Wall clock time and date at job start Mon Mar 30 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.55166 * 2 1 4 4 C 1.54998 * 110.61771 * 237.11584 * 2 1 3 5 5 C 1.54803 * 102.09120 * 204.47638 * 4 2 1 6 6 H 1.08999 * 110.49197 * 262.07622 * 5 4 2 7 7 C 1.50701 * 110.48544 * 139.55676 * 5 4 2 8 8 O 1.21278 * 120.00226 * 328.34488 * 7 5 4 9 9 N 1.34783 * 119.99670 * 148.35013 * 7 5 4 10 10 C 1.47015 * 125.65347 * 359.95484 * 9 7 5 11 11 C 1.54317 * 107.27808 * 181.09742 * 10 9 7 12 12 C 1.55163 * 102.93939 * 22.19291 * 11 10 9 13 13 H 1.09003 * 111.03257 * 82.58968 * 12 11 10 14 14 C 1.50698 * 111.00555 * 206.42460 * 12 11 10 15 15 H 1.08001 * 119.99768 * 112.19530 * 14 12 11 16 16 C 1.37879 * 120.00073 * 292.19504 * 14 12 11 17 17 N 1.31516 * 119.99981 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00098 * 180.27386 * 16 14 12 19 19 H 1.48495 * 109.47457 * 269.72789 * 18 16 14 20 20 H 1.48503 * 109.47090 * 29.72912 * 18 16 14 21 21 H 1.48502 * 109.47391 * 149.72402 * 18 16 14 22 22 C 1.47426 * 125.64417 * 179.97438 * 9 7 5 23 23 C 1.54106 * 104.19216 * 20.88458 * 5 4 2 24 24 H 1.08994 * 109.87843 * 242.60738 * 23 5 4 25 25 C 1.52995 * 109.88340 * 121.44865 * 23 5 4 26 26 O 1.43749 * 107.28765 * 2.02668 * 23 5 4 27 27 H 1.09001 * 109.47655 * 182.88196 * 1 2 3 28 28 H 1.09002 * 109.47152 * 302.88374 * 1 2 3 29 29 H 1.09007 * 109.47066 * 62.87808 * 1 2 3 30 30 H 1.09004 * 110.90261 * 86.27839 * 4 2 1 31 31 H 1.08996 * 110.90825 * 322.67777 * 4 2 1 32 32 H 1.08998 * 109.88396 * 300.52134 * 10 9 7 33 33 H 1.09001 * 109.87792 * 61.52508 * 10 9 7 34 34 H 1.09000 * 110.72396 * 263.83715 * 11 10 9 35 35 H 1.08998 * 110.72260 * 140.55349 * 11 10 9 36 36 H 0.97000 * 120.00285 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.36954 * 36.99832 * 22 9 7 38 38 H 1.08991 * 110.46077 * 274.71900 * 22 9 7 39 39 H 1.08999 * 109.46719 * 56.52068 * 25 23 5 40 40 H 1.09002 * 109.47251 * 176.51683 * 25 23 5 41 41 H 1.09001 * 109.47148 * 296.52392 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2183 5 6 3.4794 -1.2157 -0.7252 6 1 4.2409 -0.5330 -1.1023 7 6 3.7807 -2.6287 -1.1538 8 8 2.8814 -3.4358 -1.2576 9 7 5.0497 -2.9955 -1.4218 10 6 6.2298 -2.1228 -1.3378 11 6 7.4529 -2.9641 -1.7595 12 6 6.8179 -4.1031 -2.6003 13 1 6.6370 -3.7787 -3.6251 14 6 7.6789 -5.3396 -2.5724 15 1 7.3299 -6.2294 -2.0694 16 6 8.9122 -5.3351 -3.1888 17 7 9.3374 -4.2514 -3.8008 18 14 9.9761 -6.8701 -3.1607 19 1 10.8567 -6.8404 -1.9654 20 1 9.1076 -8.0734 -3.1059 21 1 10.8099 -6.9172 -4.3887 22 6 5.4841 -4.3383 -1.8480 23 6 3.3839 -1.1267 0.8103 24 1 4.0853 -0.3801 1.1826 25 6 3.6934 -2.4905 1.4308 26 8 2.0384 -0.7370 1.1327 27 1 -0.3634 -1.0263 0.0517 28 1 -0.3633 0.5580 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1509 -0.1446 -2.0952 31 1 1.4549 -1.6585 -1.4282 32 1 6.1127 -1.2749 -2.0127 33 1 6.3561 -1.7676 -0.3151 34 1 7.9627 -3.3686 -0.8851 35 1 8.1374 -2.3720 -2.3669 36 1 10.2052 -4.2481 -4.2342 37 1 4.7453 -4.7820 -2.5155 38 1 5.6450 -4.9796 -0.9815 39 1 4.6766 -2.8253 1.1003 40 1 3.6847 -2.4056 2.5175 41 1 2.9393 -3.2121 1.1166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686486854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:25 Heat of formation + Delta-G solvation = -110.116563 kcal Electronic energy + Delta-G solvation = -21294.852819 eV Core-core repulsion = 18173.374126 eV Total energy + Delta-G solvation = -3121.478692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79707 -39.90535 -38.25271 -35.01582 -33.89485 -33.44055 -31.92983 -30.11919 -29.82981 -27.19279 -25.39332 -24.16658 -22.66901 -22.19255 -21.54783 -19.75797 -18.58182 -18.34314 -17.50207 -16.85573 -16.74501 -16.55744 -16.28462 -15.58750 -15.09525 -14.50594 -14.35782 -14.27332 -13.86420 -13.64231 -13.53613 -13.22139 -13.20516 -12.97314 -12.90672 -12.88330 -12.69787 -12.57231 -12.30540 -12.03606 -11.91493 -11.78812 -11.63914 -11.34591 -10.97383 -10.90119 -10.55550 -10.51110 -9.57448 -8.17032 -6.26254 1.42684 1.44770 1.53735 1.55418 2.03181 2.43953 2.75756 3.15170 3.35316 3.51809 3.77010 3.92337 4.04056 4.10031 4.21957 4.29877 4.31856 4.35672 4.43811 4.48921 4.52099 4.54667 4.72488 4.77037 4.79190 4.88243 4.92228 5.01988 5.06681 5.15868 5.16987 5.26510 5.30472 5.38033 5.56328 5.76087 5.86181 5.96721 6.26805 6.63721 6.80140 7.14415 7.41704 8.92622 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.046181 B = 0.004094 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.166779 B = 6837.722699 C = 6859.639013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.072 3.928 3 H 0.099 0.901 4 C -0.139 4.139 5 C -0.139 4.139 6 H 0.128 0.872 7 C 0.535 3.465 8 O -0.589 6.589 9 N -0.613 5.613 10 C 0.102 3.898 11 C -0.103 4.103 12 C 0.040 3.960 13 H 0.012 0.988 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.022 3.978 17 N -0.913 5.913 18 Si 0.954 3.046 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.284 1.284 22 C 0.118 3.882 23 C 0.097 3.903 24 H 0.108 0.892 25 C -0.161 4.161 26 O -0.389 6.389 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.263 0.737 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.898 12.473 7.557 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.116 0.884 4 C -0.177 4.177 5 C -0.160 4.160 6 H 0.146 0.854 7 C 0.326 3.674 8 O -0.470 6.470 9 N -0.345 5.345 10 C -0.019 4.019 11 C -0.142 4.142 12 C 0.021 3.979 13 H 0.030 0.970 14 C -0.573 4.573 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.551 5.551 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.197 1.197 21 H -0.209 1.209 22 C -0.004 4.004 23 C 0.039 3.961 24 H 0.125 0.875 25 C -0.219 4.219 26 O -0.309 6.309 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.399 12.100 7.609 17.676 hybrid contribution 0.926 -1.271 -0.556 1.668 sum -9.473 10.830 7.053 16.024 Atomic orbital electron populations 1.21799 0.92219 1.02414 1.03763 1.23341 0.96175 0.95651 0.83291 0.88351 1.23243 0.93199 1.01182 1.00028 1.22890 1.01621 0.93205 0.98287 0.85361 1.20421 0.80447 0.90661 0.75921 1.90635 1.45827 1.55128 1.55441 1.48803 1.06788 1.13052 1.65867 1.22283 0.84234 0.93286 1.02134 1.22414 0.95499 0.97058 0.99219 1.19732 0.89974 0.94773 0.93430 0.97016 1.21255 1.02285 0.98378 1.35403 0.92852 1.25636 0.98853 0.98836 0.94453 1.70032 1.20279 1.29010 1.35812 0.85621 0.78716 0.80070 0.77651 1.19805 1.19742 1.20920 1.22237 0.96658 0.83850 0.97688 1.22604 0.85588 0.97220 0.90713 0.87477 1.22072 1.01340 0.96069 1.02372 1.88882 1.28061 1.73963 1.40005 0.93482 0.90998 0.89003 0.87517 0.91444 0.90173 0.89375 0.92783 0.91626 0.92752 0.93804 0.92814 0.91454 0.90312 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.65 71.98 0.69 -1.74 16 2 C 0.07 1.40 3.98 31.28 0.12 1.53 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.14 -3.15 6.09 31.89 0.19 -2.96 16 5 C -0.14 -3.47 3.07 -10.55 -0.03 -3.50 16 6 H 0.13 2.48 7.01 -2.39 -0.02 2.47 16 7 C 0.54 18.74 4.77 87.66 0.42 19.16 16 8 O -0.59 -25.35 15.19 -3.02 -0.05 -25.40 16 9 N -0.61 -22.30 2.96 -811.77 -2.41 -24.71 16 10 C 0.10 3.20 6.12 86.73 0.53 3.73 16 11 C -0.10 -4.24 5.90 31.78 0.19 -4.05 16 12 C 0.04 1.93 2.85 -10.14 -0.03 1.90 16 13 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 14 C -0.53 -28.45 8.49 25.60 0.22 -28.23 16 15 H 0.05 2.83 7.77 -2.91 -0.02 2.81 16 16 C 0.02 1.18 5.37 84.65 0.45 1.64 16 17 N -0.91 -50.08 12.62 21.45 0.27 -49.81 16 18 Si 0.95 42.15 29.54 68.60 2.03 44.18 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.12 5.15 6.35 86.86 0.55 5.70 16 23 C 0.10 2.30 4.05 30.97 0.13 2.42 16 24 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 25 C -0.16 -4.45 8.41 71.98 0.61 -3.84 16 26 O -0.39 -9.95 10.89 -148.98 -1.62 -11.57 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.07 1.96 6.87 -2.39 -0.02 1.95 16 32 H 0.08 2.16 7.79 -2.39 -0.02 2.14 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 2.26 8.03 -2.39 -0.02 2.25 16 35 H 0.07 2.87 7.85 -2.39 -0.02 2.85 16 36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.04 2.02 8.04 -2.39 -0.02 2.00 16 38 H 0.05 2.37 8.01 -2.39 -0.02 2.35 16 39 H 0.07 1.92 7.14 -2.39 -0.02 1.90 16 40 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.42 7.01 -2.39 -0.02 1.40 16 Total: -1.00 -64.67 324.71 3.26 -61.41 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.99 Total: 14.14 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.04 Total: -8.24 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -2.13 Total: -74.51 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.67 Total: -36.97 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -64.67 3.26 -61.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686486854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.707 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds