Wall clock time and date at job start Mon Mar 30 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46828 * 2 1 4 4 C 1.50696 * 109.46892 * 240.00043 * 2 1 3 5 5 H 1.08003 * 119.99581 * 275.03592 * 4 2 1 6 6 C 1.37877 * 120.00341 * 95.31779 * 4 2 1 7 7 N 1.31512 * 120.00443 * 184.65388 * 6 4 2 8 8 Si 1.86809 * 119.99745 * 4.65004 * 6 4 2 9 9 H 1.48500 * 109.46908 * 85.01966 * 8 6 4 10 10 H 1.48497 * 109.47067 * 205.02164 * 8 6 4 11 11 H 1.48502 * 109.46985 * 325.02111 * 8 6 4 12 12 N 1.46504 * 109.47226 * 119.99785 * 2 1 3 13 13 C 1.46501 * 119.99853 * 59.99953 * 12 2 1 14 14 C 1.34778 * 120.00091 * 240.00159 * 12 2 1 15 15 O 1.21280 * 119.99783 * 359.97438 * 14 12 2 16 16 C 1.50695 * 119.99693 * 180.02562 * 14 12 2 17 17 C 1.51076 * 110.62296 * 68.71174 * 16 14 12 18 18 C 1.54957 * 104.88299 * 83.58888 * 17 16 14 19 19 C 1.56248 * 105.86889 * 6.44466 * 18 17 16 20 20 C 1.50712 * 101.85793 * 24.97701 * 19 18 17 21 21 H 1.08999 * 108.85243 * 68.02062 * 20 19 18 22 22 O 1.39684 * 127.81930 * 201.28112 * 20 19 18 23 23 C 1.46161 * 103.81320 * 161.64468 * 22 20 19 24 24 C 1.51585 * 110.62479 * 288.56137 * 16 14 12 25 25 H 1.09007 * 109.47012 * 293.98863 * 1 2 3 26 26 H 1.08999 * 109.47365 * 53.98136 * 1 2 3 27 27 H 1.09000 * 109.47219 * 173.98687 * 1 2 3 28 28 H 0.96995 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.46798 * 89.99795 * 13 12 2 30 30 H 1.08993 * 109.47215 * 210.00167 * 13 12 2 31 31 H 1.08999 * 109.46975 * 330.00198 * 13 12 2 32 32 H 1.09005 * 110.43022 * 201.70421 * 17 16 14 33 33 H 1.09001 * 110.42330 * 324.18420 * 17 16 14 34 34 H 1.08996 * 109.81214 * 247.54123 * 18 17 16 35 35 H 1.09005 * 110.60477 * 125.77142 * 18 17 16 36 36 H 1.08996 * 110.95059 * 266.82942 * 19 18 17 37 37 H 1.08997 * 110.97990 * 143.12945 * 19 18 17 38 38 H 1.08995 * 110.03222 * 91.25875 * 23 22 20 39 39 H 1.08998 * 110.03191 * 212.64693 * 23 22 20 40 40 H 1.08995 * 110.85951 * 33.55761 * 24 16 14 41 41 H 1.08997 * 110.85894 * 157.20533 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1348 -1.7855 -1.2292 6 6 2.3664 0.0126 -2.3559 7 7 2.7170 -0.6120 -3.4588 8 14 2.3209 1.8797 -2.3141 9 1 3.6059 2.3942 -1.7763 10 1 2.1158 2.4007 -3.6895 11 1 1.2047 2.3283 -1.4433 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0355 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2960 -0.7461 3.3135 17 6 4.3073 -1.8047 2.9405 18 6 5.6508 -1.0435 2.8111 19 6 5.3623 0.4164 3.2872 20 6 4.1772 0.2171 4.1967 21 1 4.4999 -0.3341 5.0800 22 8 3.2323 1.1665 4.5928 23 6 2.1093 0.3626 5.0714 24 6 2.1632 -0.9865 4.2917 25 1 -0.3633 0.4178 0.9390 26 1 -0.3634 0.6043 -0.8312 27 1 -0.3634 -1.0220 -0.1077 28 1 2.9517 -0.1034 -4.2506 29 1 2.4157 -2.7376 0.9717 30 1 1.6238 -2.2852 2.5002 31 1 0.6904 -2.3001 0.9847 32 1 4.3834 -2.5530 3.7295 33 1 4.0356 -2.2739 1.9949 34 1 5.9759 -1.0422 1.7707 35 1 6.4131 -1.5008 3.4420 36 1 5.1034 1.0572 2.4443 37 1 6.2114 0.8227 3.8367 38 1 2.2101 0.1799 6.1412 39 1 1.1694 0.8752 4.8673 40 1 1.2267 -1.1676 3.7642 41 1 2.3983 -1.8131 4.9622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687408175.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:04 Heat of formation + Delta-G solvation = -78.367796 kcal Electronic energy + Delta-G solvation = -22549.286831 eV Core-core repulsion = 19429.184868 eV Total energy + Delta-G solvation = -3120.101962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.65960 -39.61876 -37.13576 -36.74744 -34.82540 -33.30500 -31.70320 -28.75333 -28.29388 -27.68443 -27.25288 -24.26287 -23.15474 -21.73174 -21.33946 -19.68373 -19.10905 -18.13053 -17.45223 -16.67871 -16.56013 -16.40282 -16.30062 -15.32474 -15.16193 -15.01373 -14.61219 -14.25227 -14.08730 -13.94989 -13.57618 -13.35551 -13.32886 -13.08965 -12.92816 -12.62578 -12.59571 -12.32513 -12.29792 -12.09723 -11.87003 -11.71866 -11.44233 -11.30875 -11.18812 -10.82355 -10.42706 -10.28058 -9.28940 -8.40367 -6.42650 1.21656 1.28296 1.37091 1.87660 2.21598 2.24471 2.55625 3.02214 3.45392 3.57661 3.70679 3.93370 4.07260 4.14101 4.23570 4.32894 4.38871 4.40605 4.49614 4.60370 4.63825 4.65901 4.72229 4.78855 4.83689 4.90642 4.93883 4.97621 5.00981 5.10935 5.14060 5.16248 5.28014 5.35945 5.43853 5.52318 5.86372 6.03482 6.16112 6.61933 6.82537 7.23091 7.49624 8.75105 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.007332 C = 0.007098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.598703 B = 3818.031504 C = 3943.741674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.222 3.778 3 H 0.033 0.967 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.922 3.078 9 H -0.289 1.289 10 H -0.275 1.275 11 H -0.255 1.255 12 N -0.597 5.597 13 C 0.079 3.921 14 C 0.514 3.486 15 O -0.589 6.589 16 C -0.132 4.132 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.086 3.914 21 H 0.092 0.908 22 O -0.383 6.383 23 C 0.038 3.962 24 C -0.129 4.129 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.268 0.732 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -5.518 19.360 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 H 0.051 0.949 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.168 4.168 7 N -0.572 5.572 8 Si 0.749 3.251 9 H -0.215 1.215 10 H -0.200 1.200 11 H -0.180 1.180 12 N -0.328 5.328 13 C -0.063 4.063 14 C 0.303 3.697 15 O -0.470 6.470 16 C -0.135 4.135 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.163 4.163 20 C 0.027 3.973 21 H 0.109 0.891 22 O -0.302 6.302 23 C -0.038 4.038 24 C -0.167 4.167 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.171 -4.679 19.039 19.607 hybrid contribution 0.086 1.019 -1.105 1.506 sum 0.257 -3.660 17.934 18.306 Atomic orbital electron populations 1.22066 0.95992 1.01846 0.99791 1.19062 0.92505 0.93287 0.83231 0.94876 1.21346 1.43141 0.94714 0.96072 0.92735 1.25558 0.94294 1.01683 0.95290 1.69973 1.47388 1.37298 1.02541 0.86132 0.79214 0.82451 0.77338 1.21522 1.20028 1.17958 1.48183 1.49655 1.13146 1.21805 1.21962 1.01063 0.80667 1.02625 1.20890 0.77670 0.86373 0.84735 1.90590 1.59113 1.19491 1.77775 1.22422 0.98126 0.99676 0.93288 1.21644 0.92312 0.96554 1.03544 1.22722 0.98219 0.92980 1.01372 1.22028 0.96637 0.98665 0.98947 1.22498 0.91080 0.87842 0.95831 0.89090 1.88524 1.27920 1.30657 1.83146 1.24288 0.89377 0.90626 0.99491 1.22625 0.97530 0.99260 0.97240 0.93563 0.93455 0.91606 0.92289 0.93523 0.88093 0.91027 0.86208 0.91782 0.93453 0.87464 0.93363 0.89463 0.88169 0.90556 0.89586 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.75 9.03 71.98 0.65 -5.10 16 2 C 0.22 10.86 2.30 44.24 0.10 10.96 16 3 H 0.03 1.84 4.04 -2.39 -0.01 1.83 16 4 C -0.51 -28.95 8.82 25.60 0.23 -28.73 16 5 H 0.05 3.26 7.67 -2.91 -0.02 3.23 16 6 C 0.03 1.85 5.47 84.65 0.46 2.31 16 7 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16 8 Si 0.92 47.99 26.99 68.60 1.85 49.84 16 9 H -0.29 -15.70 7.11 99.48 0.71 -15.00 16 10 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.26 -12.77 6.82 99.48 0.68 -12.10 16 12 N -0.60 -24.52 2.75 -826.81 -2.27 -26.79 16 13 C 0.08 2.42 7.99 127.77 1.02 3.45 16 14 C 0.51 20.98 5.53 87.66 0.48 21.47 16 15 O -0.59 -30.02 12.93 13.04 0.17 -29.85 16 16 C -0.13 -3.65 0.24 -52.38 -0.01 -3.66 16 17 C -0.10 -2.41 5.66 30.64 0.17 -2.24 16 18 C -0.12 -2.90 6.84 32.39 0.22 -2.67 16 19 C -0.13 -3.83 6.35 30.98 0.20 -3.63 16 20 C 0.09 2.44 2.91 31.49 0.09 2.53 16 21 H 0.09 1.87 7.99 -2.39 -0.02 1.85 16 22 O -0.38 -12.68 10.58 -121.57 -1.29 -13.97 16 23 C 0.04 0.85 7.58 72.99 0.55 1.41 16 24 C -0.13 -2.54 5.34 31.14 0.17 -2.37 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 2.49 6.92 -2.39 -0.02 2.48 16 28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 29 H 0.05 1.49 7.16 -2.39 -0.02 1.47 16 30 H 0.10 2.22 4.58 -2.39 -0.01 2.21 16 31 H 0.07 2.15 6.55 -2.39 -0.02 2.13 16 32 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.99 6.04 -2.39 -0.01 1.97 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 1.73 6.25 -2.39 -0.01 1.71 16 41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -77.49 306.95 4.09 -73.40 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.99 Total: 11.07 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.34 Total: -6.29 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -1.97 Total: -84.20 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.12 Total: -43.82 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.85 Total: 49.84 kcal Total: -77.49 4.09 -73.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687408175.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal (2) G-P(sol) polarization free energy of solvation -77.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds