Wall clock time and date at job start Mon Mar 30 2020 04:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.55166 * 2 1 4 4 C 1.54998 * 110.61771 * 237.11584 * 2 1 3 5 5 C 1.54803 * 102.09120 * 204.47638 * 4 2 1 6 6 H 1.08999 * 110.49197 * 262.07622 * 5 4 2 7 7 C 1.50701 * 110.48544 * 139.55676 * 5 4 2 8 8 O 1.21278 * 120.00226 * 328.34488 * 7 5 4 9 9 N 1.34783 * 119.99670 * 148.35013 * 7 5 4 10 10 C 1.47015 * 125.65347 * 359.95484 * 9 7 5 11 11 C 1.54317 * 107.27808 * 181.09742 * 10 9 7 12 12 C 1.55163 * 102.93939 * 22.19291 * 11 10 9 13 13 H 1.09003 * 111.03257 * 82.58968 * 12 11 10 14 14 C 1.50698 * 111.00555 * 206.42460 * 12 11 10 15 15 H 1.08001 * 119.99768 * 112.19530 * 14 12 11 16 16 C 1.37879 * 120.00073 * 292.19504 * 14 12 11 17 17 N 1.31516 * 119.99981 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00098 * 180.27386 * 16 14 12 19 19 H 1.48495 * 109.47457 * 269.72789 * 18 16 14 20 20 H 1.48503 * 109.47090 * 29.72912 * 18 16 14 21 21 H 1.48502 * 109.47391 * 149.72402 * 18 16 14 22 22 C 1.47426 * 125.64417 * 179.97438 * 9 7 5 23 23 C 1.54106 * 104.19216 * 20.88458 * 5 4 2 24 24 H 1.08994 * 109.87843 * 242.60738 * 23 5 4 25 25 C 1.52995 * 109.88340 * 121.44865 * 23 5 4 26 26 O 1.43749 * 107.28765 * 2.02668 * 23 5 4 27 27 H 1.09001 * 109.47655 * 182.88196 * 1 2 3 28 28 H 1.09002 * 109.47152 * 302.88374 * 1 2 3 29 29 H 1.09007 * 109.47066 * 62.87808 * 1 2 3 30 30 H 1.09004 * 110.90261 * 86.27839 * 4 2 1 31 31 H 1.08996 * 110.90825 * 322.67777 * 4 2 1 32 32 H 1.08998 * 109.88396 * 300.52134 * 10 9 7 33 33 H 1.09001 * 109.87792 * 61.52508 * 10 9 7 34 34 H 1.09000 * 110.72396 * 263.83715 * 11 10 9 35 35 H 1.08998 * 110.72260 * 140.55349 * 11 10 9 36 36 H 0.97000 * 120.00285 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.36954 * 36.99832 * 22 9 7 38 38 H 1.08991 * 110.46077 * 274.71900 * 22 9 7 39 39 H 1.08999 * 109.46719 * 56.52068 * 25 23 5 40 40 H 1.09002 * 109.47251 * 176.51683 * 25 23 5 41 41 H 1.09001 * 109.47148 * 296.52392 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4794 -1.2157 -0.7252 6 1 4.2409 -0.5330 -1.1023 7 6 3.7807 -2.6287 -1.1538 8 8 2.8814 -3.4358 -1.2576 9 7 5.0497 -2.9955 -1.4218 10 6 6.2298 -2.1228 -1.3378 11 6 7.4529 -2.9641 -1.7595 12 6 6.8179 -4.1031 -2.6003 13 1 6.6370 -3.7787 -3.6251 14 6 7.6789 -5.3396 -2.5724 15 1 7.3299 -6.2294 -2.0694 16 6 8.9122 -5.3351 -3.1888 17 7 9.3374 -4.2514 -3.8008 18 14 9.9761 -6.8701 -3.1607 19 1 10.8567 -6.8404 -1.9654 20 1 9.1076 -8.0734 -3.1059 21 1 10.8099 -6.9172 -4.3887 22 6 5.4841 -4.3383 -1.8480 23 6 3.3839 -1.1267 0.8103 24 1 4.0853 -0.3801 1.1826 25 6 3.6934 -2.4905 1.4308 26 8 2.0384 -0.7370 1.1327 27 1 -0.3634 -1.0263 0.0517 28 1 -0.3633 0.5580 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1509 -0.1446 -2.0952 31 1 1.4549 -1.6585 -1.4282 32 1 6.1127 -1.2749 -2.0127 33 1 6.3561 -1.7676 -0.3151 34 1 7.9627 -3.3686 -0.8851 35 1 8.1374 -2.3720 -2.3669 36 1 10.2052 -4.2481 -4.2342 37 1 4.7453 -4.7820 -2.5155 38 1 5.6450 -4.9796 -0.9815 39 1 4.6766 -2.8253 1.1003 40 1 3.6847 -2.4056 2.5175 41 1 2.9393 -3.2121 1.1166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686486854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:26 Heat of formation + Delta-G solvation = -92.847751 kcal Electronic energy + Delta-G solvation = -21294.103987 eV Core-core repulsion = 18173.374126 eV Total energy + Delta-G solvation = -3120.729860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57078 -38.61035 -36.67912 -33.24038 -32.75985 -32.34657 -30.24639 -28.92629 -28.42594 -25.48803 -24.11574 -22.75611 -21.49435 -21.17259 -19.77122 -18.34625 -17.21089 -16.74173 -16.23592 -15.77341 -15.32266 -15.00240 -14.58082 -14.32165 -13.87354 -13.30579 -12.91843 -12.78850 -12.58032 -12.32810 -12.22907 -11.98870 -11.95443 -11.77557 -11.53426 -11.28590 -11.06981 -10.98433 -10.95213 -10.85628 -10.72382 -10.50704 -9.88354 -9.79165 -9.51163 -9.26248 -9.03571 -8.51228 -8.04313 -6.14690 -4.18167 2.92883 3.24999 3.32321 3.35317 3.47066 3.69318 4.35701 4.44796 4.61328 4.79975 4.84170 5.03242 5.17407 5.20095 5.27230 5.36006 5.41033 5.49161 5.57919 5.66170 5.70880 5.76246 5.89282 5.94832 5.98883 6.03339 6.13051 6.19600 6.30586 6.35621 6.58426 6.76668 6.89078 6.93935 7.05246 7.39270 7.65915 7.84762 8.07773 8.24466 8.58001 8.84158 9.47168 10.95478 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.046181 B = 0.004094 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.166779 B = 6837.722699 C = 6859.639013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 H 0.069 0.931 4 C -0.138 4.138 5 C -0.143 4.143 6 H 0.099 0.901 7 C 0.537 3.463 8 O -0.550 6.550 9 N -0.611 5.611 10 C 0.094 3.906 11 C -0.113 4.113 12 C 0.046 3.954 13 H 0.042 0.958 14 C -0.515 4.515 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.889 5.889 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.273 1.273 21 H -0.286 1.286 22 C 0.107 3.893 23 C 0.096 3.904 24 H 0.075 0.925 25 C -0.164 4.164 26 O -0.368 6.368 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.262 0.738 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.033 10.352 6.629 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.087 0.913 4 C -0.176 4.176 5 C -0.165 4.165 6 H 0.117 0.883 7 C 0.325 3.675 8 O -0.429 6.429 9 N -0.343 5.343 10 C -0.029 4.029 11 C -0.151 4.151 12 C 0.027 3.973 13 H 0.060 0.940 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.014 4.014 23 C 0.038 3.962 24 H 0.092 0.908 25 C -0.221 4.221 26 O -0.287 6.287 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.531 9.960 6.672 15.957 hybrid contribution 1.024 -0.571 -0.241 1.197 sum -9.507 9.389 6.430 14.829 Atomic orbital electron populations 1.21764 0.93079 1.03233 1.02168 1.23098 0.95347 0.94949 0.85042 0.91278 1.23206 0.94491 1.01627 0.98241 1.22785 1.00024 0.96133 0.97521 0.88251 1.19636 0.81553 0.89146 0.77131 1.90649 1.44782 1.53472 1.54000 1.48772 1.05743 1.14043 1.65715 1.22272 0.87084 0.94014 0.99530 1.22652 0.94201 0.97819 1.00436 1.19845 0.88790 0.94360 0.94305 0.93979 1.20952 1.01579 0.97572 1.35282 0.92197 1.24954 0.97772 0.96209 0.94739 1.69941 1.19916 1.27514 1.35254 0.86555 0.80359 0.83394 0.77499 1.20611 1.19782 1.21195 1.22603 0.98151 0.82075 0.98557 1.22485 0.84949 0.97309 0.91485 0.90757 1.22122 1.02927 0.95818 1.01232 1.88897 1.27683 1.73338 1.38831 0.91496 0.91990 0.91128 0.90051 0.88460 0.92615 0.92891 0.92035 0.90205 0.92847 0.92043 0.92259 0.90782 0.91843 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.65 37.16 0.36 -1.02 16 2 C 0.07 0.82 3.98 -25.67 -0.10 0.72 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.14 -1.73 6.09 -24.73 -0.15 -1.88 16 5 C -0.14 -1.99 3.07 -90.24 -0.28 -2.26 16 6 H 0.10 1.20 7.01 -51.93 -0.36 0.84 16 7 C 0.54 9.61 4.77 -10.98 -0.05 9.56 16 8 O -0.55 -11.58 15.19 5.56 0.08 -11.49 16 9 N -0.61 -11.34 2.96 -170.51 -0.51 -11.84 16 10 C 0.09 1.58 6.12 -3.07 -0.02 1.56 16 11 C -0.11 -2.33 5.90 -24.90 -0.15 -2.48 16 12 C 0.05 1.08 2.85 -89.61 -0.26 0.83 16 13 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.52 -13.42 8.49 -34.44 -0.29 -13.71 16 15 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 16 C 0.07 1.73 5.37 -17.82 -0.10 1.64 16 17 N -0.89 -24.15 12.62 55.43 0.70 -23.45 16 18 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.11 2.28 6.35 -2.51 -0.02 2.26 16 23 C 0.10 1.28 4.05 -26.16 -0.11 1.18 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.16 -2.36 8.41 37.15 0.31 -2.05 16 26 O -0.37 -5.15 10.89 -35.23 -0.38 -5.54 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.43 6.87 -51.93 -0.36 1.08 16 32 H 0.06 0.85 7.79 -51.93 -0.40 0.45 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 35 H 0.08 1.75 7.85 -51.93 -0.41 1.35 16 36 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 38 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 39 H 0.07 1.11 7.14 -51.93 -0.37 0.74 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.07 1.26 7.01 -51.93 -0.36 0.89 16 LS Contribution 324.71 15.07 4.89 4.89 Total: -1.00 -28.98 324.71 -7.94 -36.92 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.86 Total: 0.72 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.84 Total: -5.65 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.19 Total: -35.29 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.30 Total: -17.03 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.98 -7.94 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686486854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.930 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds