 19 18 16 32 32 H 1.09005 * 109.46988 * 180.70451 * 19 18 16 33 33 H 1.08993 * 109.46951 * 300.70124 * 19 18 16 34 34 H 1.08999 * 110.48703 * 335.78598 * 20 18 16 35 35 H 1.09002 * 110.48211 * 98.42369 * 20 18 16 36 36 H 1.08997 * 110.72520 * 279.57782 * 21 20 18 37 37 H 1.09001 * 110.92539 * 156.29243 * 21 20 18 38 38 H 1.08996 * 110.48927 * 203.40534 * 22 21 20 39 39 H 1.09003 * 110.48869 * 80.75927 * 22 21 20 40 40 H 1.09000 * 110.03272 * 238.56934 * 23 18 16 41 41 H 1.09003 * 110.03262 * 359.95528 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6936 -0.2292 -4.8812 17 8 0.9996 0.7529 -4.7703 18 6 2.0576 -0.7439 -6.2500 19 6 1.5593 -2.1806 -6.4188 20 6 3.5868 -0.6885 -6.4459 21 6 3.7643 -0.2865 -7.9319 22 6 2.6179 0.7319 -8.1506 23 6 1.4416 0.1584 -7.3335 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 1.1493 0.5391 -2.5436 29 1 3.2855 -0.9395 -3.6507 30 1 1.8325 -1.9678 -3.6511 31 1 0.4745 -2.2034 -6.3155 32 1 1.8380 -2.5482 -7.4065 33 1 2.0104 -2.8138 -5.6549 34 1 4.0282 0.0635 -5.7920 35 1 4.0310 -1.6662 -6.2588 36 1 3.6415 -1.1520 -8.5830 37 1 4.7344 0.1831 -8.0949 38 1 2.3559 0.7904 -9.2069 39 1 2.9024 1.7137 -7.7721 40 1 0.7883 -0.4274 -7.9802 41 1 0.8787 0.9682 -6.8694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000629004995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:20 Heat of formation + Delta-G solvation = -118.793650 kcal Electronic energy + Delta-G solvation = -20636.144042 eV Core-core repulsion = 17514.289083 eV Total energy + Delta-G solvation = -3121.854959 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69315 -40.35648 -38.43473 -35.81988 -35.44150 -32.87983 -32.33674 -29.82364 -28.73549 -27.21189 -26.50163 -24.46361 -22.66699 -21.55243 -21.25599 -19.38117 -18.42673 -18.10269 -17.50228 -16.82615 -16.72452 -16.49125 -16.06186 -15.62529 -15.24159 -14.92687 -14.55112 -14.45332 -14.22794 -13.77489 -13.46914 -13.30736 -13.26207 -12.97571 -12.73807 -12.70489 -12.61238 -12.22620 -12.01979 -11.99798 -11.96521 -11.73260 -11.61033 -11.39263 -11.07669 -10.72796 -10.56938 -10.33430 -10.12025 -8.15350 -6.26884 0.76732 1.41989 1.44005 1.52396 1.84935 2.17796 2.46483 2.87276 3.14140 3.45379 3.62988 3.84261 4.18009 4.26217 4.29577 4.34542 4.41050 4.48787 4.51162 4.58603 4.70912 4.76569 4.90552 4.91567 4.96014 4.97796 5.01439 5.09584 5.16412 5.23485 5.32851 5.34630 5.45400 5.46748 5.47120 5.71730 5.90150 6.17009 6.30330 6.62404 6.82733 7.35809 7.46040 8.90700 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.042198 B = 0.003690 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.380291 B = 7586.341927 C = 7836.257626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.022 3.978 3 H 0.038 0.962 4 C -0.530 4.530 5 H 0.054 0.946 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.525 3.475 13 O -0.578 6.578 14 N -0.729 5.729 15 C 0.063 3.937 16 C 0.370 3.630 17 O -0.474 6.474 18 C -0.104 4.104 19 C -0.137 4.137 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.122 4.122 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.026 0.974 27 H 0.265 0.735 28 H 0.409 0.591 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 -2.594 -23.002 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.001 3.999 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.200 1.200 12 C 0.315 3.685 13 O -0.457 6.457 14 N -0.384 5.384 15 C -0.061 4.061 16 C 0.247 3.753 17 O -0.348 6.348 18 C -0.105 4.105 19 C -0.194 4.194 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.162 4.162 23 C -0.159 4.159 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.246 0.754 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.262 -2.653 -22.737 23.003 hybrid contribution -0.068 0.178 1.157 1.172 sum 2.194 -2.475 -21.580 21.832 Atomic orbital electron populations 1.21557 0.95241 0.99517 1.01445 1.18819 0.95278 0.95963 0.89814 0.94397 1.21262 1.31806 1.12889 0.90874 0.92823 1.25669 0.95132 0.95737 1.01643 1.69963 1.37192 1.23664 1.24438 0.85580 0.78712 0.78706 0.78464 1.20071 1.19928 1.19980 1.21493 0.78192 0.83744 0.85115 1.90498 1.39610 1.28213 1.87399 1.45945 1.54822 1.32972 1.04705 1.21837 1.01789 0.98420 0.84088 1.25053 0.75273 0.82208 0.92804 1.90355 1.30827 1.24579 1.89022 1.21788 0.98770 0.98702 0.91230 1.21932 1.01272 0.91757 1.04402 1.22516 0.91255 1.03126 0.98285 1.22500 0.98637 0.99348 0.94894 1.22368 0.94927 0.98537 1.00350 1.22281 0.98688 0.98897 0.96030 0.90930 0.93784 0.95486 0.92569 0.75428 0.87715 0.87515 0.92450 0.89031 0.91157 0.92295 0.88769 0.89601 0.90568 0.90064 0.92703 0.89793 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.87 71.98 0.64 -5.10 16 2 C 0.02 1.17 2.64 -12.29 -0.03 1.14 16 3 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.53 -31.14 8.37 25.60 0.21 -30.93 16 5 H 0.05 3.31 6.75 -2.91 -0.02 3.29 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -52.40 11.32 21.45 0.24 -52.16 16 8 Si 0.96 45.23 29.54 68.60 2.03 47.25 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 12 C 0.53 24.75 7.15 87.66 0.63 25.38 16 13 O -0.58 -30.36 15.46 -3.03 -0.05 -30.41 16 14 N -0.73 -26.92 5.42 -466.80 -2.53 -29.45 16 15 C 0.06 1.78 5.57 85.63 0.48 2.26 16 16 C 0.37 9.13 5.90 29.10 0.17 9.30 16 17 O -0.47 -14.47 14.52 -1.46 -0.02 -14.49 16 18 C -0.10 -1.78 0.78 -52.20 -0.04 -1.82 16 19 C -0.14 -1.82 7.93 71.98 0.57 -1.25 16 20 C -0.11 -1.65 5.56 31.69 0.18 -1.47 16 21 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 22 C -0.12 -1.71 6.83 31.67 0.22 -1.49 16 23 C -0.12 -2.05 6.05 31.32 0.19 -1.86 16 24 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 25 H 0.04 1.79 7.57 -2.38 -0.02 1.77 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 28 H 0.41 14.53 6.86 -92.70 -0.64 13.90 16 29 H 0.11 2.83 7.97 -2.39 -0.02 2.81 16 30 H 0.11 2.86 7.39 -2.39 -0.02 2.84 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.07 0.91 7.29 -2.39 -0.02 0.89 16 34 H 0.06 1.00 7.85 -2.39 -0.02 0.98 16 35 H 0.09 1.09 7.84 -2.39 -0.02 1.07 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 41 H 0.06 1.34 6.40 -2.39 -0.02 1.33 16 Total: -1.00 -68.84 328.53 3.93 -64.91 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.38 Total: 19.86 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 3.88 Total: -5.51 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.29 Total: -81.61 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: -0.07 Total: -44.90 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -68.84 3.93 -64.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000629004995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.884 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds