Wall clock time and date at job start Mon Mar 30 2020 04:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47501 * 2 1 4 4 N 1.46505 * 109.46846 * 240.00453 * 2 1 3 5 5 C 1.37096 * 120.00109 * 59.50923 * 4 2 1 6 6 H 1.08002 * 119.99689 * 42.82125 * 5 4 2 7 7 C 1.38954 * 120.00155 * 222.82413 * 5 4 2 8 8 N 1.31414 * 119.99773 * 19.17469 * 7 5 4 9 9 Si 1.86794 * 119.99872 * 199.17671 * 7 5 4 10 10 H 1.48496 * 109.47351 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47096 * 119.99966 * 9 7 5 12 12 H 1.48504 * 109.47325 * 239.99562 * 9 7 5 13 13 C 1.34776 * 119.99978 * 239.51019 * 4 2 1 14 14 O 1.21291 * 120.00234 * 179.97438 * 13 4 2 15 15 C 1.50700 * 119.99762 * 359.97438 * 13 4 2 16 16 C 1.51077 * 110.62214 * 291.29033 * 15 13 4 17 17 C 1.54966 * 104.87665 * 276.41040 * 16 15 13 18 18 C 1.56243 * 105.87117 * 353.55368 * 17 16 15 19 19 C 1.50705 * 101.85986 * 335.02803 * 18 17 16 20 20 H 1.09007 * 108.84854 * 291.97652 * 19 18 17 21 21 O 1.39686 * 127.27442 * 158.42757 * 19 18 17 22 22 C 1.46161 * 103.81332 * 198.64873 * 21 19 18 23 23 C 1.51587 * 110.62561 * 71.43594 * 15 13 4 24 24 H 1.09000 * 109.47322 * 54.75073 * 1 2 3 25 25 H 1.08998 * 109.47714 * 174.75191 * 1 2 3 26 26 H 1.09005 * 109.47090 * 294.75172 * 1 2 3 27 27 H 1.08997 * 109.46858 * 120.00821 * 2 1 3 28 28 H 1.09007 * 109.46834 * 65.70726 * 3 2 1 29 29 H 1.08989 * 109.47305 * 185.70372 * 3 2 1 30 30 H 1.09003 * 109.47251 * 305.71491 * 3 2 1 31 31 H 0.96998 * 119.99263 * 180.02562 * 8 7 5 32 32 H 1.09004 * 110.42432 * 35.81024 * 16 15 13 33 33 H 1.08997 * 110.43127 * 158.30089 * 16 15 13 34 34 H 1.09004 * 110.54361 * 234.25859 * 17 16 15 35 35 H 1.08999 * 109.87098 * 112.49670 * 17 16 15 36 36 H 1.09006 * 110.95494 * 216.88416 * 18 17 16 37 37 H 1.08997 * 110.95416 * 93.17114 * 18 17 16 38 38 H 1.08996 * 110.03467 * 147.31100 * 22 21 19 39 39 H 1.09008 * 110.03480 * 268.69307 * 22 21 19 40 40 H 1.08998 * 110.85473 * 202.79214 * 23 15 13 41 41 H 1.08999 * 110.85926 * 326.44015 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 1.6788 -0.2280 -2.4414 6 1 1.6994 0.8319 -2.6478 7 6 1.3080 -1.1228 -3.4377 8 7 0.9176 -2.3364 -3.1189 9 14 1.3646 -0.6005 -5.2303 10 1 1.8348 0.8051 -5.3218 11 1 2.2975 -1.4845 -5.9742 12 1 0.0058 -0.7068 -5.8200 13 6 2.8012 -1.7806 -1.0728 14 8 3.2051 -2.3526 -2.0631 15 6 3.1748 -2.2887 0.2959 16 6 4.1063 -1.3205 0.9869 17 6 5.5169 -1.6751 0.4522 18 6 5.3346 -2.9637 -0.4124 19 6 4.0912 -3.5667 0.1887 20 1 4.3177 -3.9065 1.1993 21 8 3.2192 -4.4793 -0.4096 22 6 1.9994 -4.3713 0.3884 23 6 1.9762 -2.9189 0.9771 24 1 -0.3634 0.5931 -0.8392 25 1 -0.3634 -1.0233 -0.0940 26 1 -0.3633 0.4303 0.9333 27 1 1.8933 -0.5140 0.8899 28 1 1.7626 1.9259 0.9367 29 1 3.1252 1.4441 -0.1021 30 1 1.5956 1.9850 -0.8344 31 1 0.6592 -2.9610 -3.8145 32 1 3.8434 -0.2934 0.7339 33 1 4.0750 -1.4673 2.0665 34 1 6.2011 -1.8703 1.2780 35 1 5.8953 -0.8595 -0.1639 36 1 6.1870 -3.6335 -0.2984 37 1 5.1774 -2.7106 -1.4609 38 1 1.1255 -4.5415 -0.2404 39 1 2.0203 -5.0960 1.2024 40 1 2.1023 -2.9218 2.0598 41 1 1.0559 -2.4082 0.6938 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687409143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:04 Heat of formation + Delta-G solvation = -68.709223 kcal Electronic energy + Delta-G solvation = -23220.847099 eV Core-core repulsion = 20101.163964 eV Total energy + Delta-G solvation = -3119.683135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37800 -39.28332 -36.86358 -36.56506 -34.19698 -32.84021 -31.53353 -28.82314 -28.27880 -27.80546 -26.68844 -23.35233 -23.09593 -22.02972 -21.04588 -20.47689 -18.30553 -17.53569 -16.94357 -16.55256 -16.19540 -16.15761 -16.01451 -15.29013 -15.01012 -14.67769 -14.45170 -13.90730 -13.68342 -13.54491 -13.32191 -13.09360 -13.00363 -12.92462 -12.64730 -12.52279 -12.49041 -12.22640 -12.10080 -11.96113 -11.88926 -11.58563 -11.42208 -11.23971 -11.06275 -10.68881 -10.25962 -9.64276 -8.89051 -8.09163 -5.82888 1.34129 1.41827 1.48238 2.35549 2.56850 2.69280 3.27645 3.37491 3.70453 3.76010 3.89498 4.10154 4.16766 4.23105 4.32497 4.34930 4.46679 4.49870 4.52801 4.62751 4.71894 4.75435 4.89878 4.92873 4.95283 4.99097 5.05319 5.10405 5.13558 5.20762 5.22690 5.31813 5.40766 5.51639 5.58237 5.61137 5.67622 6.18516 6.32878 7.19291 7.43738 7.91167 8.62418 8.98286 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018143 B = 0.009993 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.913200 B = 2801.379496 C = 3229.312738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.115 3.885 3 C -0.147 4.147 4 N -0.465 5.465 5 C -0.344 4.344 6 H 0.073 0.927 7 C 0.023 3.977 8 N -0.860 5.860 9 Si 0.952 3.048 10 H -0.259 1.259 11 H -0.302 1.302 12 H -0.279 1.279 13 C 0.492 3.508 14 O -0.572 6.572 15 C -0.131 4.131 16 C -0.104 4.104 17 C -0.106 4.106 18 C -0.121 4.121 19 C 0.079 3.921 20 H 0.079 0.921 21 O -0.381 6.381 22 C 0.048 3.952 23 C -0.126 4.126 24 H 0.039 0.961 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.250 0.750 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 2.946 14.691 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 C -0.205 4.205 4 N -0.188 5.188 5 C -0.472 4.472 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.496 5.496 9 Si 0.779 3.221 10 H -0.183 1.183 11 H -0.229 1.229 12 H -0.205 1.205 13 C 0.280 3.720 14 O -0.452 6.452 15 C -0.135 4.135 16 C -0.141 4.141 17 C -0.144 4.144 18 C -0.158 4.158 19 C 0.020 3.980 20 H 0.097 0.903 21 O -0.300 6.300 22 C -0.028 4.028 23 C -0.163 4.163 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.925 2.378 13.931 14.668 hybrid contribution -0.497 -0.098 -1.737 1.809 sum 3.428 2.280 12.194 12.871 Atomic orbital electron populations 1.21907 0.95914 1.00337 1.01371 1.21399 0.94287 0.94113 0.89084 1.22032 1.00407 0.95833 1.02185 1.43534 1.43768 1.26961 1.04568 1.19017 1.47073 0.92532 0.88607 0.90942 1.25832 0.94394 0.95557 1.02485 1.69992 1.39600 1.06654 1.33338 0.85524 0.77010 0.78362 0.81171 1.18312 1.22948 1.20529 1.20164 0.79763 0.82317 0.89733 1.90467 1.55858 1.57644 1.41207 1.22366 0.97174 0.98795 0.95128 1.21720 0.93137 0.98104 1.01148 1.22658 0.97170 0.95294 0.99255 1.21998 0.95494 0.97637 1.00708 1.22510 0.92540 0.87018 0.95922 0.90292 1.88520 1.24831 1.60769 1.55877 1.24184 0.86835 0.97412 0.94336 1.22620 0.97415 0.94782 1.01502 0.94169 0.95359 0.89885 0.88839 0.89450 0.93408 0.93928 0.94113 0.91063 0.87330 0.87719 0.92391 0.90056 0.93164 0.92742 0.88852 0.86056 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 8.85 71.98 0.64 -4.29 16 2 C 0.11 4.21 1.48 44.99 0.07 4.28 16 3 C -0.15 -4.58 8.71 71.98 0.63 -3.95 16 4 N -0.47 -22.66 2.44 -613.13 -1.50 -24.16 16 5 C -0.34 -19.07 8.02 84.04 0.67 -18.40 16 6 H 0.07 3.92 7.09 -2.91 -0.02 3.90 16 7 C 0.02 1.37 4.35 84.93 0.37 1.74 16 8 N -0.86 -53.65 11.68 21.66 0.25 -53.40 16 9 Si 0.95 47.61 29.59 68.60 2.03 49.64 16 10 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.30 -15.93 7.11 99.48 0.71 -15.22 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 C 0.49 24.59 4.80 87.66 0.42 25.01 16 14 O -0.57 -34.95 11.22 13.45 0.15 -34.80 16 15 C -0.13 -4.79 0.20 -52.38 -0.01 -4.80 16 16 C -0.10 -2.88 5.17 30.64 0.16 -2.73 16 17 C -0.11 -2.91 6.84 32.39 0.22 -2.69 16 18 C -0.12 -4.33 6.35 30.98 0.20 -4.13 16 19 C 0.08 2.92 2.91 31.48 0.09 3.01 16 20 H 0.08 2.30 8.01 -2.38 -0.02 2.28 16 21 O -0.38 -17.21 10.54 -121.15 -1.28 -18.49 16 22 C 0.05 1.77 7.61 73.29 0.56 2.33 16 23 C -0.13 -4.08 5.45 31.44 0.17 -3.91 16 24 H 0.04 1.59 7.82 -2.39 -0.02 1.57 16 25 H 0.03 1.14 7.31 -2.39 -0.02 1.12 16 26 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 27 H 0.09 2.96 4.24 -2.39 -0.01 2.95 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.05 1.51 7.19 -2.39 -0.02 1.49 16 30 H 0.04 1.46 7.32 -2.39 -0.02 1.45 16 31 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.07 2.09 5.10 -2.38 -0.01 2.08 16 33 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.05 2.35 6.04 -2.39 -0.01 2.33 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.07 2.42 5.71 -2.39 -0.01 2.41 16 Total: -1.00 -77.84 304.97 4.85 -72.99 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.01 Total: 16.76 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.18 Total: -8.54 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.25 Total: -77.56 kcal Atomic # 8 Polarization: -52.17 SS G_CDS: -1.13 Total: -53.29 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -77.84 4.85 -72.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687409143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.276 kcal (2) G-P(sol) polarization free energy of solvation -77.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds