Wall clock time and date at job start Mon Mar 30 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46828 * 2 1 4 4 C 1.50696 * 109.46892 * 240.00043 * 2 1 3 5 5 H 1.08003 * 119.99581 * 275.03592 * 4 2 1 6 6 C 1.37877 * 120.00341 * 95.31779 * 4 2 1 7 7 N 1.31512 * 120.00443 * 184.65388 * 6 4 2 8 8 Si 1.86809 * 119.99745 * 4.65004 * 6 4 2 9 9 H 1.48500 * 109.46908 * 85.01966 * 8 6 4 10 10 H 1.48497 * 109.47067 * 205.02164 * 8 6 4 11 11 H 1.48502 * 109.46985 * 325.02111 * 8 6 4 12 12 N 1.46504 * 109.47226 * 119.99785 * 2 1 3 13 13 C 1.46501 * 119.99853 * 59.99953 * 12 2 1 14 14 C 1.34778 * 120.00091 * 240.00159 * 12 2 1 15 15 O 1.21280 * 119.99783 * 359.97438 * 14 12 2 16 16 C 1.50695 * 119.99693 * 180.02562 * 14 12 2 17 17 C 1.51076 * 110.62296 * 68.71174 * 16 14 12 18 18 C 1.54957 * 104.88299 * 83.58888 * 17 16 14 19 19 C 1.56248 * 105.86889 * 6.44466 * 18 17 16 20 20 C 1.50712 * 101.85793 * 24.97701 * 19 18 17 21 21 H 1.08999 * 108.85243 * 68.02062 * 20 19 18 22 22 O 1.39684 * 127.81930 * 201.28112 * 20 19 18 23 23 C 1.46161 * 103.81320 * 161.64468 * 22 20 19 24 24 C 1.51585 * 110.62479 * 288.56137 * 16 14 12 25 25 H 1.09007 * 109.47012 * 293.98863 * 1 2 3 26 26 H 1.08999 * 109.47365 * 53.98136 * 1 2 3 27 27 H 1.09000 * 109.47219 * 173.98687 * 1 2 3 28 28 H 0.96995 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46798 * 89.99795 * 13 12 2 30 30 H 1.08993 * 109.47215 * 210.00167 * 13 12 2 31 31 H 1.08999 * 109.46975 * 330.00198 * 13 12 2 32 32 H 1.09005 * 110.43022 * 201.70421 * 17 16 14 33 33 H 1.09001 * 110.42330 * 324.18420 * 17 16 14 34 34 H 1.08996 * 109.81214 * 247.54123 * 18 17 16 35 35 H 1.09005 * 110.60477 * 125.77142 * 18 17 16 36 36 H 1.08996 * 110.95059 * 266.82942 * 19 18 17 37 37 H 1.08997 * 110.97990 * 143.12945 * 19 18 17 38 38 H 1.08995 * 110.03222 * 91.25875 * 23 22 20 39 39 H 1.08998 * 110.03191 * 212.64693 * 23 22 20 40 40 H 1.08995 * 110.85951 * 33.55761 * 24 16 14 41 41 H 1.08997 * 110.85894 * 157.20533 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1348 -1.7855 -1.2292 6 6 2.3664 0.0126 -2.3559 7 7 2.7170 -0.6120 -3.4588 8 14 2.3209 1.8797 -2.3141 9 1 3.6059 2.3942 -1.7763 10 1 2.1158 2.4007 -3.6895 11 1 1.2047 2.3283 -1.4433 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2960 -0.7461 3.3135 17 6 4.3073 -1.8047 2.9405 18 6 5.6508 -1.0435 2.8111 19 6 5.3623 0.4164 3.2872 20 6 4.1772 0.2171 4.1967 21 1 4.4999 -0.3341 5.0800 22 8 3.2323 1.1665 4.5928 23 6 2.1093 0.3626 5.0714 24 6 2.1632 -0.9865 4.2917 25 1 -0.3633 0.4178 0.9390 26 1 -0.3634 0.6043 -0.8312 27 1 -0.3634 -1.0220 -0.1077 28 1 2.9517 -0.1034 -4.2506 29 1 2.4157 -2.7376 0.9717 30 1 1.6238 -2.2852 2.5002 31 1 0.6904 -2.3001 0.9847 32 1 4.3834 -2.5530 3.7295 33 1 4.0356 -2.2739 1.9949 34 1 5.9759 -1.0422 1.7707 35 1 6.4131 -1.5008 3.4420 36 1 5.1034 1.0572 2.4443 37 1 6.2114 0.8227 3.8367 38 1 2.2101 0.1799 6.1412 39 1 1.1694 0.8752 4.8673 40 1 1.2267 -1.1676 3.7642 41 1 2.3983 -1.8131 4.9622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687408175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:04 Heat of formation + Delta-G solvation = -56.001962 kcal Electronic energy + Delta-G solvation = -22548.316975 eV Core-core repulsion = 19429.184868 eV Total energy + Delta-G solvation = -3119.132107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43076 -38.11000 -35.72673 -35.25798 -32.93227 -31.84612 -30.06644 -27.64803 -27.18603 -26.22456 -25.23069 -22.75140 -22.16732 -20.33067 -19.99752 -18.13572 -17.23195 -16.66088 -15.81936 -15.50676 -15.36319 -15.07153 -14.50759 -14.02350 -13.79829 -13.56679 -12.78230 -12.70346 -12.51776 -12.42367 -12.32585 -12.04407 -11.91112 -11.51432 -11.45950 -11.14346 -11.03983 -10.99633 -10.67527 -10.65077 -10.48982 -10.29146 -10.09262 -9.78974 -9.33824 -9.23875 -8.72264 -8.59299 -7.59651 -6.16008 -4.17720 3.32009 3.38790 3.40231 3.47659 3.48256 3.93626 4.39985 4.59797 4.61672 4.75315 5.00714 5.09259 5.16415 5.26990 5.30952 5.38487 5.45248 5.56640 5.60208 5.74262 5.79621 5.92632 5.97167 5.98778 6.04033 6.05561 6.18944 6.26157 6.36522 6.40293 6.43215 6.60363 6.61950 6.95800 7.07748 7.11908 7.51746 7.68129 8.20069 8.53890 8.85895 9.06060 9.47403 10.95961 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.007332 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.598703 B = 3818.031504 C = 3943.741674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.223 3.777 3 H 0.064 0.936 4 C -0.522 4.522 5 H 0.077 0.923 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.874 3.126 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.264 1.264 12 N -0.589 5.589 13 C 0.081 3.919 14 C 0.526 3.474 15 O -0.538 6.538 16 C -0.139 4.139 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.117 4.117 20 C 0.093 3.907 21 H 0.051 0.949 22 O -0.342 6.342 23 C 0.045 3.955 24 C -0.136 4.136 25 H 0.025 0.975 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.266 0.734 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -3.843 16.098 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.123 3.877 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.095 0.905 6 C -0.124 4.124 7 N -0.530 5.530 8 Si 0.701 3.299 9 H -0.196 1.196 10 H -0.215 1.215 11 H -0.189 1.189 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.312 3.688 15 O -0.415 6.415 16 C -0.142 4.142 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.154 4.154 20 C 0.034 3.966 21 H 0.069 0.931 22 O -0.259 6.259 23 C -0.031 4.031 24 C -0.174 4.174 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.699 -2.974 15.762 16.055 hybrid contribution -0.109 0.499 -0.138 0.529 sum 0.590 -2.475 15.624 15.830 Atomic orbital electron populations 1.22219 0.98555 1.00774 0.99021 1.19288 0.90632 0.94933 0.82867 0.91851 1.21118 1.44431 0.95614 0.94905 0.90522 1.24956 0.93796 0.98437 0.95242 1.69888 1.45231 1.36024 1.01835 0.86901 0.79961 0.86168 0.76856 1.19616 1.21454 1.18880 1.48229 1.49452 1.11475 1.22856 1.21733 1.01271 0.83465 0.99809 1.19816 0.78847 0.86684 0.83421 1.90609 1.57637 1.16892 1.76371 1.22401 0.96644 0.99552 0.95633 1.21574 0.93545 0.96359 1.02810 1.22695 0.96738 0.94002 1.02194 1.22007 0.95104 0.98055 1.00229 1.22298 0.91631 0.87974 0.94728 0.93106 1.88562 1.26312 1.28446 1.82630 1.24033 0.90905 0.90766 0.97406 1.22522 0.99039 0.98194 0.97640 0.95560 0.92681 0.93175 0.92439 0.92958 0.92314 0.91304 0.91015 0.89916 0.90755 0.91384 0.88099 0.91367 0.91796 0.89632 0.89478 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.03 37.16 0.34 -2.79 16 2 C 0.22 5.42 2.30 -69.08 -0.16 5.26 16 3 H 0.06 1.71 4.04 -51.93 -0.21 1.50 16 4 C -0.52 -14.36 8.82 -34.44 -0.30 -14.67 16 5 H 0.08 2.23 7.67 -52.48 -0.40 1.83 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16 8 Si 0.87 22.51 26.99 -169.99 -4.59 17.93 16 9 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.26 -6.62 6.82 56.52 0.39 -6.23 16 12 N -0.59 -12.20 2.75 -175.27 -0.48 -12.68 16 13 C 0.08 1.32 7.99 59.85 0.48 1.80 16 14 C 0.53 10.77 5.53 -10.99 -0.06 10.71 16 15 O -0.54 -13.19 12.93 -11.25 -0.15 -13.34 16 16 C -0.14 -2.12 0.24 -154.82 -0.04 -2.16 16 17 C -0.11 -1.41 5.66 -26.67 -0.15 -1.56 16 18 C -0.12 -1.61 6.84 -23.96 -0.16 -1.77 16 19 C -0.12 -1.82 6.35 -26.13 -0.17 -1.98 16 20 C 0.09 1.44 2.91 -25.35 -0.07 1.36 16 21 H 0.05 0.66 7.99 -51.93 -0.41 0.25 16 22 O -0.34 -5.91 10.58 -48.87 -0.52 -6.43 16 23 C 0.05 0.59 7.58 38.71 0.29 0.88 16 24 C -0.14 -1.67 5.34 -25.89 -0.14 -1.81 16 25 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.05 0.87 7.16 -51.93 -0.37 0.49 16 30 H 0.06 0.76 4.58 -51.93 -0.24 0.52 16 31 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.22 5.88 -51.93 -0.31 0.92 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.97 6.04 -51.93 -0.31 1.65 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.07 6.25 -51.93 -0.32 0.75 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 306.95 15.07 4.63 4.63 Total: -1.00 -33.14 306.95 -6.81 -39.96 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.24 Total: 0.58 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -0.24 Total: -4.54 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.29 Total: -38.78 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.66 Total: -19.77 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.59 Total: 17.93 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.14 -6.81 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687408175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.046 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds