Wall clock time and date at job start Mon Mar 30 2020 04:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.27563 * 2 1 4 4 C 1.54945 * 110.39392 * 237.85358 * 2 1 3 5 5 C 1.55312 * 100.94220 * 204.59737 * 4 2 1 6 6 H 1.09004 * 111.01982 * 275.86176 * 5 4 2 7 7 C 1.50700 * 110.84680 * 152.32212 * 5 4 2 8 8 O 1.21283 * 119.99920 * 247.16671 * 7 5 4 9 9 N 1.34777 * 119.99858 * 67.16872 * 7 5 4 10 10 C 1.46505 * 119.99848 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.46900 * 269.99930 * 10 9 7 12 12 H 1.07997 * 120.00368 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99997 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00407 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99780 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47082 * 89.99931 * 15 13 11 17 17 H 1.48497 * 109.47498 * 209.99822 * 15 13 11 18 18 H 1.48505 * 109.47296 * 330.00348 * 15 13 11 19 19 C 1.46501 * 120.00266 * 359.97438 * 9 7 5 20 20 C 1.53001 * 117.51946 * 171.28413 * 19 9 7 21 21 C 1.52999 * 60.00190 * 107.47992 * 20 19 9 22 22 C 1.54380 * 102.25136 * 34.13529 * 5 4 2 23 23 H 1.08999 * 109.83394 * 98.15948 * 22 5 4 24 24 C 1.53003 * 109.82609 * 219.04000 * 22 5 4 25 25 O 1.43233 * 107.58879 * 338.64065 * 22 5 4 26 26 H 1.08997 * 109.47240 * 299.36040 * 1 2 3 27 27 H 1.09000 * 109.46929 * 59.36373 * 1 2 3 28 28 H 1.08998 * 109.47079 * 179.36357 * 1 2 3 29 29 H 1.09000 * 111.12650 * 86.68033 * 4 2 1 30 30 H 1.09002 * 111.12814 * 322.51456 * 4 2 1 31 31 H 1.08995 * 109.47167 * 30.00154 * 10 9 7 32 32 H 1.09000 * 109.46852 * 149.99839 * 10 9 7 33 33 H 0.96998 * 119.99958 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.54982 * 25.58209 * 19 9 7 35 35 H 1.09001 * 117.49733 * 214.97423 * 20 19 9 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.51638 * 107.47550 * 21 20 19 39 39 H 1.08996 * 109.47165 * 59.99901 * 24 22 5 40 40 H 1.08999 * 109.47005 * 179.97438 * 24 22 5 41 41 H 1.09003 * 109.47324 * 299.99962 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4722 -1.2001 -0.7168 6 1 4.2014 -0.4031 -0.8625 7 6 3.9262 -2.4690 -1.3913 8 8 4.0403 -3.4905 -0.7476 9 7 4.2054 -2.4685 -2.7099 10 6 4.6472 -3.7019 -3.3655 11 6 6.1502 -3.7928 -3.3040 12 1 6.7194 -3.0104 -2.8242 13 6 6.7987 -4.8754 -3.8594 14 7 8.1103 -4.9550 -3.8054 15 14 5.8142 -6.2292 -4.6887 16 1 5.6450 -5.9071 -6.1284 17 1 6.5349 -7.5203 -4.5517 18 1 4.4801 -6.3362 -4.0453 19 6 4.0670 -1.2347 -3.4875 20 6 4.5897 -1.2430 -4.9254 21 6 3.0831 -1.2447 -4.6592 22 6 3.2125 -1.4395 0.7860 23 1 3.0650 -2.5035 0.9710 24 6 4.4000 -0.9301 1.6054 25 8 2.0286 -0.7158 1.1413 26 1 -0.3633 0.5038 0.8956 27 1 -0.3633 0.5237 -0.8842 28 1 -0.3633 -1.0276 -0.0114 29 1 2.1516 -0.1202 -2.0989 30 1 1.4506 -1.6422 -1.4503 31 1 4.2101 -4.5608 -2.8562 32 1 4.3259 -3.6949 -4.4070 33 1 8.5665 -5.7169 -4.1958 34 1 4.1660 -0.3085 -2.9213 35 1 5.0327 -0.3223 -5.3052 36 1 5.0371 -2.1664 -5.2929 37 1 2.5390 -2.1694 -4.8516 38 1 2.5345 -0.3252 -4.8636 39 1 4.5325 0.1372 1.4284 40 1 4.2104 -1.1014 2.6651 41 1 5.3028 -1.4628 1.3067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686468194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:47 Heat of formation + Delta-G solvation = -56.634263 kcal Electronic energy + Delta-G solvation = -21582.541419 eV Core-core repulsion = 18463.381893 eV Total energy + Delta-G solvation = -3119.159526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37715 -38.59057 -36.86999 -33.32175 -32.70279 -32.53201 -31.90133 -29.09580 -27.87285 -24.66371 -22.91460 -22.33276 -22.07104 -21.24964 -20.50710 -18.16923 -17.57418 -16.91371 -16.43444 -15.61756 -15.18202 -14.75731 -14.35624 -14.21623 -14.01088 -13.51471 -13.20279 -12.92993 -12.77023 -12.60069 -12.35121 -11.92958 -11.83349 -11.80256 -11.56601 -11.24063 -11.13024 -10.89955 -10.86572 -10.76161 -10.64505 -10.49454 -10.23450 -10.01873 -9.55523 -9.44101 -9.00651 -8.62773 -7.66911 -6.11910 -4.10649 3.13725 3.22806 3.31499 3.35777 3.57910 3.76625 4.22763 4.35978 4.50055 4.64816 4.77650 5.01378 5.07939 5.13179 5.17808 5.21841 5.29236 5.30003 5.34037 5.51485 5.52646 5.62822 5.69305 5.80999 5.85132 5.92208 5.98097 6.05425 6.11371 6.28304 6.30719 6.37803 6.52594 6.65006 6.91582 7.13860 7.24754 7.55967 8.15815 8.42937 8.84374 8.93347 9.47923 11.01364 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.005970 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.532936 B = 4689.242258 C = 5227.493288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.069 0.931 4 C -0.137 4.137 5 C -0.140 4.140 6 H 0.105 0.895 7 C 0.524 3.476 8 O -0.533 6.533 9 N -0.562 5.562 10 C 0.214 3.786 11 C -0.524 4.524 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.870 3.130 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.076 3.924 20 C -0.173 4.173 21 C -0.203 4.203 22 C 0.090 3.910 23 H 0.101 0.899 24 C -0.158 4.158 25 O -0.377 6.377 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.265 0.735 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 12.265 2.268 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.087 0.913 4 C -0.175 4.175 5 C -0.162 4.162 6 H 0.123 0.877 7 C 0.311 3.689 8 O -0.410 6.410 9 N -0.291 5.291 10 C 0.094 3.906 11 C -0.563 4.563 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.697 3.303 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.030 4.030 20 C -0.211 4.211 21 C -0.242 4.242 22 C 0.032 3.968 23 H 0.119 0.881 24 C -0.216 4.216 25 O -0.297 6.297 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.871 11.562 2.766 17.521 hybrid contribution -0.045 -0.667 -0.850 1.081 sum -12.916 10.895 1.916 17.006 Atomic orbital electron populations 1.21874 0.93822 1.02873 1.02148 1.22916 0.94772 0.95404 0.85026 0.91309 1.23322 0.94426 1.01171 0.98555 1.22884 0.98817 0.98116 0.96354 0.87684 1.19810 0.77762 0.89333 0.82009 1.90676 1.52933 1.34221 1.63174 1.47371 1.64114 1.10156 1.07436 1.19697 0.96499 0.82123 0.92313 1.21264 0.89284 1.08022 1.37718 0.90675 1.24834 0.94756 0.97533 0.95743 1.69887 1.07417 1.30733 1.45346 0.86931 0.81002 0.82314 0.80036 1.20061 1.20843 1.18912 1.21524 1.04272 0.88959 0.88203 1.23345 0.95405 1.04737 0.97579 1.23430 0.93433 1.02977 1.04382 1.22639 0.85167 0.97754 0.91240 0.88111 1.22105 0.97752 1.01129 1.00592 1.88426 1.42343 1.64998 1.33899 0.91977 0.91328 0.91886 0.89209 0.89895 0.94079 0.95561 0.92535 0.86408 0.88600 0.86574 0.88863 0.88754 0.92628 0.91923 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.63 37.16 0.36 -1.05 16 2 C 0.08 0.87 4.07 -25.71 -0.10 0.76 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.14 -1.64 5.24 -24.48 -0.13 -1.77 16 5 C -0.14 -2.09 1.93 -89.82 -0.17 -2.27 16 6 H 0.11 1.41 7.13 -51.93 -0.37 1.04 16 7 C 0.52 10.52 7.04 -10.99 -0.08 10.44 16 8 O -0.53 -12.93 15.00 5.56 0.08 -12.85 16 9 N -0.56 -11.28 2.79 -167.46 -0.47 -11.75 16 10 C 0.21 5.12 3.53 -5.19 -0.02 5.11 16 11 C -0.52 -14.74 9.74 -34.44 -0.34 -15.07 16 12 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 15 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 19 C 0.08 1.18 4.83 -67.93 -0.33 0.85 16 20 C -0.17 -2.64 9.72 -26.73 -0.26 -2.90 16 21 C -0.20 -2.65 10.12 -26.73 -0.27 -2.92 16 22 C 0.09 1.37 3.61 -26.01 -0.09 1.28 16 23 H 0.10 1.80 6.78 -51.93 -0.35 1.45 16 24 C -0.16 -2.18 9.44 37.16 0.35 -1.83 16 25 O -0.38 -5.45 10.70 -35.23 -0.38 -5.83 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.88 7.05 -51.93 -0.37 0.51 16 30 H 0.08 1.09 7.95 -51.93 -0.41 0.67 16 31 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 32 H 0.03 0.60 5.75 -51.93 -0.30 0.30 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 1.51 6.25 -51.93 -0.32 1.19 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.12 2.15 6.29 -51.93 -0.33 1.83 16 37 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -32.70 326.49 -7.52 -40.22 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.60 Total: 2.55 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.18 Total: -7.36 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.31 Total: -38.26 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.29 Total: -18.68 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.70 -7.52 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686468194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.415 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds