Wall clock time and date at job start Mon Mar 30 2020 05:21:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09003 * 109.46828 * 2 1
4 4 C 1.50696 * 109.46892 * 240.00043 * 2 1 3
5 5 H 1.08003 * 119.99581 * 275.03592 * 4 2 1
6 6 C 1.37877 * 120.00341 * 95.31779 * 4 2 1
7 7 N 1.31512 * 120.00443 * 184.65388 * 6 4 2
8 8 Si 1.86809 * 119.99745 * 4.65004 * 6 4 2
9 9 H 1.48500 * 109.46908 * 85.01966 * 8 6 4
10 10 H 1.48497 * 109.47067 * 205.02164 * 8 6 4
11 11 H 1.48502 * 109.46985 * 325.02111 * 8 6 4
12 12 N 1.46504 * 109.47226 * 119.99785 * 2 1 3
13 13 C 1.46501 * 119.99853 * 59.99953 * 12 2 1
14 14 C 1.34778 * 120.00091 * 240.00159 * 12 2 1
15 15 O 1.21280 * 119.99783 * 359.97438 * 14 12 2
16 16 C 1.50695 * 119.99693 * 180.02562 * 14 12 2
17 17 C 1.51076 * 110.62296 * 68.71174 * 16 14 12
18 18 C 1.54957 * 104.88299 * 83.58888 * 17 16 14
19 19 C 1.56248 * 105.86889 * 6.44466 * 18 17 16
20 20 C 1.50712 * 101.85793 * 24.97701 * 19 18 17
21 21 H 1.08999 * 108.85243 * 68.02062 * 20 19 18
22 22 O 1.39684 * 127.81930 * 201.28112 * 20 19 18
23 23 C 1.46161 * 103.81320 * 161.64468 * 22 20 19
24 24 C 1.51585 * 110.62479 * 288.56137 * 16 14 12
25 25 H 1.09007 * 109.47012 * 293.98863 * 1 2 3
26 26 H 1.08999 * 109.47365 * 53.98136 * 1 2 3
27 27 H 1.09000 * 109.47219 * 173.98687 * 1 2 3
28 28 H 0.96995 * 120.00104 * 179.97438 * 7 6 4
29 29 H 1.09000 * 109.46798 * 89.99795 * 13 12 2
30 30 H 1.08993 * 109.47215 * 210.00167 * 13 12 2
31 31 H 1.08999 * 109.46975 * 330.00198 * 13 12 2
32 32 H 1.09005 * 110.43022 * 201.70421 * 17 16 14
33 33 H 1.09001 * 110.42330 * 324.18420 * 17 16 14
34 34 H 1.08996 * 109.81214 * 247.54123 * 18 17 16
35 35 H 1.09005 * 110.60477 * 125.77142 * 18 17 16
36 36 H 1.08996 * 110.95059 * 266.82942 * 19 18 17
37 37 H 1.08997 * 110.97990 * 143.12945 * 19 18 17
38 38 H 1.08995 * 110.03222 * 91.25875 * 23 22 20
39 39 H 1.08998 * 110.03191 * 212.64693 * 23 22 20
40 40 H 1.08995 * 110.85951 * 33.55761 * 24 16 14
41 41 H 1.08997 * 110.85894 * 157.20533 * 24 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0322 -0.7104 -1.2305
5 1 2.1348 -1.7855 -1.2292
6 6 2.3664 0.0126 -2.3559
7 7 2.7170 -0.6120 -3.4588
8 14 2.3209 1.8797 -2.3141
9 1 3.6059 2.3942 -1.7763
10 1 2.1158 2.4007 -3.6895
11 1 1.2047 2.3283 -1.4433
12 7 2.0183 -0.6906 1.1962
13 6 1.6644 -2.0932 1.4281
14 6 2.7932 -0.0355 2.0834
15 8 3.0865 1.1254 1.8912
16 6 3.2960 -0.7461 3.3135
17 6 4.3073 -1.8047 2.9405
18 6 5.6508 -1.0435 2.8111
19 6 5.3623 0.4164 3.2872
20 6 4.1772 0.2171 4.1967
21 1 4.4999 -0.3341 5.0800
22 8 3.2323 1.1665 4.5928
23 6 2.1093 0.3626 5.0714
24 6 2.1632 -0.9865 4.2917
25 1 -0.3633 0.4178 0.9390
26 1 -0.3634 0.6043 -0.8312
27 1 -0.3634 -1.0220 -0.1077
28 1 2.9517 -0.1034 -4.2506
29 1 2.4157 -2.7376 0.9717
30 1 1.6238 -2.2852 2.5002
31 1 0.6904 -2.3001 0.9847
32 1 4.3834 -2.5530 3.7295
33 1 4.0356 -2.2739 1.9949
34 1 5.9759 -1.0422 1.7707
35 1 6.4131 -1.5008 3.4420
36 1 5.1034 1.0572 2.4443
37 1 6.2114 0.8227 3.8367
38 1 2.2101 0.1799 6.1412
39 1 1.1694 0.8752 4.8673
40 1 1.2267 -1.1676 3.7642
41 1 2.3983 -1.8131 4.9622
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687408175.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:21:04
Heat of formation + Delta-G solvation = -78.367796 kcal
Electronic energy + Delta-G solvation = -22549.286831 eV
Core-core repulsion = 19429.184868 eV
Total energy + Delta-G solvation = -3120.101962 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 267.162 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-42.65960 -39.61876 -37.13576 -36.74744 -34.82540 -33.30500 -31.70320 -28.75333
-28.29388 -27.68443 -27.25288 -24.26287 -23.15474 -21.73174 -21.33946 -19.68373
-19.10905 -18.13053 -17.45223 -16.67871 -16.56013 -16.40282 -16.30062 -15.32474
-15.16193 -15.01373 -14.61219 -14.25227 -14.08730 -13.94989 -13.57618 -13.35551
-13.32886 -13.08965 -12.92816 -12.62578 -12.59571 -12.32513 -12.29792 -12.09723
-11.87003 -11.71866 -11.44233 -11.30875 -11.18812 -10.82355 -10.42706 -10.28058
-9.28940 -8.40367 -6.42650 1.21656 1.28296 1.37091 1.87660 2.21598
2.24471 2.55625 3.02214 3.45392 3.57661 3.70679 3.93370 4.07260
4.14101 4.23570 4.32894 4.38871 4.40605 4.49614 4.60370 4.63825
4.65901 4.72229 4.78855 4.83689 4.90642 4.93883 4.97621 5.00981
5.10935 5.14060 5.16248 5.28014 5.35945 5.43853 5.52318 5.86372
6.03482 6.16112 6.61933 6.82537 7.23091 7.49624 8.75105
Molecular weight = 267.16amu
Principal moments of inertia in cm(-1)
A = 0.023124 B = 0.007332 C = 0.007098
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1210.598703 B = 3818.031504 C = 3943.741674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.222 3.778
3 H 0.033 0.967
4 C -0.514 4.514
5 H 0.054 0.946
6 C 0.031 3.969
7 N -0.932 5.932
8 Si 0.922 3.078
9 H -0.289 1.289
10 H -0.275 1.275
11 H -0.255 1.255
12 N -0.597 5.597
13 C 0.079 3.921
14 C 0.514 3.486
15 O -0.589 6.589
16 C -0.132 4.132
17 C -0.103 4.103
18 C -0.115 4.115
19 C -0.125 4.125
20 C 0.086 3.914
21 H 0.092 0.908
22 O -0.383 6.383
23 C 0.038 3.962
24 C -0.129 4.129
25 H 0.045 0.955
26 H 0.046 0.954
27 H 0.065 0.935
28 H 0.268 0.732
29 H 0.046 0.954
30 H 0.101 0.899
31 H 0.071 0.929
32 H 0.120 0.880
33 H 0.063 0.937
34 H 0.047 0.953
35 H 0.107 0.893
36 H 0.048 0.952
37 H 0.087 0.913
38 H 0.100 0.900
39 H 0.076 0.924
40 H 0.086 0.914
41 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.013 -5.518 19.360 20.131
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C 0.119 3.881
3 H 0.051 0.949
4 C -0.553 4.553
5 H 0.073 0.927
6 C -0.168 4.168
7 N -0.572 5.572
8 Si 0.749 3.251
9 H -0.215 1.215
10 H -0.200 1.200
11 H -0.180 1.180
12 N -0.328 5.328
13 C -0.063 4.063
14 C 0.303 3.697
15 O -0.470 6.470
16 C -0.135 4.135
17 C -0.141 4.141
18 C -0.153 4.153
19 C -0.163 4.163
20 C 0.027 3.973
21 H 0.109 0.891
22 O -0.302 6.302
23 C -0.038 4.038
24 C -0.167 4.167
25 H 0.064 0.936
26 H 0.065 0.935
27 H 0.084 0.916
28 H 0.077 0.923
29 H 0.065 0.935
30 H 0.119 0.881
31 H 0.090 0.910
32 H 0.138 0.862
33 H 0.082 0.918
34 H 0.065 0.935
35 H 0.125 0.875
36 H 0.066 0.934
37 H 0.105 0.895
38 H 0.118 0.882
39 H 0.094 0.906
40 H 0.104 0.896
41 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 0.171 -4.679 19.039 19.607
hybrid contribution 0.086 1.019 -1.105 1.506
sum 0.257 -3.660 17.934 18.306
Atomic orbital electron populations
1.22066 0.95992 1.01846 0.99791 1.19062 0.92505 0.93287 0.83231
0.94876 1.21346 1.43141 0.94714 0.96072 0.92735 1.25558 0.94294
1.01683 0.95290 1.69973 1.47388 1.37298 1.02541 0.86132 0.79214
0.82451 0.77338 1.21522 1.20028 1.17958 1.48183 1.49655 1.13146
1.21805 1.21962 1.01063 0.80667 1.02625 1.20890 0.77670 0.86373
0.84735 1.90590 1.59113 1.19491 1.77775 1.22422 0.98126 0.99676
0.93288 1.21644 0.92312 0.96554 1.03544 1.22722 0.98219 0.92980
1.01372 1.22028 0.96637 0.98665 0.98947 1.22498 0.91080 0.87842
0.95831 0.89090 1.88524 1.27920 1.30657 1.83146 1.24288 0.89377
0.90626 0.99491 1.22625 0.97530 0.99260 0.97240 0.93563 0.93455
0.91606 0.92289 0.93523 0.88093 0.91027 0.86208 0.91782 0.93453
0.87464 0.93363 0.89463 0.88169 0.90556 0.89586 0.85164
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.75 9.03 71.98 0.65 -5.10 16
2 C 0.22 10.86 2.30 44.24 0.10 10.96 16
3 H 0.03 1.84 4.04 -2.39 -0.01 1.83 16
4 C -0.51 -28.95 8.82 25.60 0.23 -28.73 16
5 H 0.05 3.26 7.67 -2.91 -0.02 3.23 16
6 C 0.03 1.85 5.47 84.65 0.46 2.31 16
7 N -0.93 -57.71 13.96 21.45 0.30 -57.41 16
8 Si 0.92 47.99 26.99 68.60 1.85 49.84 16
9 H -0.29 -15.70 7.11 99.48 0.71 -15.00 16
10 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16
11 H -0.26 -12.77 6.82 99.48 0.68 -12.10 16
12 N -0.60 -24.52 2.75 -826.81 -2.27 -26.79 16
13 C 0.08 2.42 7.99 127.77 1.02 3.45 16
14 C 0.51 20.98 5.53 87.66 0.48 21.47 16
15 O -0.59 -30.02 12.93 13.04 0.17 -29.85 16
16 C -0.13 -3.65 0.24 -52.38 -0.01 -3.66 16
17 C -0.10 -2.41 5.66 30.64 0.17 -2.24 16
18 C -0.12 -2.90 6.84 32.39 0.22 -2.67 16
19 C -0.13 -3.83 6.35 30.98 0.20 -3.63 16
20 C 0.09 2.44 2.91 31.49 0.09 2.53 16
21 H 0.09 1.87 7.99 -2.39 -0.02 1.85 16
22 O -0.38 -12.68 10.58 -121.57 -1.29 -13.97 16
23 C 0.04 0.85 7.58 72.99 0.55 1.41 16
24 C -0.13 -2.54 5.34 31.14 0.17 -2.37 16
25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16
26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
27 H 0.06 2.49 6.92 -2.39 -0.02 2.48 16
28 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
29 H 0.05 1.49 7.16 -2.39 -0.02 1.47 16
30 H 0.10 2.22 4.58 -2.39 -0.01 2.21 16
31 H 0.07 2.15 6.55 -2.39 -0.02 2.13 16
32 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16
33 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16
34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16
36 H 0.05 1.99 6.04 -2.39 -0.01 1.97 16
37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16
39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
40 H 0.09 1.73 6.25 -2.39 -0.01 1.71 16
41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16
Total: -1.00 -77.49 306.95 4.09 -73.40
By element:
Atomic # 1 Polarization: 10.08 SS G_CDS: 0.99 Total: 11.07 kcal
Atomic # 6 Polarization: -10.62 SS G_CDS: 4.34 Total: -6.29 kcal
Atomic # 7 Polarization: -82.23 SS G_CDS: -1.97 Total: -84.20 kcal
Atomic # 8 Polarization: -42.70 SS G_CDS: -1.12 Total: -43.82 kcal
Atomic # 14 Polarization: 47.99 SS G_CDS: 1.85 Total: 49.84 kcal
Total: -77.49 4.09 -73.40 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687408175.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.967 kcal
(2) G-P(sol) polarization free energy of solvation -77.489 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.455 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.368 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds