Wall clock time and date at job start Mon Mar 30 2020 04:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47501 * 2 1 4 4 N 1.46505 * 109.46846 * 240.00453 * 2 1 3 5 5 C 1.37096 * 120.00109 * 59.50923 * 4 2 1 6 6 H 1.08002 * 119.99689 * 42.82125 * 5 4 2 7 7 C 1.38954 * 120.00155 * 222.82413 * 5 4 2 8 8 N 1.31414 * 119.99773 * 19.17469 * 7 5 4 9 9 Si 1.86794 * 119.99872 * 199.17671 * 7 5 4 10 10 H 1.48496 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47096 * 119.99966 * 9 7 5 12 12 H 1.48504 * 109.47325 * 239.99562 * 9 7 5 13 13 C 1.34776 * 119.99978 * 239.51019 * 4 2 1 14 14 O 1.21291 * 120.00234 * 179.97438 * 13 4 2 15 15 C 1.50700 * 119.99762 * 359.97438 * 13 4 2 16 16 C 1.51077 * 110.62214 * 291.29033 * 15 13 4 17 17 C 1.54966 * 104.87665 * 276.41040 * 16 15 13 18 18 C 1.56243 * 105.87117 * 353.55368 * 17 16 15 19 19 C 1.50705 * 101.85986 * 335.02803 * 18 17 16 20 20 H 1.09007 * 108.84854 * 291.97652 * 19 18 17 21 21 O 1.39686 * 127.27442 * 158.42757 * 19 18 17 22 22 C 1.46161 * 103.81332 * 198.64873 * 21 19 18 23 23 C 1.51587 * 110.62561 * 71.43594 * 15 13 4 24 24 H 1.09000 * 109.47322 * 54.75073 * 1 2 3 25 25 H 1.08998 * 109.47714 * 174.75191 * 1 2 3 26 26 H 1.09005 * 109.47090 * 294.75172 * 1 2 3 27 27 H 1.08997 * 109.46858 * 120.00821 * 2 1 3 28 28 H 1.09007 * 109.46834 * 65.70726 * 3 2 1 29 29 H 1.08989 * 109.47305 * 185.70372 * 3 2 1 30 30 H 1.09003 * 109.47251 * 305.71491 * 3 2 1 31 31 H 0.96998 * 119.99263 * 180.02562 * 8 7 5 32 32 H 1.09004 * 110.42432 * 35.81024 * 16 15 13 33 33 H 1.08997 * 110.43127 * 158.30089 * 16 15 13 34 34 H 1.09004 * 110.54361 * 234.25859 * 17 16 15 35 35 H 1.08999 * 109.87098 * 112.49670 * 17 16 15 36 36 H 1.09006 * 110.95494 * 216.88416 * 18 17 16 37 37 H 1.08997 * 110.95416 * 93.17114 * 18 17 16 38 38 H 1.08996 * 110.03467 * 147.31100 * 22 21 19 39 39 H 1.09008 * 110.03480 * 268.69307 * 22 21 19 40 40 H 1.08998 * 110.85473 * 202.79214 * 23 15 13 41 41 H 1.08999 * 110.85926 * 326.44015 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.6788 -0.2280 -2.4414 6 1 1.6994 0.8319 -2.6478 7 6 1.3080 -1.1228 -3.4377 8 7 0.9176 -2.3364 -3.1189 9 14 1.3646 -0.6005 -5.2303 10 1 1.8348 0.8051 -5.3218 11 1 2.2975 -1.4845 -5.9742 12 1 0.0058 -0.7068 -5.8200 13 6 2.8012 -1.7806 -1.0728 14 8 3.2051 -2.3526 -2.0631 15 6 3.1748 -2.2887 0.2959 16 6 4.1063 -1.3205 0.9869 17 6 5.5169 -1.6751 0.4522 18 6 5.3346 -2.9637 -0.4124 19 6 4.0912 -3.5667 0.1887 20 1 4.3177 -3.9065 1.1993 21 8 3.2192 -4.4793 -0.4096 22 6 1.9994 -4.3713 0.3884 23 6 1.9762 -2.9189 0.9771 24 1 -0.3634 0.5931 -0.8392 25 1 -0.3634 -1.0233 -0.0940 26 1 -0.3633 0.4303 0.9333 27 1 1.8933 -0.5140 0.8899 28 1 1.7626 1.9259 0.9367 29 1 3.1252 1.4441 -0.1021 30 1 1.5956 1.9850 -0.8344 31 1 0.6592 -2.9610 -3.8145 32 1 3.8434 -0.2934 0.7339 33 1 4.0750 -1.4673 2.0665 34 1 6.2011 -1.8703 1.2780 35 1 5.8953 -0.8595 -0.1639 36 1 6.1870 -3.6335 -0.2984 37 1 5.1774 -2.7106 -1.4609 38 1 1.1255 -4.5415 -0.2404 39 1 2.0203 -5.0960 1.2024 40 1 2.1023 -2.9218 2.0598 41 1 1.0559 -2.4082 0.6938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687409143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:05 Heat of formation + Delta-G solvation = -47.786949 kcal Electronic energy + Delta-G solvation = -23219.939841 eV Core-core repulsion = 20101.163964 eV Total energy + Delta-G solvation = -3118.775877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85381 -37.55521 -35.30692 -34.86552 -32.20406 -31.36169 -29.72947 -27.43023 -26.82195 -26.37851 -24.75895 -21.71099 -21.65762 -20.48896 -19.62842 -18.70555 -16.70254 -15.72274 -15.14853 -15.08019 -14.75169 -14.38212 -14.32185 -13.75927 -13.27358 -13.06826 -13.01112 -12.35393 -12.14293 -12.01133 -11.72456 -11.54931 -11.44270 -11.25528 -11.02255 -10.85972 -10.78812 -10.70588 -10.43916 -10.39173 -10.21072 -10.10341 -9.88784 -9.78024 -9.64577 -8.80382 -8.58643 -7.73541 -6.90966 -5.96823 -3.69786 3.37080 3.46726 3.48896 3.98509 4.34840 4.50667 4.96101 5.10726 5.14129 5.26591 5.42513 5.47616 5.50955 5.62951 5.69279 5.72594 5.81661 5.87349 5.96683 6.03258 6.09935 6.14575 6.20988 6.23434 6.30393 6.31879 6.37573 6.53154 6.56633 6.58830 6.68083 6.69668 6.76368 6.98122 7.00346 7.18103 7.62206 7.76350 8.42768 9.23698 9.37386 9.84893 10.52184 11.11562 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.009993 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.913200 B = 2801.379496 C = 3229.312738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 C -0.154 4.154 4 N -0.451 5.451 5 C -0.343 4.343 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.825 5.825 9 Si 0.901 3.099 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.289 1.289 13 C 0.503 3.497 14 O -0.515 6.515 15 C -0.135 4.135 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.091 3.909 20 H 0.040 0.960 21 O -0.335 6.335 22 C 0.054 3.946 23 C -0.133 4.133 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 1.709 10.958 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.212 4.212 4 N -0.174 5.174 5 C -0.470 4.470 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.459 5.459 9 Si 0.729 3.271 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.216 1.216 13 C 0.289 3.711 14 O -0.391 6.391 15 C -0.139 4.139 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.151 4.151 19 C 0.031 3.969 20 H 0.057 0.943 21 O -0.253 6.253 22 C -0.022 4.022 23 C -0.171 4.171 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.133 1.086 10.172 10.699 hybrid contribution -0.279 0.278 -0.588 0.707 sum 2.854 1.364 9.584 10.093 Atomic orbital electron populations 1.21974 0.96237 1.02064 1.00005 1.21109 0.93989 0.92970 0.90381 1.22099 1.00822 0.97572 1.00696 1.43257 1.43647 1.26583 1.03920 1.18814 1.48707 0.92679 0.86825 0.90843 1.25123 0.94036 0.95372 0.99143 1.69867 1.37213 1.05627 1.33195 0.86333 0.77153 0.78563 0.85038 1.19856 1.20886 1.21562 1.19173 0.80923 0.83123 0.87881 1.90492 1.53992 1.56062 1.38514 1.22415 0.95870 0.97731 0.97917 1.21638 0.94271 0.99610 0.98835 1.22648 0.96451 0.97475 0.98687 1.21961 0.94578 0.95452 1.03118 1.22175 0.92783 0.87557 0.94389 0.94254 1.88568 1.23160 1.59747 1.53829 1.24046 0.88954 0.95104 0.94133 1.22585 0.99232 0.96446 0.98806 0.91952 0.92747 0.94305 0.91275 0.93588 0.93154 0.92148 0.92997 0.90426 0.91927 0.92004 0.91428 0.92191 0.87845 0.89354 0.93079 0.91264 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.85 37.16 0.33 -2.36 16 2 C 0.12 2.32 1.48 -67.93 -0.10 2.22 16 3 C -0.15 -2.61 8.71 37.16 0.32 -2.28 16 4 N -0.45 -10.88 2.44 -107.73 -0.26 -11.14 16 5 C -0.34 -9.26 8.02 -14.93 -0.12 -9.38 16 6 H 0.07 1.95 7.09 -52.49 -0.37 1.57 16 7 C 0.07 2.07 4.35 -17.47 -0.08 2.00 16 8 N -0.83 -24.39 11.68 55.50 0.65 -23.75 16 9 Si 0.90 22.27 29.59 -169.99 -5.03 17.24 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.50 12.38 4.80 -10.99 -0.05 12.33 16 14 O -0.51 -14.97 11.22 -11.73 -0.13 -15.10 16 15 C -0.14 -2.62 0.20 -154.82 -0.03 -2.66 16 16 C -0.11 -1.71 5.17 -26.66 -0.14 -1.84 16 17 C -0.11 -1.77 6.84 -23.95 -0.16 -1.94 16 18 C -0.11 -2.09 6.35 -26.14 -0.17 -2.26 16 19 C 0.09 1.76 2.91 -25.36 -0.07 1.69 16 20 H 0.04 0.67 8.01 -51.93 -0.42 0.26 16 21 O -0.34 -7.52 10.54 -49.35 -0.52 -8.04 16 22 C 0.05 1.02 7.61 39.17 0.30 1.31 16 23 C -0.13 -2.35 5.45 -25.43 -0.14 -2.49 16 24 H 0.06 1.24 7.82 -51.93 -0.41 0.84 16 25 H 0.05 1.10 7.31 -51.93 -0.38 0.72 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.22 4.24 -51.93 -0.22 1.00 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.86 7.19 -51.94 -0.37 0.48 16 30 H 0.06 1.09 7.32 -51.93 -0.38 0.71 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.08 1.29 5.10 -51.93 -0.26 1.02 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 2.31 6.04 -51.93 -0.31 2.00 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 39 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.64 5.71 -51.93 -0.30 1.35 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -32.56 304.97 -7.17 -39.73 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.36 Total: 2.12 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.11 Total: -5.66 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.38 Total: -34.89 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.65 Total: -23.14 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.56 -7.17 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687409143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.056 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds