Wall clock time and date at job start Mon Mar 30 2020 04:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87004 * 2 1 4 4 C 1.54106 * 109.87837 * 238.99750 * 2 1 3 5 5 C 1.54807 * 104.18688 * 238.54392 * 4 2 1 6 6 H 1.09005 * 110.90346 * 97.31858 * 5 4 2 7 7 C 1.50703 * 110.90909 * 220.91968 * 5 4 2 8 8 O 1.21272 * 119.99956 * 118.54717 * 7 5 4 9 9 N 1.34776 * 119.99878 * 298.54688 * 7 5 4 10 10 C 1.46500 * 120.00117 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.46594 * 90.00113 * 10 9 7 12 12 H 1.08001 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99740 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99936 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46794 * 90.00503 * 15 13 11 17 17 H 1.48501 * 109.47200 * 209.99938 * 15 13 11 18 18 H 1.48497 * 109.47580 * 330.00708 * 15 13 11 19 19 C 1.46506 * 119.99891 * 0.02562 * 9 7 5 20 20 C 1.52997 * 117.49546 * 188.62113 * 19 9 7 21 21 C 1.53001 * 117.49776 * 119.99799 * 19 9 7 22 22 C 1.54994 * 102.09494 * 339.12124 * 5 4 2 23 23 H 1.09005 * 110.75004 * 278.45899 * 22 5 4 24 24 C 1.52994 * 110.62185 * 155.52387 * 22 5 4 25 25 O 1.43739 * 109.88223 * 121.16497 * 2 1 3 26 26 H 1.09001 * 109.46744 * 181.00335 * 1 2 3 27 27 H 1.08996 * 109.46890 * 301.00311 * 1 2 3 28 28 H 1.09002 * 109.47291 * 61.00305 * 1 2 3 29 29 H 1.08997 * 110.48714 * 357.22053 * 4 2 1 30 30 H 1.09000 * 110.48945 * 119.86925 * 4 2 1 31 31 H 1.08998 * 109.47418 * 210.00253 * 10 9 7 32 32 H 1.08998 * 109.46693 * 330.00885 * 10 9 7 33 33 H 0.97001 * 119.99871 * 179.97438 * 14 13 11 34 34 H 1.09003 * 115.54832 * 334.32363 * 19 9 7 35 35 H 1.08999 * 117.50194 * 359.97438 * 20 19 9 36 36 H 1.09003 * 117.50343 * 145.02103 * 20 19 9 37 37 H 1.09000 * 117.49321 * 214.97337 * 21 19 9 38 38 H 1.08994 * 117.50312 * 359.97438 * 21 19 9 39 39 H 1.09003 * 109.46986 * 304.47410 * 24 22 5 40 40 H 1.09009 * 109.47290 * 64.47267 * 24 22 5 41 41 H 1.08996 * 109.47465 * 184.47466 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 -1.2422 5 6 2.9196 -1.8905 -0.6603 6 1 2.3539 -2.8211 -0.6139 7 6 4.1827 -2.0705 -1.4623 8 8 5.2634 -1.9120 -0.9352 9 7 4.1114 -2.4075 -2.7653 10 6 5.3393 -2.5820 -3.5451 11 6 5.7898 -4.0175 -3.4582 12 1 5.2183 -4.7287 -2.8803 13 6 6.9314 -4.4227 -4.1164 14 7 7.3243 -5.6756 -4.0410 15 14 7.9194 -3.1927 -5.1165 16 1 8.9440 -2.5583 -4.2486 17 1 8.5890 -3.8934 -6.2416 18 1 7.0109 -2.1483 -5.6542 19 6 2.8059 -2.5984 -3.4021 20 6 2.7888 -3.1739 -4.8196 21 6 2.4606 -1.6973 -4.5895 22 6 3.2380 -1.3652 0.7627 23 1 4.0691 -0.6604 0.7373 24 6 3.5476 -2.5268 1.7091 25 8 2.0189 -0.6995 1.1566 26 1 -0.3633 -1.0275 0.0180 27 1 -0.3633 0.5293 0.8808 28 1 -0.3634 0.4982 -0.8988 29 1 1.2247 -1.1523 -1.8214 30 1 2.6620 -0.0833 -1.8576 31 1 5.1482 -2.3235 -4.5866 32 1 6.1182 -1.9320 -3.1464 33 1 8.1273 -5.9608 -4.5045 34 1 1.9936 -2.8829 -2.7332 35 1 3.7489 -3.4102 -5.2785 36 1 1.9652 -3.8373 -5.0836 37 1 1.4211 -1.3894 -4.7019 38 1 3.2045 -0.9623 -4.8966 39 1 2.7169 -3.2326 1.7018 40 1 4.4560 -3.0314 1.3800 41 1 3.6903 -2.1441 2.7196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686468195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:49 Heat of formation + Delta-G solvation = -56.106273 kcal Electronic energy + Delta-G solvation = -21628.575536 eV Core-core repulsion = 18509.438906 eV Total energy + Delta-G solvation = -3119.136630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.36698 -38.56872 -36.86395 -33.31462 -32.74463 -32.48612 -31.89173 -29.10626 -27.83246 -24.62641 -22.86841 -22.28554 -21.98664 -21.13371 -20.80421 -18.37737 -17.38631 -16.87081 -15.94661 -15.82653 -15.12417 -15.08000 -14.36808 -14.13770 -13.96409 -13.61900 -13.40472 -12.90885 -12.59156 -12.45165 -12.18110 -12.00103 -11.86272 -11.77657 -11.59295 -11.23101 -11.10612 -10.91767 -10.80434 -10.71877 -10.62868 -10.47355 -10.21654 -10.04463 -9.59884 -9.52768 -9.01983 -8.62196 -7.65819 -6.11643 -4.10341 3.15481 3.25143 3.30890 3.33453 3.57965 3.82155 4.25702 4.35820 4.55857 4.65091 4.80539 4.92191 5.11646 5.17141 5.19302 5.22649 5.25798 5.32922 5.35666 5.50386 5.54399 5.63438 5.73665 5.86051 5.88879 5.91957 5.99167 6.08613 6.08947 6.23112 6.29740 6.39819 6.54715 6.67431 6.88363 7.00804 7.25650 7.56162 8.16946 8.43347 8.85323 8.93894 9.48195 11.01650 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.006070 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.455443 B = 4611.515186 C = 5263.156706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 H 0.066 0.934 4 C -0.138 4.138 5 C -0.139 4.139 6 H 0.106 0.894 7 C 0.524 3.476 8 O -0.534 6.534 9 N -0.562 5.562 10 C 0.214 3.786 11 C -0.524 4.524 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.873 3.127 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.078 3.922 20 C -0.173 4.173 21 C -0.203 4.203 22 C 0.095 3.905 23 H 0.082 0.918 24 C -0.143 4.143 25 O -0.374 6.374 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.284 10.018 3.349 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.084 0.916 4 C -0.176 4.176 5 C -0.161 4.161 6 H 0.124 0.876 7 C 0.310 3.690 8 O -0.411 6.411 9 N -0.292 5.292 10 C 0.093 3.907 11 C -0.563 4.563 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.192 1.192 19 C -0.028 4.028 20 C -0.211 4.211 21 C -0.242 4.242 22 C 0.037 3.963 23 H 0.100 0.900 24 C -0.200 4.200 25 O -0.294 6.294 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.625 9.963 3.772 17.295 hybrid contribution 0.662 0.386 -0.934 1.208 sum -12.963 10.349 2.838 16.829 Atomic orbital electron populations 1.21927 0.93820 1.02757 1.02123 1.22681 0.94931 0.95771 0.85151 0.91566 1.23045 0.99703 0.96860 0.97994 1.22908 0.96151 1.00708 0.96305 0.87589 1.19883 0.89854 0.77269 0.81963 1.90678 1.29884 1.51182 1.69385 1.47396 1.06208 1.66155 1.09410 1.19691 0.81944 0.98403 0.90623 1.21266 1.10134 0.93033 1.31822 0.90670 1.24836 0.96795 0.95066 0.96184 1.69891 1.24478 1.15693 1.43336 0.86910 0.81145 0.81700 0.80296 1.19887 1.21003 1.19174 1.21529 0.87415 1.04172 0.89725 1.23347 1.04476 0.94981 0.98292 1.23423 1.01814 0.94682 1.04304 1.22906 0.87388 0.94527 0.91432 0.90001 1.21761 1.02594 0.96710 0.98947 1.88866 1.40239 1.67325 1.32931 0.91870 0.92101 0.91374 0.89614 0.90212 0.95110 0.94566 0.92545 0.86370 0.86587 0.88616 0.88772 0.88913 0.92241 0.90100 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.36 37.16 0.35 -1.00 16 2 C 0.07 0.84 4.06 -26.15 -0.11 0.73 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.66 4.85 -25.20 -0.12 -1.78 16 5 C -0.14 -2.10 2.00 -89.76 -0.18 -2.28 16 6 H 0.11 1.50 7.62 -51.93 -0.40 1.11 16 7 C 0.52 10.45 6.97 -10.98 -0.08 10.37 16 8 O -0.53 -12.77 15.28 5.56 0.09 -12.68 16 9 N -0.56 -11.30 2.79 -167.47 -0.47 -11.77 16 10 C 0.21 5.11 3.53 -5.19 -0.02 5.09 16 11 C -0.52 -14.73 9.74 -34.44 -0.34 -15.06 16 12 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 15 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16 16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 19 C 0.08 1.21 4.82 -67.93 -0.33 0.88 16 20 C -0.17 -2.67 9.72 -26.73 -0.26 -2.93 16 21 C -0.20 -2.68 10.13 -26.73 -0.27 -2.95 16 22 C 0.09 1.44 3.02 -25.68 -0.08 1.36 16 23 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16 24 C -0.14 -2.05 9.66 37.15 0.36 -1.69 16 25 O -0.37 -5.31 10.89 -35.23 -0.38 -5.69 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.86 6.77 -51.93 -0.35 0.51 16 30 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 31 H 0.03 0.71 5.38 -51.93 -0.28 0.43 16 32 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.12 1.56 6.11 -51.93 -0.32 1.25 16 35 H 0.12 2.17 6.29 -51.93 -0.33 1.84 16 36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 39 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 40 H 0.08 1.30 8.04 -51.92 -0.42 0.88 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -32.39 326.54 -7.54 -39.93 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.64 Total: 2.41 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.16 Total: -7.24 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.31 Total: -38.28 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.30 Total: -18.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.39 -7.54 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686468195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.172 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds