Wall clock time and date at job start Mon Mar 30 2020 04:53:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09004 * 109.87004 * 2 1
4 4 C 1.54106 * 109.87837 * 238.99750 * 2 1 3
5 5 C 1.54807 * 104.18688 * 238.54392 * 4 2 1
6 6 H 1.09005 * 110.90346 * 97.31858 * 5 4 2
7 7 C 1.50703 * 110.90909 * 220.91968 * 5 4 2
8 8 O 1.21272 * 119.99956 * 118.54717 * 7 5 4
9 9 N 1.34776 * 119.99878 * 298.54688 * 7 5 4
10 10 C 1.46500 * 120.00117 * 179.97438 * 9 7 5
11 11 C 1.50702 * 109.46594 * 90.00113 * 10 9 7
12 12 H 1.08001 * 120.00081 * 0.02562 * 11 10 9
13 13 C 1.37877 * 119.99740 * 180.02562 * 11 10 9
14 14 N 1.31515 * 119.99936 * 180.02562 * 13 11 10
15 15 Si 1.86800 * 119.99948 * 359.97438 * 13 11 10
16 16 H 1.48504 * 109.46794 * 90.00503 * 15 13 11
17 17 H 1.48501 * 109.47200 * 209.99938 * 15 13 11
18 18 H 1.48497 * 109.47580 * 330.00708 * 15 13 11
19 19 C 1.46506 * 119.99891 * 0.02562 * 9 7 5
20 20 C 1.52997 * 117.49546 * 188.62113 * 19 9 7
21 21 C 1.53001 * 117.49776 * 119.99799 * 19 9 7
22 22 C 1.54994 * 102.09494 * 339.12124 * 5 4 2
23 23 H 1.09005 * 110.75004 * 278.45899 * 22 5 4
24 24 C 1.52994 * 110.62185 * 155.52387 * 22 5 4
25 25 O 1.43739 * 109.88223 * 121.16497 * 2 1 3
26 26 H 1.09001 * 109.46744 * 181.00335 * 1 2 3
27 27 H 1.08996 * 109.46890 * 301.00311 * 1 2 3
28 28 H 1.09002 * 109.47291 * 61.00305 * 1 2 3
29 29 H 1.08997 * 110.48714 * 357.22053 * 4 2 1
30 30 H 1.09000 * 110.48945 * 119.86925 * 4 2 1
31 31 H 1.08998 * 109.47418 * 210.00253 * 10 9 7
32 32 H 1.08998 * 109.46693 * 330.00885 * 10 9 7
33 33 H 0.97001 * 119.99871 * 179.97438 * 14 13 11
34 34 H 1.09003 * 115.54832 * 334.32363 * 19 9 7
35 35 H 1.08999 * 117.50194 * 359.97438 * 20 19 9
36 36 H 1.09003 * 117.50343 * 145.02103 * 20 19 9
37 37 H 1.09000 * 117.49321 * 214.97337 * 21 19 9
38 38 H 1.08994 * 117.50312 * 359.97438 * 21 19 9
39 39 H 1.09003 * 109.46986 * 304.47410 * 24 22 5
40 40 H 1.09009 * 109.47290 * 64.47267 * 24 22 5
41 41 H 1.08996 * 109.47465 * 184.47466 * 24 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0540 -0.7465 -1.2422
5 6 2.9196 -1.8905 -0.6603
6 1 2.3539 -2.8211 -0.6139
7 6 4.1827 -2.0705 -1.4623
8 8 5.2634 -1.9120 -0.9352
9 7 4.1114 -2.4075 -2.7653
10 6 5.3393 -2.5820 -3.5451
11 6 5.7898 -4.0175 -3.4582
12 1 5.2183 -4.7287 -2.8803
13 6 6.9314 -4.4227 -4.1164
14 7 7.3243 -5.6756 -4.0410
15 14 7.9194 -3.1927 -5.1165
16 1 8.9440 -2.5583 -4.2486
17 1 8.5890 -3.8934 -6.2416
18 1 7.0109 -2.1483 -5.6542
19 6 2.8059 -2.5984 -3.4021
20 6 2.7888 -3.1739 -4.8196
21 6 2.4606 -1.6973 -4.5895
22 6 3.2380 -1.3652 0.7627
23 1 4.0691 -0.6604 0.7373
24 6 3.5476 -2.5268 1.7091
25 8 2.0189 -0.6995 1.1566
26 1 -0.3633 -1.0275 0.0180
27 1 -0.3633 0.5293 0.8808
28 1 -0.3634 0.4982 -0.8988
29 1 1.2247 -1.1523 -1.8214
30 1 2.6620 -0.0833 -1.8576
31 1 5.1482 -2.3235 -4.5866
32 1 6.1182 -1.9320 -3.1464
33 1 8.1273 -5.9608 -4.5045
34 1 1.9936 -2.8829 -2.7332
35 1 3.7489 -3.4102 -5.2785
36 1 1.9652 -3.8373 -5.0836
37 1 1.4211 -1.3894 -4.7019
38 1 3.2045 -0.9623 -4.8966
39 1 2.7169 -3.2326 1.7018
40 1 4.4560 -3.0314 1.3800
41 1 3.6903 -2.1441 2.7196
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000686468195.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:53:49
Heat of formation + Delta-G solvation = -56.106273 kcal
Electronic energy + Delta-G solvation = -21628.575536 eV
Core-core repulsion = 18509.438906 eV
Total energy + Delta-G solvation = -3119.136630 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-40.36698 -38.56872 -36.86395 -33.31462 -32.74463 -32.48612 -31.89173 -29.10626
-27.83246 -24.62641 -22.86841 -22.28554 -21.98664 -21.13371 -20.80421 -18.37737
-17.38631 -16.87081 -15.94661 -15.82653 -15.12417 -15.08000 -14.36808 -14.13770
-13.96409 -13.61900 -13.40472 -12.90885 -12.59156 -12.45165 -12.18110 -12.00103
-11.86272 -11.77657 -11.59295 -11.23101 -11.10612 -10.91767 -10.80434 -10.71877
-10.62868 -10.47355 -10.21654 -10.04463 -9.59884 -9.52768 -9.01983 -8.62196
-7.65819 -6.11643 -4.10341 3.15481 3.25143 3.30890 3.33453 3.57965
3.82155 4.25702 4.35820 4.55857 4.65091 4.80539 4.92191 5.11646
5.17141 5.19302 5.22649 5.25798 5.32922 5.35666 5.50386 5.54399
5.63438 5.73665 5.86051 5.88879 5.91957 5.99167 6.08613 6.08947
6.23112 6.29740 6.39819 6.54715 6.67431 6.88363 7.00804 7.25650
7.56162 8.16946 8.43347 8.85323 8.93894 9.48195 11.01650
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.023614 B = 0.006070 C = 0.005319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.455443 B = 4611.515186 C = 5263.156706
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.073 3.927
3 H 0.066 0.934
4 C -0.138 4.138
5 C -0.139 4.139
6 H 0.106 0.894
7 C 0.524 3.476
8 O -0.534 6.534
9 N -0.562 5.562
10 C 0.214 3.786
11 C -0.524 4.524
12 H 0.075 0.925
13 C 0.074 3.926
14 N -0.896 5.896
15 Si 0.873 3.127
16 H -0.273 1.273
17 H -0.284 1.284
18 H -0.267 1.267
19 C 0.078 3.922
20 C -0.173 4.173
21 C -0.203 4.203
22 C 0.095 3.905
23 H 0.082 0.918
24 C -0.143 4.143
25 O -0.374 6.374
26 H 0.062 0.938
27 H 0.060 0.940
28 H 0.067 0.933
29 H 0.085 0.915
30 H 0.079 0.921
31 H 0.031 0.969
32 H 0.036 0.964
33 H 0.265 0.735
34 H 0.119 0.881
35 H 0.116 0.884
36 H 0.095 0.905
37 H 0.094 0.906
38 H 0.092 0.908
39 H 0.059 0.941
40 H 0.080 0.920
41 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.284 10.018 3.349 17.766
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.015 3.985
3 H 0.084 0.916
4 C -0.176 4.176
5 C -0.161 4.161
6 H 0.124 0.876
7 C 0.310 3.690
8 O -0.411 6.411
9 N -0.292 5.292
10 C 0.093 3.907
11 C -0.563 4.563
12 H 0.093 0.907
13 C -0.129 4.129
14 N -0.534 5.534
15 Si 0.699 3.301
16 H -0.199 1.199
17 H -0.210 1.210
18 H -0.192 1.192
19 C -0.028 4.028
20 C -0.211 4.211
21 C -0.242 4.242
22 C 0.037 3.963
23 H 0.100 0.900
24 C -0.200 4.200
25 O -0.294 6.294
26 H 0.081 0.919
27 H 0.079 0.921
28 H 0.086 0.914
29 H 0.104 0.896
30 H 0.098 0.902
31 H 0.049 0.951
32 H 0.054 0.946
33 H 0.075 0.925
34 H 0.136 0.864
35 H 0.134 0.866
36 H 0.114 0.886
37 H 0.112 0.888
38 H 0.111 0.889
39 H 0.078 0.922
40 H 0.099 0.901
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -13.625 9.963 3.772 17.295
hybrid contribution 0.662 0.386 -0.934 1.208
sum -12.963 10.349 2.838 16.829
Atomic orbital electron populations
1.21927 0.93820 1.02757 1.02123 1.22681 0.94931 0.95771 0.85151
0.91566 1.23045 0.99703 0.96860 0.97994 1.22908 0.96151 1.00708
0.96305 0.87589 1.19883 0.89854 0.77269 0.81963 1.90678 1.29884
1.51182 1.69385 1.47396 1.06208 1.66155 1.09410 1.19691 0.81944
0.98403 0.90623 1.21266 1.10134 0.93033 1.31822 0.90670 1.24836
0.96795 0.95066 0.96184 1.69891 1.24478 1.15693 1.43336 0.86910
0.81145 0.81700 0.80296 1.19887 1.21003 1.19174 1.21529 0.87415
1.04172 0.89725 1.23347 1.04476 0.94981 0.98292 1.23423 1.01814
0.94682 1.04304 1.22906 0.87388 0.94527 0.91432 0.90001 1.21761
1.02594 0.96710 0.98947 1.88866 1.40239 1.67325 1.32931 0.91870
0.92101 0.91374 0.89614 0.90212 0.95110 0.94566 0.92545 0.86370
0.86587 0.88616 0.88772 0.88913 0.92241 0.90100 0.91983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.35 9.36 37.16 0.35 -1.00 16
2 C 0.07 0.84 4.06 -26.15 -0.11 0.73 16
3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
4 C -0.14 -1.66 4.85 -25.20 -0.12 -1.78 16
5 C -0.14 -2.10 2.00 -89.76 -0.18 -2.28 16
6 H 0.11 1.50 7.62 -51.93 -0.40 1.11 16
7 C 0.52 10.45 6.97 -10.98 -0.08 10.37 16
8 O -0.53 -12.77 15.28 5.56 0.09 -12.68 16
9 N -0.56 -11.30 2.79 -167.47 -0.47 -11.77 16
10 C 0.21 5.11 3.53 -5.19 -0.02 5.09 16
11 C -0.52 -14.73 9.74 -34.44 -0.34 -15.06 16
12 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16
13 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16
14 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16
15 Si 0.87 21.30 27.47 -169.99 -4.67 16.63 16
16 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
18 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16
19 C 0.08 1.21 4.82 -67.93 -0.33 0.88 16
20 C -0.17 -2.67 9.72 -26.73 -0.26 -2.93 16
21 C -0.20 -2.68 10.13 -26.73 -0.27 -2.95 16
22 C 0.09 1.44 3.02 -25.68 -0.08 1.36 16
23 H 0.08 1.36 7.53 -51.93 -0.39 0.97 16
24 C -0.14 -2.05 9.66 37.15 0.36 -1.69 16
25 O -0.37 -5.31 10.89 -35.23 -0.38 -5.69 16
26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
29 H 0.09 0.86 6.77 -51.93 -0.35 0.51 16
30 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16
31 H 0.03 0.71 5.38 -51.93 -0.28 0.43 16
32 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16
33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
34 H 0.12 1.56 6.11 -51.93 -0.32 1.25 16
35 H 0.12 2.17 6.29 -51.93 -0.33 1.84 16
36 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
37 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16
38 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16
39 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16
40 H 0.08 1.30 8.04 -51.92 -0.42 0.88 16
41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
LS Contribution 326.54 15.07 4.92 4.92
Total: -1.00 -32.39 326.54 -7.54 -39.93
By element:
Atomic # 1 Polarization: 9.04 SS G_CDS: -6.64 Total: 2.41 kcal
Atomic # 6 Polarization: -6.08 SS G_CDS: -1.16 Total: -7.24 kcal
Atomic # 7 Polarization: -38.58 SS G_CDS: 0.31 Total: -38.28 kcal
Atomic # 8 Polarization: -18.08 SS G_CDS: -0.30 Total: -18.37 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -32.39 -7.54 -39.93 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686468195.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.172 kcal
(2) G-P(sol) polarization free energy of solvation -32.393 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.564 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds