Wall clock time and date at job start Mon Mar 30 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.87004 * 2 1 4 4 C 1.54106 * 109.87837 * 238.99750 * 2 1 3 5 5 C 1.54807 * 104.18688 * 238.54392 * 4 2 1 6 6 H 1.09005 * 110.90346 * 97.31858 * 5 4 2 7 7 C 1.50703 * 110.90909 * 220.91968 * 5 4 2 8 8 O 1.21272 * 119.99956 * 118.54717 * 7 5 4 9 9 N 1.34776 * 119.99878 * 298.54688 * 7 5 4 10 10 C 1.46500 * 120.00117 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.46594 * 90.00113 * 10 9 7 12 12 H 1.08001 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99740 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99936 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46794 * 90.00503 * 15 13 11 17 17 H 1.48501 * 109.47200 * 209.99938 * 15 13 11 18 18 H 1.48497 * 109.47580 * 330.00708 * 15 13 11 19 19 C 1.46506 * 119.99891 * 0.02562 * 9 7 5 20 20 C 1.52997 * 117.49546 * 188.62113 * 19 9 7 21 21 C 1.53001 * 117.49776 * 119.99799 * 19 9 7 22 22 C 1.54994 * 102.09494 * 339.12124 * 5 4 2 23 23 H 1.09005 * 110.75004 * 278.45899 * 22 5 4 24 24 C 1.52994 * 110.62185 * 155.52387 * 22 5 4 25 25 O 1.43739 * 109.88223 * 121.16497 * 2 1 3 26 26 H 1.09001 * 109.46744 * 181.00335 * 1 2 3 27 27 H 1.08996 * 109.46890 * 301.00311 * 1 2 3 28 28 H 1.09002 * 109.47291 * 61.00305 * 1 2 3 29 29 H 1.08997 * 110.48714 * 357.22053 * 4 2 1 30 30 H 1.09000 * 110.48945 * 119.86925 * 4 2 1 31 31 H 1.08998 * 109.47418 * 210.00253 * 10 9 7 32 32 H 1.08998 * 109.46693 * 330.00885 * 10 9 7 33 33 H 0.97001 * 119.99871 * 179.97438 * 14 13 11 34 34 H 1.09003 * 115.54832 * 334.32363 * 19 9 7 35 35 H 1.08999 * 117.50194 * 359.97438 * 20 19 9 36 36 H 1.09003 * 117.50343 * 145.02103 * 20 19 9 37 37 H 1.09000 * 117.49321 * 214.97337 * 21 19 9 38 38 H 1.08994 * 117.50312 * 359.97438 * 21 19 9 39 39 H 1.09003 * 109.46986 * 304.47410 * 24 22 5 40 40 H 1.09009 * 109.47290 * 64.47267 * 24 22 5 41 41 H 1.08996 * 109.47465 * 184.47466 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0540 -0.7465 -1.2422 5 6 2.9196 -1.8905 -0.6603 6 1 2.3539 -2.8211 -0.6139 7 6 4.1827 -2.0705 -1.4623 8 8 5.2634 -1.9120 -0.9352 9 7 4.1114 -2.4075 -2.7653 10 6 5.3393 -2.5820 -3.5451 11 6 5.7898 -4.0175 -3.4582 12 1 5.2183 -4.7287 -2.8803 13 6 6.9314 -4.4227 -4.1164 14 7 7.3243 -5.6756 -4.0410 15 14 7.9194 -3.1927 -5.1165 16 1 8.9440 -2.5583 -4.2486 17 1 8.5890 -3.8934 -6.2416 18 1 7.0109 -2.1483 -5.6542 19 6 2.8059 -2.5984 -3.4021 20 6 2.7888 -3.1739 -4.8196 21 6 2.4606 -1.6973 -4.5895 22 6 3.2380 -1.3652 0.7627 23 1 4.0691 -0.6604 0.7373 24 6 3.5476 -2.5268 1.7091 25 8 2.0189 -0.6995 1.1566 26 1 -0.3633 -1.0275 0.0180 27 1 -0.3633 0.5293 0.8808 28 1 -0.3634 0.4982 -0.8988 29 1 1.2247 -1.1523 -1.8214 30 1 2.6620 -0.0833 -1.8576 31 1 5.1482 -2.3235 -4.5866 32 1 6.1182 -1.9320 -3.1464 33 1 8.1273 -5.9608 -4.5045 34 1 1.9936 -2.8829 -2.7332 35 1 3.7489 -3.4102 -5.2785 36 1 1.9652 -3.8373 -5.0836 37 1 1.4211 -1.3894 -4.7019 38 1 3.2045 -0.9623 -4.8966 39 1 2.7169 -3.2326 1.7018 40 1 4.4560 -3.0314 1.3800 41 1 3.6903 -2.1441 2.7196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686468195.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:48 Heat of formation + Delta-G solvation = -77.667379 kcal Electronic energy + Delta-G solvation = -21629.510495 eV Core-core repulsion = 18509.438906 eV Total energy + Delta-G solvation = -3120.071590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67414 -39.86245 -38.28803 -35.22886 -34.03581 -33.65324 -33.44030 -30.51307 -29.34462 -25.84145 -24.60973 -23.55106 -23.12331 -22.33851 -21.94766 -19.82176 -19.16175 -18.61562 -17.33622 -17.04754 -16.59169 -16.33097 -15.95909 -15.47183 -15.25312 -14.82833 -14.79175 -14.59930 -13.90152 -13.67934 -13.58142 -13.42582 -13.06021 -12.87074 -12.78811 -12.72948 -12.60402 -12.36385 -12.17996 -12.10867 -11.86987 -11.78597 -11.65899 -11.54436 -11.37177 -10.85039 -10.67858 -10.56404 -9.25704 -8.35369 -6.39549 1.28446 1.32565 1.40041 1.64322 2.11098 2.27563 2.73303 2.98417 3.07545 3.46100 3.58890 3.63682 3.89283 3.94447 4.06605 4.11807 4.18588 4.24412 4.37083 4.47395 4.56222 4.67243 4.68940 4.81577 4.84217 4.87765 4.94136 4.94435 5.01992 5.08517 5.17688 5.20806 5.22088 5.38016 5.38588 5.42267 5.56690 5.96635 6.21742 6.60929 6.64441 7.18589 7.33768 8.81547 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.006070 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.455443 B = 4611.515186 C = 5263.156706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 H 0.070 0.930 4 C -0.128 4.128 5 C -0.130 4.130 6 H 0.120 0.880 7 C 0.514 3.486 8 O -0.587 6.587 9 N -0.569 5.569 10 C 0.225 3.775 11 C -0.525 4.525 12 H 0.029 0.971 13 C 0.014 3.986 14 N -0.943 5.943 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.274 1.274 18 H -0.241 1.241 19 C 0.054 3.946 20 C -0.190 4.190 21 C -0.166 4.166 22 C 0.096 3.904 23 H 0.059 0.941 24 C -0.141 4.141 25 O -0.380 6.380 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.015 0.985 33 H 0.268 0.732 34 H 0.149 0.851 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.132 12.041 2.221 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.166 4.166 5 C -0.152 4.152 6 H 0.138 0.862 7 C 0.304 3.696 8 O -0.468 6.468 9 N -0.298 5.298 10 C 0.103 3.897 11 C -0.564 4.564 12 H 0.047 0.953 13 C -0.184 4.184 14 N -0.583 5.583 15 Si 0.764 3.236 16 H -0.203 1.203 17 H -0.199 1.199 18 H -0.164 1.164 19 C -0.050 4.050 20 C -0.228 4.228 21 C -0.205 4.205 22 C 0.038 3.962 23 H 0.077 0.923 24 C -0.198 4.198 25 O -0.301 6.301 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.095 0.905 36 H 0.139 0.861 37 H 0.158 0.842 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.535 11.999 2.626 20.598 hybrid contribution 1.509 -0.296 -0.531 1.627 sum -15.026 11.703 2.094 19.161 Atomic orbital electron populations 1.21928 0.91350 1.03316 1.03472 1.22937 0.96799 0.95546 0.83933 0.91201 1.23076 0.99802 0.95403 0.98323 1.22854 0.94119 1.02678 0.95519 0.86193 1.20770 0.90942 0.75983 0.81954 1.90643 1.32289 1.53425 1.70432 1.47438 1.06855 1.65866 1.09614 1.19287 0.83526 0.94957 0.91894 1.21424 1.09805 0.94433 1.30704 0.95306 1.25766 0.98024 0.97034 0.97557 1.70040 1.25381 1.17996 1.44913 0.85823 0.79532 0.79605 0.78674 1.20283 1.19879 1.16391 1.22016 0.85898 1.06571 0.90537 1.23347 1.03669 0.97811 0.97939 1.23498 1.04012 0.92668 1.00281 1.22746 0.87412 0.94276 0.91783 0.92272 1.21707 1.01857 0.96768 0.99434 1.88864 1.39391 1.67488 1.34310 0.91626 0.91971 0.88930 0.86471 0.90766 0.93404 0.96684 0.92303 0.83403 0.90500 0.86058 0.84236 0.89856 0.90814 0.92738 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.36 71.98 0.67 -1.33 16 2 C 0.07 1.31 4.06 30.97 0.13 1.44 16 3 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 4 C -0.13 -2.67 4.85 31.59 0.15 -2.51 16 5 C -0.13 -3.77 2.00 -10.24 -0.02 -3.79 16 6 H 0.12 3.15 7.62 -2.38 -0.02 3.13 16 7 C 0.51 20.80 6.97 87.66 0.61 21.41 16 8 O -0.59 -29.41 15.28 -3.01 -0.05 -29.46 16 9 N -0.57 -22.82 2.79 -802.14 -2.24 -25.06 16 10 C 0.23 10.95 3.53 85.63 0.30 11.25 16 11 C -0.53 -30.72 9.74 25.60 0.25 -30.47 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 13 C 0.01 0.85 5.47 84.65 0.46 1.31 16 14 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 15 Si 0.94 44.52 27.47 68.60 1.88 46.41 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16 19 C 0.05 1.55 4.82 44.99 0.22 1.76 16 20 C -0.19 -5.46 9.72 30.59 0.30 -5.17 16 21 C -0.17 -3.70 10.13 30.60 0.31 -3.39 16 22 C 0.10 2.87 3.02 31.27 0.09 2.97 16 23 H 0.06 2.04 7.53 -2.38 -0.02 2.02 16 24 C -0.14 -4.06 9.66 71.98 0.70 -3.36 16 25 O -0.38 -10.11 10.89 -148.98 -1.62 -11.73 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 1.70 6.77 -2.39 -0.02 1.69 16 30 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16 31 H 0.05 2.16 5.38 -2.39 -0.01 2.15 16 32 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.15 3.33 6.11 -2.39 -0.01 3.31 16 35 H 0.08 2.85 6.29 -2.39 -0.02 2.84 16 36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 39 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 40 H 0.05 1.85 8.04 -2.38 -0.02 1.83 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -75.56 326.54 3.39 -72.17 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.95 Total: 16.80 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.17 Total: -9.87 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -1.94 Total: -84.32 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.67 Total: -41.19 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -75.56 3.39 -72.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686468195.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.499 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds