Wall clock time and date at job start Mon Mar 30 2020 05:21:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.46828 * 2 1
4 4 C 1.50696 * 109.46892 * 240.00043 * 2 1 3
5 5 H 1.08003 * 119.99581 * 275.03592 * 4 2 1
6 6 C 1.37877 * 120.00341 * 95.31779 * 4 2 1
7 7 N 1.31512 * 120.00443 * 184.65388 * 6 4 2
8 8 Si 1.86809 * 119.99745 * 4.65004 * 6 4 2
9 9 H 1.48500 * 109.46908 * 85.01966 * 8 6 4
10 10 H 1.48497 * 109.47067 * 205.02164 * 8 6 4
11 11 H 1.48502 * 109.46985 * 325.02111 * 8 6 4
12 12 N 1.46504 * 109.47226 * 119.99785 * 2 1 3
13 13 C 1.46501 * 119.99853 * 59.99953 * 12 2 1
14 14 C 1.34778 * 120.00091 * 240.00159 * 12 2 1
15 15 O 1.21280 * 119.99783 * 359.97438 * 14 12 2
16 16 C 1.50695 * 119.99693 * 180.02562 * 14 12 2
17 17 C 1.51076 * 110.62296 * 68.71174 * 16 14 12
18 18 C 1.54957 * 104.88299 * 83.58888 * 17 16 14
19 19 C 1.56248 * 105.86889 * 6.44466 * 18 17 16
20 20 C 1.50712 * 101.85793 * 24.97701 * 19 18 17
21 21 H 1.08999 * 108.85243 * 68.02062 * 20 19 18
22 22 O 1.39684 * 127.81930 * 201.28112 * 20 19 18
23 23 C 1.46161 * 103.81320 * 161.64468 * 22 20 19
24 24 C 1.51585 * 110.62479 * 288.56137 * 16 14 12
25 25 H 1.09007 * 109.47012 * 293.98863 * 1 2 3
26 26 H 1.08999 * 109.47365 * 53.98136 * 1 2 3
27 27 H 1.09000 * 109.47219 * 173.98687 * 1 2 3
28 28 H 0.96995 * 120.00104 * 179.97438 * 7 6 4
29 29 H 1.09000 * 109.46798 * 89.99795 * 13 12 2
30 30 H 1.08993 * 109.47215 * 210.00167 * 13 12 2
31 31 H 1.08999 * 109.46975 * 330.00198 * 13 12 2
32 32 H 1.09005 * 110.43022 * 201.70421 * 17 16 14
33 33 H 1.09001 * 110.42330 * 324.18420 * 17 16 14
34 34 H 1.08996 * 109.81214 * 247.54123 * 18 17 16
35 35 H 1.09005 * 110.60477 * 125.77142 * 18 17 16
36 36 H 1.08996 * 110.95059 * 266.82942 * 19 18 17
37 37 H 1.08997 * 110.97990 * 143.12945 * 19 18 17
38 38 H 1.08995 * 110.03222 * 91.25875 * 23 22 20
39 39 H 1.08998 * 110.03191 * 212.64693 * 23 22 20
40 40 H 1.08995 * 110.85951 * 33.55761 * 24 16 14
41 41 H 1.08997 * 110.85894 * 157.20533 * 24 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7104 -1.2305
5 1 2.1348 -1.7855 -1.2292
6 6 2.3664 0.0126 -2.3559
7 7 2.7170 -0.6120 -3.4588
8 14 2.3209 1.8797 -2.3141
9 1 3.6059 2.3942 -1.7763
10 1 2.1158 2.4007 -3.6895
11 1 1.2047 2.3283 -1.4433
12 7 2.0183 -0.6906 1.1962
13 6 1.6644 -2.0932 1.4281
14 6 2.7932 -0.0355 2.0834
15 8 3.0865 1.1254 1.8912
16 6 3.2960 -0.7461 3.3135
17 6 4.3073 -1.8047 2.9405
18 6 5.6508 -1.0435 2.8111
19 6 5.3623 0.4164 3.2872
20 6 4.1772 0.2171 4.1967
21 1 4.4999 -0.3341 5.0800
22 8 3.2323 1.1665 4.5928
23 6 2.1093 0.3626 5.0714
24 6 2.1632 -0.9865 4.2917
25 1 -0.3633 0.4178 0.9390
26 1 -0.3634 0.6043 -0.8312
27 1 -0.3634 -1.0220 -0.1077
28 1 2.9517 -0.1034 -4.2506
29 1 2.4157 -2.7376 0.9717
30 1 1.6238 -2.2852 2.5002
31 1 0.6904 -2.3001 0.9847
32 1 4.3834 -2.5530 3.7295
33 1 4.0356 -2.2739 1.9949
34 1 5.9759 -1.0422 1.7707
35 1 6.4131 -1.5008 3.4420
36 1 5.1034 1.0572 2.4443
37 1 6.2114 0.8227 3.8367
38 1 2.2101 0.1799 6.1412
39 1 1.1694 0.8752 4.8673
40 1 1.2267 -1.1676 3.7642
41 1 2.3983 -1.8131 4.9622
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000687408175.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:21:04
Heat of formation + Delta-G solvation = -56.001962 kcal
Electronic energy + Delta-G solvation = -22548.316975 eV
Core-core repulsion = 19429.184868 eV
Total energy + Delta-G solvation = -3119.132107 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.43076 -38.11000 -35.72673 -35.25798 -32.93227 -31.84612 -30.06644 -27.64803
-27.18603 -26.22456 -25.23069 -22.75140 -22.16732 -20.33067 -19.99752 -18.13572
-17.23195 -16.66088 -15.81936 -15.50676 -15.36319 -15.07153 -14.50759 -14.02350
-13.79829 -13.56679 -12.78230 -12.70346 -12.51776 -12.42367 -12.32585 -12.04407
-11.91112 -11.51432 -11.45950 -11.14346 -11.03983 -10.99633 -10.67527 -10.65077
-10.48982 -10.29146 -10.09262 -9.78974 -9.33824 -9.23875 -8.72264 -8.59299
-7.59651 -6.16008 -4.17720 3.32009 3.38790 3.40231 3.47659 3.48256
3.93626 4.39985 4.59797 4.61672 4.75315 5.00714 5.09259 5.16415
5.26990 5.30952 5.38487 5.45248 5.56640 5.60208 5.74262 5.79621
5.92632 5.97167 5.98778 6.04033 6.05561 6.18944 6.26157 6.36522
6.40293 6.43215 6.60363 6.61950 6.95800 7.07748 7.11908 7.51746
7.68129 8.20069 8.53890 8.85895 9.06060 9.47403 10.95961
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.023124 B = 0.007332 C = 0.007098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1210.598703 B = 3818.031504 C = 3943.741674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.223 3.777
3 H 0.064 0.936
4 C -0.522 4.522
5 H 0.077 0.923
6 C 0.079 3.921
7 N -0.893 5.893
8 Si 0.874 3.126
9 H -0.271 1.271
10 H -0.288 1.288
11 H -0.264 1.264
12 N -0.589 5.589
13 C 0.081 3.919
14 C 0.526 3.474
15 O -0.538 6.538
16 C -0.139 4.139
17 C -0.105 4.105
18 C -0.119 4.119
19 C -0.117 4.117
20 C 0.093 3.907
21 H 0.051 0.949
22 O -0.342 6.342
23 C 0.045 3.955
24 C -0.136 4.136
25 H 0.025 0.975
26 H 0.054 0.946
27 H 0.049 0.951
28 H 0.266 0.734
29 H 0.052 0.948
30 H 0.058 0.942
31 H 0.068 0.932
32 H 0.071 0.929
33 H 0.082 0.918
34 H 0.074 0.926
35 H 0.067 0.933
36 H 0.101 0.899
37 H 0.068 0.932
38 H 0.064 0.936
39 H 0.085 0.915
40 H 0.087 0.913
41 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.488 -3.843 16.098 16.558
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.123 3.877
3 H 0.081 0.919
4 C -0.561 4.561
5 H 0.095 0.905
6 C -0.124 4.124
7 N -0.530 5.530
8 Si 0.701 3.299
9 H -0.196 1.196
10 H -0.215 1.215
11 H -0.189 1.189
12 N -0.320 5.320
13 C -0.063 4.063
14 C 0.312 3.688
15 O -0.415 6.415
16 C -0.142 4.142
17 C -0.143 4.143
18 C -0.156 4.156
19 C -0.154 4.154
20 C 0.034 3.966
21 H 0.069 0.931
22 O -0.259 6.259
23 C -0.031 4.031
24 C -0.174 4.174
25 H 0.044 0.956
26 H 0.073 0.927
27 H 0.068 0.932
28 H 0.076 0.924
29 H 0.070 0.930
30 H 0.077 0.923
31 H 0.087 0.913
32 H 0.090 0.910
33 H 0.101 0.899
34 H 0.092 0.908
35 H 0.086 0.914
36 H 0.119 0.881
37 H 0.086 0.914
38 H 0.082 0.918
39 H 0.104 0.896
40 H 0.105 0.895
41 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 0.699 -2.974 15.762 16.055
hybrid contribution -0.109 0.499 -0.138 0.529
sum 0.590 -2.475 15.624 15.830
Atomic orbital electron populations
1.22219 0.98555 1.00774 0.99021 1.19288 0.90632 0.94933 0.82867
0.91851 1.21118 1.44431 0.95614 0.94905 0.90522 1.24956 0.93796
0.98437 0.95242 1.69888 1.45231 1.36024 1.01835 0.86901 0.79961
0.86168 0.76856 1.19616 1.21454 1.18880 1.48229 1.49452 1.11475
1.22856 1.21733 1.01271 0.83465 0.99809 1.19816 0.78847 0.86684
0.83421 1.90609 1.57637 1.16892 1.76371 1.22401 0.96644 0.99552
0.95633 1.21574 0.93545 0.96359 1.02810 1.22695 0.96738 0.94002
1.02194 1.22007 0.95104 0.98055 1.00229 1.22298 0.91631 0.87974
0.94728 0.93106 1.88562 1.26312 1.28446 1.82630 1.24033 0.90905
0.90766 0.97406 1.22522 0.99039 0.98194 0.97640 0.95560 0.92681
0.93175 0.92439 0.92958 0.92314 0.91304 0.91015 0.89916 0.90755
0.91384 0.88099 0.91367 0.91796 0.89632 0.89478 0.89854
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.12 9.03 37.16 0.34 -2.79 16
2 C 0.22 5.42 2.30 -69.08 -0.16 5.26 16
3 H 0.06 1.71 4.04 -51.93 -0.21 1.50 16
4 C -0.52 -14.36 8.82 -34.44 -0.30 -14.67 16
5 H 0.08 2.23 7.67 -52.48 -0.40 1.83 16
6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16
7 N -0.89 -26.87 13.96 55.43 0.77 -26.10 16
8 Si 0.87 22.51 26.99 -169.99 -4.59 17.93 16
9 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16
10 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
11 H -0.26 -6.62 6.82 56.52 0.39 -6.23 16
12 N -0.59 -12.20 2.75 -175.27 -0.48 -12.68 16
13 C 0.08 1.32 7.99 59.85 0.48 1.80 16
14 C 0.53 10.77 5.53 -10.99 -0.06 10.71 16
15 O -0.54 -13.19 12.93 -11.25 -0.15 -13.34 16
16 C -0.14 -2.12 0.24 -154.82 -0.04 -2.16 16
17 C -0.11 -1.41 5.66 -26.67 -0.15 -1.56 16
18 C -0.12 -1.61 6.84 -23.96 -0.16 -1.77 16
19 C -0.12 -1.82 6.35 -26.13 -0.17 -1.98 16
20 C 0.09 1.44 2.91 -25.35 -0.07 1.36 16
21 H 0.05 0.66 7.99 -51.93 -0.41 0.25 16
22 O -0.34 -5.91 10.58 -48.87 -0.52 -6.43 16
23 C 0.05 0.59 7.58 38.71 0.29 0.88 16
24 C -0.14 -1.67 5.34 -25.89 -0.14 -1.81 16
25 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16
26 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16
27 H 0.05 0.99 6.92 -51.93 -0.36 0.63 16
28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16
29 H 0.05 0.87 7.16 -51.93 -0.37 0.49 16
30 H 0.06 0.76 4.58 -51.93 -0.24 0.52 16
31 H 0.07 1.10 6.55 -51.93 -0.34 0.76 16
32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.08 1.22 5.88 -51.93 -0.31 0.92 16
34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.10 1.97 6.04 -51.93 -0.31 1.65 16
37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
40 H 0.09 1.07 6.25 -51.93 -0.32 0.75 16
41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
LS Contribution 306.95 15.07 4.63 4.63
Total: -1.00 -33.14 306.95 -6.81 -39.96
By element:
Atomic # 1 Polarization: 6.82 SS G_CDS: -6.24 Total: 0.58 kcal
Atomic # 6 Polarization: -4.29 SS G_CDS: -0.24 Total: -4.54 kcal
Atomic # 7 Polarization: -39.08 SS G_CDS: 0.29 Total: -38.78 kcal
Atomic # 8 Polarization: -19.11 SS G_CDS: -0.66 Total: -19.77 kcal
Atomic # 14 Polarization: 22.51 SS G_CDS: -4.59 Total: 17.93 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -33.14 -6.81 -39.96 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687408175.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.046 kcal
(2) G-P(sol) polarization free energy of solvation -33.143 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.189 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.002 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds