Wall clock time and date at job start Mon Mar 30 2020 04:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 110.27563 * 2 1 4 4 C 1.54945 * 110.39392 * 237.85358 * 2 1 3 5 5 C 1.55312 * 100.94220 * 204.59737 * 4 2 1 6 6 H 1.09004 * 111.01982 * 275.86176 * 5 4 2 7 7 C 1.50700 * 110.84680 * 152.32212 * 5 4 2 8 8 O 1.21283 * 119.99920 * 247.16671 * 7 5 4 9 9 N 1.34777 * 119.99858 * 67.16872 * 7 5 4 10 10 C 1.46505 * 119.99848 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.46900 * 269.99930 * 10 9 7 12 12 H 1.07997 * 120.00368 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99997 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00407 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 119.99780 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47082 * 89.99931 * 15 13 11 17 17 H 1.48497 * 109.47498 * 209.99822 * 15 13 11 18 18 H 1.48505 * 109.47296 * 330.00348 * 15 13 11 19 19 C 1.46501 * 120.00266 * 359.97438 * 9 7 5 20 20 C 1.53001 * 117.51946 * 171.28413 * 19 9 7 21 21 C 1.52999 * 60.00190 * 107.47992 * 20 19 9 22 22 C 1.54380 * 102.25136 * 34.13529 * 5 4 2 23 23 H 1.08999 * 109.83394 * 98.15948 * 22 5 4 24 24 C 1.53003 * 109.82609 * 219.04000 * 22 5 4 25 25 O 1.43233 * 107.58879 * 338.64065 * 22 5 4 26 26 H 1.08997 * 109.47240 * 299.36040 * 1 2 3 27 27 H 1.09000 * 109.46929 * 59.36373 * 1 2 3 28 28 H 1.08998 * 109.47079 * 179.36357 * 1 2 3 29 29 H 1.09000 * 111.12650 * 86.68033 * 4 2 1 30 30 H 1.09002 * 111.12814 * 322.51456 * 4 2 1 31 31 H 1.08995 * 109.47167 * 30.00154 * 10 9 7 32 32 H 1.09000 * 109.46852 * 149.99839 * 10 9 7 33 33 H 0.96998 * 119.99958 * 179.97438 * 14 13 11 34 34 H 1.09002 * 115.54982 * 25.58209 * 19 9 7 35 35 H 1.09001 * 117.49733 * 214.97423 * 20 19 9 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.51638 * 107.47550 * 21 20 19 39 39 H 1.08996 * 109.47165 * 59.99901 * 24 22 5 40 40 H 1.08999 * 109.47005 * 179.97438 * 24 22 5 41 41 H 1.09003 * 109.47324 * 299.99962 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4722 -1.2001 -0.7168 6 1 4.2014 -0.4031 -0.8625 7 6 3.9262 -2.4690 -1.3913 8 8 4.0403 -3.4905 -0.7476 9 7 4.2054 -2.4685 -2.7099 10 6 4.6472 -3.7019 -3.3655 11 6 6.1502 -3.7928 -3.3040 12 1 6.7194 -3.0104 -2.8242 13 6 6.7987 -4.8754 -3.8594 14 7 8.1103 -4.9550 -3.8054 15 14 5.8142 -6.2292 -4.6887 16 1 5.6450 -5.9071 -6.1284 17 1 6.5349 -7.5203 -4.5517 18 1 4.4801 -6.3362 -4.0453 19 6 4.0670 -1.2347 -3.4875 20 6 4.5897 -1.2430 -4.9254 21 6 3.0831 -1.2447 -4.6592 22 6 3.2125 -1.4395 0.7860 23 1 3.0650 -2.5035 0.9710 24 6 4.4000 -0.9301 1.6054 25 8 2.0286 -0.7158 1.1413 26 1 -0.3633 0.5038 0.8956 27 1 -0.3633 0.5237 -0.8842 28 1 -0.3633 -1.0276 -0.0114 29 1 2.1516 -0.1202 -2.0989 30 1 1.4506 -1.6422 -1.4503 31 1 4.2101 -4.5608 -2.8562 32 1 4.3259 -3.6949 -4.4070 33 1 8.5665 -5.7169 -4.1958 34 1 4.1660 -0.3085 -2.9213 35 1 5.0327 -0.3223 -5.3052 36 1 5.0371 -2.1664 -5.2929 37 1 2.5390 -2.1694 -4.8516 38 1 2.5345 -0.3252 -4.8636 39 1 4.5325 0.1372 1.4284 40 1 4.2104 -1.1014 2.6651 41 1 5.3028 -1.4628 1.3067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686468194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:46 Heat of formation + Delta-G solvation = -78.674472 kcal Electronic energy + Delta-G solvation = -21583.497154 eV Core-core repulsion = 18463.381893 eV Total energy + Delta-G solvation = -3120.115261 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.68249 -39.88551 -38.29241 -35.23421 -34.03347 -33.66744 -33.43210 -30.50513 -29.37859 -25.88156 -24.64464 -23.61064 -23.17210 -22.42021 -21.71228 -19.60481 -19.15168 -18.80069 -17.55702 -17.11483 -16.59584 -16.36204 -15.76512 -15.47330 -15.32700 -14.71766 -14.65875 -14.52969 -13.92468 -13.75617 -13.66504 -13.50791 -13.26054 -12.90341 -12.73619 -12.65526 -12.50771 -12.40105 -12.18670 -12.08605 -11.89255 -11.81858 -11.71628 -11.56916 -11.38768 -10.84566 -10.69235 -10.40188 -9.26790 -8.35967 -6.40101 1.26854 1.31848 1.41610 1.62704 2.09875 2.27403 2.72605 2.97443 3.06402 3.39372 3.52024 3.69769 3.88972 3.98015 4.05239 4.12120 4.21204 4.25681 4.39142 4.47484 4.57922 4.64005 4.67629 4.78408 4.84959 4.88506 4.90496 4.94435 5.01252 5.10643 5.20779 5.21738 5.24698 5.35871 5.38522 5.41946 5.56093 6.10838 6.21057 6.60099 6.63552 7.18033 7.32795 8.80911 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.005970 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.532936 B = 4689.242258 C = 5227.493288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.095 0.905 4 C -0.127 4.127 5 C -0.130 4.130 6 H 0.128 0.872 7 C 0.513 3.487 8 O -0.590 6.590 9 N -0.568 5.568 10 C 0.226 3.774 11 C -0.525 4.525 12 H 0.030 0.970 13 C 0.015 3.985 14 N -0.942 5.942 15 Si 0.939 3.061 16 H -0.250 1.250 17 H -0.281 1.281 18 H -0.260 1.260 19 C 0.052 3.948 20 C -0.190 4.190 21 C -0.167 4.167 22 C 0.090 3.910 23 H 0.064 0.936 24 C -0.154 4.154 25 O -0.390 6.390 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.124 0.876 30 H 0.068 0.932 31 H 0.015 0.985 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.152 0.848 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 14.784 0.869 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.113 0.887 4 C -0.165 4.165 5 C -0.151 4.151 6 H 0.146 0.854 7 C 0.303 3.697 8 O -0.471 6.471 9 N -0.296 5.296 10 C 0.104 3.896 11 C -0.564 4.564 12 H 0.048 0.952 13 C -0.183 4.183 14 N -0.583 5.583 15 Si 0.762 3.238 16 H -0.174 1.174 17 H -0.206 1.206 18 H -0.184 1.184 19 C -0.052 4.052 20 C -0.227 4.227 21 C -0.205 4.205 22 C 0.032 3.968 23 H 0.082 0.918 24 C -0.211 4.211 25 O -0.310 6.310 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.169 0.831 35 H 0.140 0.860 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.159 0.841 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.395 14.136 1.340 20.944 hybrid contribution 0.766 -1.392 -0.377 1.633 sum -14.629 12.744 0.963 19.425 Atomic orbital electron populations 1.21899 0.92343 1.02510 1.03734 1.23239 0.95993 0.95978 0.83377 0.88709 1.23368 0.91693 1.01302 1.00150 1.22851 1.01143 0.95573 0.95567 0.85439 1.20766 0.76680 0.90499 0.81792 1.90641 1.55308 1.36757 1.64428 1.47417 1.63567 1.10636 1.08029 1.19274 0.93429 0.83669 0.93254 1.21418 0.91387 1.06836 1.36761 0.95213 1.25758 0.95775 1.00247 0.96554 1.70036 1.09372 1.31920 1.46935 0.85838 0.79275 0.78632 0.80038 1.17397 1.20642 1.18415 1.22050 1.06689 0.87927 0.88510 1.23344 0.97766 1.04154 0.97466 1.23511 0.91954 1.04665 1.00401 1.22443 0.86187 0.96174 0.91955 0.91844 1.22050 0.96206 1.02184 1.00687 1.88419 1.41868 1.65231 1.35526 0.91541 0.88580 0.93286 0.85764 0.91352 0.96719 0.93596 0.92286 0.83074 0.85964 0.90568 0.89910 0.84109 0.90257 0.91379 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.63 71.98 0.69 -1.59 16 2 C 0.07 1.36 4.07 31.26 0.13 1.49 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.13 -2.64 5.24 32.05 0.17 -2.48 16 5 C -0.13 -3.71 1.93 -10.28 -0.02 -3.73 16 6 H 0.13 3.07 7.13 -2.39 -0.02 3.05 16 7 C 0.51 21.00 7.04 87.66 0.62 21.62 16 8 O -0.59 -30.33 15.00 -3.04 -0.05 -30.37 16 9 N -0.57 -22.84 2.79 -802.12 -2.24 -25.08 16 10 C 0.23 11.06 3.53 85.63 0.30 11.36 16 11 C -0.53 -30.81 9.74 25.60 0.25 -30.57 16 12 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 13 C 0.01 0.88 5.47 84.66 0.46 1.34 16 14 N -0.94 -59.51 13.96 21.45 0.30 -59.21 16 15 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 16 H -0.25 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 18 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 19 C 0.05 1.47 4.83 44.99 0.22 1.69 16 20 C -0.19 -5.38 9.72 30.59 0.30 -5.08 16 21 C -0.17 -3.65 10.12 30.60 0.31 -3.34 16 22 C 0.09 2.77 3.61 31.06 0.11 2.88 16 23 H 0.06 2.41 6.78 -2.39 -0.02 2.40 16 24 C -0.15 -4.20 9.44 71.98 0.68 -3.52 16 25 O -0.39 -10.69 10.70 -148.98 -1.59 -12.29 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.12 1.72 7.05 -2.39 -0.02 1.70 16 30 H 0.07 1.65 7.95 -2.39 -0.02 1.63 16 31 H 0.01 0.80 6.48 -2.39 -0.02 0.78 16 32 H 0.05 2.07 5.75 -2.39 -0.01 2.05 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.15 3.22 6.25 -2.39 -0.01 3.20 16 35 H 0.12 2.76 8.14 -2.39 -0.02 2.75 16 36 H 0.08 2.81 6.29 -2.39 -0.02 2.79 16 37 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 38 H 0.14 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -77.49 326.49 3.47 -74.03 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.95 Total: 16.33 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 4.22 Total: -9.92 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -1.94 Total: -84.30 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.64 Total: -42.66 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -77.49 3.47 -74.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686468194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.648 kcal (2) G-P(sol) polarization free energy of solvation -77.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds