Wall clock time and date at job start Mon Mar 30 2020 04:53:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09004 * 109.87004 * 2 1
4 4 C 1.54106 * 109.87837 * 238.99750 * 2 1 3
5 5 C 1.54807 * 104.18688 * 238.54392 * 4 2 1
6 6 H 1.09005 * 110.90346 * 97.31858 * 5 4 2
7 7 C 1.50703 * 110.90909 * 220.91968 * 5 4 2
8 8 O 1.21272 * 119.99956 * 118.54717 * 7 5 4
9 9 N 1.34776 * 119.99878 * 298.54688 * 7 5 4
10 10 C 1.46500 * 120.00117 * 179.97438 * 9 7 5
11 11 C 1.50702 * 109.46594 * 90.00113 * 10 9 7
12 12 H 1.08001 * 120.00081 * 0.02562 * 11 10 9
13 13 C 1.37877 * 119.99740 * 180.02562 * 11 10 9
14 14 N 1.31515 * 119.99936 * 180.02562 * 13 11 10
15 15 Si 1.86800 * 119.99948 * 359.97438 * 13 11 10
16 16 H 1.48504 * 109.46794 * 90.00503 * 15 13 11
17 17 H 1.48501 * 109.47200 * 209.99938 * 15 13 11
18 18 H 1.48497 * 109.47580 * 330.00708 * 15 13 11
19 19 C 1.46506 * 119.99891 * 0.02562 * 9 7 5
20 20 C 1.52997 * 117.49546 * 188.62113 * 19 9 7
21 21 C 1.53001 * 117.49776 * 119.99799 * 19 9 7
22 22 C 1.54994 * 102.09494 * 339.12124 * 5 4 2
23 23 H 1.09005 * 110.75004 * 278.45899 * 22 5 4
24 24 C 1.52994 * 110.62185 * 155.52387 * 22 5 4
25 25 O 1.43739 * 109.88223 * 121.16497 * 2 1 3
26 26 H 1.09001 * 109.46744 * 181.00335 * 1 2 3
27 27 H 1.08996 * 109.46890 * 301.00311 * 1 2 3
28 28 H 1.09002 * 109.47291 * 61.00305 * 1 2 3
29 29 H 1.08997 * 110.48714 * 357.22053 * 4 2 1
30 30 H 1.09000 * 110.48945 * 119.86925 * 4 2 1
31 31 H 1.08998 * 109.47418 * 210.00253 * 10 9 7
32 32 H 1.08998 * 109.46693 * 330.00885 * 10 9 7
33 33 H 0.97001 * 119.99871 * 179.97438 * 14 13 11
34 34 H 1.09003 * 115.54832 * 334.32363 * 19 9 7
35 35 H 1.08999 * 117.50194 * 359.97438 * 20 19 9
36 36 H 1.09003 * 117.50343 * 145.02103 * 20 19 9
37 37 H 1.09000 * 117.49321 * 214.97337 * 21 19 9
38 38 H 1.08994 * 117.50312 * 359.97438 * 21 19 9
39 39 H 1.09003 * 109.46986 * 304.47410 * 24 22 5
40 40 H 1.09009 * 109.47290 * 64.47267 * 24 22 5
41 41 H 1.08996 * 109.47465 * 184.47466 * 24 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0540 -0.7465 -1.2422
5 6 2.9196 -1.8905 -0.6603
6 1 2.3539 -2.8211 -0.6139
7 6 4.1827 -2.0705 -1.4623
8 8 5.2634 -1.9120 -0.9352
9 7 4.1114 -2.4075 -2.7653
10 6 5.3393 -2.5820 -3.5451
11 6 5.7898 -4.0175 -3.4582
12 1 5.2183 -4.7287 -2.8803
13 6 6.9314 -4.4227 -4.1164
14 7 7.3243 -5.6756 -4.0410
15 14 7.9194 -3.1927 -5.1165
16 1 8.9440 -2.5583 -4.2486
17 1 8.5890 -3.8934 -6.2416
18 1 7.0109 -2.1483 -5.6542
19 6 2.8059 -2.5984 -3.4021
20 6 2.7888 -3.1739 -4.8196
21 6 2.4606 -1.6973 -4.5895
22 6 3.2380 -1.3652 0.7627
23 1 4.0691 -0.6604 0.7373
24 6 3.5476 -2.5268 1.7091
25 8 2.0189 -0.6995 1.1566
26 1 -0.3633 -1.0275 0.0180
27 1 -0.3633 0.5293 0.8808
28 1 -0.3634 0.4982 -0.8988
29 1 1.2247 -1.1523 -1.8214
30 1 2.6620 -0.0833 -1.8576
31 1 5.1482 -2.3235 -4.5866
32 1 6.1182 -1.9320 -3.1464
33 1 8.1273 -5.9608 -4.5045
34 1 1.9936 -2.8829 -2.7332
35 1 3.7489 -3.4102 -5.2785
36 1 1.9652 -3.8373 -5.0836
37 1 1.4211 -1.3894 -4.7019
38 1 3.2045 -0.9623 -4.8966
39 1 2.7169 -3.2326 1.7018
40 1 4.4560 -3.0314 1.3800
41 1 3.6903 -2.1441 2.7196
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000686468195.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:53:48
Heat of formation + Delta-G solvation = -77.667379 kcal
Electronic energy + Delta-G solvation = -21629.510495 eV
Core-core repulsion = 18509.438906 eV
Total energy + Delta-G solvation = -3120.071590 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.67414 -39.86245 -38.28803 -35.22886 -34.03581 -33.65324 -33.44030 -30.51307
-29.34462 -25.84145 -24.60973 -23.55106 -23.12331 -22.33851 -21.94766 -19.82176
-19.16175 -18.61562 -17.33622 -17.04754 -16.59169 -16.33097 -15.95909 -15.47183
-15.25312 -14.82833 -14.79175 -14.59930 -13.90152 -13.67934 -13.58142 -13.42582
-13.06021 -12.87074 -12.78811 -12.72948 -12.60402 -12.36385 -12.17996 -12.10867
-11.86987 -11.78597 -11.65899 -11.54436 -11.37177 -10.85039 -10.67858 -10.56404
-9.25704 -8.35369 -6.39549 1.28446 1.32565 1.40041 1.64322 2.11098
2.27563 2.73303 2.98417 3.07545 3.46100 3.58890 3.63682 3.89283
3.94447 4.06605 4.11807 4.18588 4.24412 4.37083 4.47395 4.56222
4.67243 4.68940 4.81577 4.84217 4.87765 4.94136 4.94435 5.01992
5.08517 5.17688 5.20806 5.22088 5.38016 5.38588 5.42267 5.56690
5.96635 6.21742 6.60929 6.64441 7.18589 7.33768 8.81547
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.023614 B = 0.006070 C = 0.005319
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.455443 B = 4611.515186 C = 5263.156706
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.065 3.935
3 H 0.070 0.930
4 C -0.128 4.128
5 C -0.130 4.130
6 H 0.120 0.880
7 C 0.514 3.486
8 O -0.587 6.587
9 N -0.569 5.569
10 C 0.225 3.775
11 C -0.525 4.525
12 H 0.029 0.971
13 C 0.014 3.986
14 N -0.943 5.943
15 Si 0.941 3.059
16 H -0.277 1.277
17 H -0.274 1.274
18 H -0.241 1.241
19 C 0.054 3.946
20 C -0.190 4.190
21 C -0.166 4.166
22 C 0.096 3.904
23 H 0.059 0.941
24 C -0.141 4.141
25 O -0.380 6.380
26 H 0.065 0.935
27 H 0.061 0.939
28 H 0.092 0.908
29 H 0.117 0.883
30 H 0.074 0.926
31 H 0.048 0.952
32 H 0.015 0.985
33 H 0.268 0.732
34 H 0.149 0.851
35 H 0.076 0.924
36 H 0.121 0.879
37 H 0.140 0.860
38 H 0.083 0.917
39 H 0.073 0.927
40 H 0.054 0.946
41 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.132 12.041 2.221 21.057
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.008 3.992
3 H 0.088 0.912
4 C -0.166 4.166
5 C -0.152 4.152
6 H 0.138 0.862
7 C 0.304 3.696
8 O -0.468 6.468
9 N -0.298 5.298
10 C 0.103 3.897
11 C -0.564 4.564
12 H 0.047 0.953
13 C -0.184 4.184
14 N -0.583 5.583
15 Si 0.764 3.236
16 H -0.203 1.203
17 H -0.199 1.199
18 H -0.164 1.164
19 C -0.050 4.050
20 C -0.228 4.228
21 C -0.205 4.205
22 C 0.038 3.962
23 H 0.077 0.923
24 C -0.198 4.198
25 O -0.301 6.301
26 H 0.084 0.916
27 H 0.080 0.920
28 H 0.111 0.889
29 H 0.135 0.865
30 H 0.092 0.908
31 H 0.066 0.934
32 H 0.033 0.967
33 H 0.077 0.923
34 H 0.166 0.834
35 H 0.095 0.905
36 H 0.139 0.861
37 H 0.158 0.842
38 H 0.101 0.899
39 H 0.092 0.908
40 H 0.073 0.927
41 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -16.535 11.999 2.626 20.598
hybrid contribution 1.509 -0.296 -0.531 1.627
sum -15.026 11.703 2.094 19.161
Atomic orbital electron populations
1.21928 0.91350 1.03316 1.03472 1.22937 0.96799 0.95546 0.83933
0.91201 1.23076 0.99802 0.95403 0.98323 1.22854 0.94119 1.02678
0.95519 0.86193 1.20770 0.90942 0.75983 0.81954 1.90643 1.32289
1.53425 1.70432 1.47438 1.06855 1.65866 1.09614 1.19287 0.83526
0.94957 0.91894 1.21424 1.09805 0.94433 1.30704 0.95306 1.25766
0.98024 0.97034 0.97557 1.70040 1.25381 1.17996 1.44913 0.85823
0.79532 0.79605 0.78674 1.20283 1.19879 1.16391 1.22016 0.85898
1.06571 0.90537 1.23347 1.03669 0.97811 0.97939 1.23498 1.04012
0.92668 1.00281 1.22746 0.87412 0.94276 0.91783 0.92272 1.21707
1.01857 0.96768 0.99434 1.88864 1.39391 1.67488 1.34310 0.91626
0.91971 0.88930 0.86471 0.90766 0.93404 0.96684 0.92303 0.83403
0.90500 0.86058 0.84236 0.89856 0.90814 0.92738 0.90790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.00 9.36 71.98 0.67 -1.33 16
2 C 0.07 1.31 4.06 30.97 0.13 1.44 16
3 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16
4 C -0.13 -2.67 4.85 31.59 0.15 -2.51 16
5 C -0.13 -3.77 2.00 -10.24 -0.02 -3.79 16
6 H 0.12 3.15 7.62 -2.38 -0.02 3.13 16
7 C 0.51 20.80 6.97 87.66 0.61 21.41 16
8 O -0.59 -29.41 15.28 -3.01 -0.05 -29.46 16
9 N -0.57 -22.82 2.79 -802.14 -2.24 -25.06 16
10 C 0.23 10.95 3.53 85.63 0.30 11.25 16
11 C -0.53 -30.72 9.74 25.60 0.25 -30.47 16
12 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16
13 C 0.01 0.85 5.47 84.65 0.46 1.31 16
14 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16
15 Si 0.94 44.52 27.47 68.60 1.88 46.41 16
16 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
18 H -0.24 -10.26 6.54 99.48 0.65 -9.61 16
19 C 0.05 1.55 4.82 44.99 0.22 1.76 16
20 C -0.19 -5.46 9.72 30.59 0.30 -5.17 16
21 C -0.17 -3.70 10.13 30.60 0.31 -3.39 16
22 C 0.10 2.87 3.02 31.27 0.09 2.97 16
23 H 0.06 2.04 7.53 -2.38 -0.02 2.02 16
24 C -0.14 -4.06 9.66 71.98 0.70 -3.36 16
25 O -0.38 -10.11 10.89 -148.98 -1.62 -11.73 16
26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16
28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.12 1.70 6.77 -2.39 -0.02 1.69 16
30 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16
31 H 0.05 2.16 5.38 -2.39 -0.01 2.15 16
32 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16
33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16
34 H 0.15 3.33 6.11 -2.39 -0.01 3.31 16
35 H 0.08 2.85 6.29 -2.39 -0.02 2.84 16
36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16
37 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16
39 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16
40 H 0.05 1.85 8.04 -2.38 -0.02 1.83 16
41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
Total: -1.00 -75.56 326.54 3.39 -72.17
By element:
Atomic # 1 Polarization: 15.85 SS G_CDS: 0.95 Total: 16.80 kcal
Atomic # 6 Polarization: -14.04 SS G_CDS: 4.17 Total: -9.87 kcal
Atomic # 7 Polarization: -82.38 SS G_CDS: -1.94 Total: -84.32 kcal
Atomic # 8 Polarization: -39.52 SS G_CDS: -1.67 Total: -41.19 kcal
Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal
Total: -75.56 3.39 -72.17 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000686468195.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.499 kcal
(2) G-P(sol) polarization free energy of solvation -75.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.060 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.168 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.667 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds