Wall clock time and date at job start Mon Mar 30 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 N 1.46503 * 109.47333 * 120.00066 * 2 1 3 5 5 C 1.37096 * 119.99960 * 67.67752 * 4 2 1 6 6 H 1.08004 * 120.00233 * 192.95802 * 5 4 2 7 7 C 1.38955 * 120.00173 * 12.68019 * 5 4 2 8 8 N 1.31409 * 119.99737 * 357.85883 * 7 5 4 9 9 Si 1.86803 * 120.00232 * 177.85417 * 7 5 4 10 10 H 1.48500 * 109.46881 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46981 * 120.00140 * 9 7 5 12 12 H 1.48497 * 109.47045 * 240.00248 * 9 7 5 13 13 C 1.34772 * 119.99955 * 247.68208 * 4 2 1 14 14 O 1.21290 * 120.00411 * 355.24673 * 13 4 2 15 15 C 1.50703 * 119.99850 * 175.25124 * 13 4 2 16 16 C 1.54051 * 111.89780 * 64.73852 * 15 13 4 17 17 C 1.56556 * 103.30778 * 99.08579 * 16 15 13 18 18 C 1.54804 * 103.26523 * 37.71754 * 17 16 15 19 19 C 1.54310 * 104.51664 * 322.83578 * 18 17 16 20 20 H 1.09006 * 111.88191 * 260.41471 * 19 18 17 21 21 O 1.43824 * 108.56011 * 137.13438 * 19 18 17 22 22 C 1.44300 * 107.21821 * 219.71663 * 21 19 18 23 23 C 1.54618 * 111.94004 * 301.92061 * 15 13 4 24 24 H 1.08995 * 109.47170 * 306.35013 * 1 2 3 25 25 H 1.09004 * 109.47250 * 66.35203 * 1 2 3 26 26 H 1.08999 * 109.46906 * 186.34992 * 1 2 3 27 27 H 1.09007 * 109.47404 * 240.00093 * 2 1 3 28 28 H 1.09004 * 109.46964 * 175.62278 * 3 2 1 29 29 H 1.08993 * 109.47142 * 295.61698 * 3 2 1 30 30 H 1.08998 * 109.47237 * 55.62368 * 3 2 1 31 31 H 0.97009 * 120.00206 * 180.02562 * 8 7 5 32 32 H 1.08994 * 110.51243 * 216.20572 * 16 15 13 33 33 H 1.09002 * 110.50777 * 338.90127 * 16 15 13 34 34 H 1.09003 * 110.12232 * 279.41147 * 17 16 15 35 35 H 1.08996 * 111.04448 * 156.46363 * 17 16 15 36 36 H 1.08996 * 110.42646 * 204.07381 * 18 17 16 37 37 H 1.09004 * 110.42549 * 81.59169 * 18 17 16 38 38 H 1.09000 * 110.62313 * 281.43072 * 22 21 19 39 39 H 1.09010 * 110.61944 * 158.43005 * 22 21 19 40 40 H 1.09000 * 110.90753 * 18.53755 * 23 15 13 41 41 H 1.08995 * 110.91005 * 142.14887 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.8217 -2.0401 1.3369 6 1 1.9877 -2.5132 2.2935 7 6 1.4033 -2.7983 0.2502 8 7 1.1555 -2.2154 -0.9012 9 14 1.1931 -4.6461 0.4260 10 1 1.5327 -5.0531 1.8131 11 1 -0.2155 -5.0141 0.1334 12 1 2.0945 -5.3399 -0.5287 13 6 2.6609 0.0007 2.1583 14 8 2.9111 1.1763 1.9960 15 6 3.0685 -0.6871 3.4357 16 6 4.1187 -1.7863 3.1865 17 6 5.4689 -1.0849 3.5552 18 6 5.0930 -0.2098 4.7755 19 6 3.6720 0.3030 4.4607 20 1 3.6845 1.3208 4.0707 21 8 2.8765 0.2097 5.6553 22 6 1.5632 -0.2387 5.2601 23 6 1.8567 -1.3032 4.1723 24 1 -0.3633 0.6091 0.8277 25 1 -0.3634 0.4122 -0.9414 26 1 -0.3633 -1.0214 0.1137 27 1 1.8934 -0.5138 -0.8900 28 1 3.1272 1.4435 0.0784 29 1 1.7422 1.9331 -0.9266 30 1 1.6140 1.9785 0.8482 31 1 0.8631 -2.7446 -1.6598 32 1 3.9525 -2.6317 3.8541 33 1 4.0936 -2.1096 2.1459 34 1 5.8084 -0.4651 2.7253 35 1 6.2297 -1.8174 3.8248 36 1 5.7861 0.6258 4.8724 37 1 5.0881 -0.8088 5.6862 38 1 0.9850 0.5862 4.8438 39 1 1.0403 -0.6874 6.1048 40 1 1.0074 -1.4149 3.4982 41 1 2.1211 -2.2590 4.6245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687409146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:08 Heat of formation + Delta-G solvation = -53.019712 kcal Electronic energy + Delta-G solvation = -22863.461535 eV Core-core repulsion = 19744.458749 eV Total energy + Delta-G solvation = -3119.002787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41960 -38.14574 -35.23487 -34.82567 -32.28304 -31.75205 -30.19294 -27.24529 -26.76563 -25.85457 -24.90892 -21.93046 -21.74411 -20.45278 -19.47100 -18.59361 -17.44103 -15.62151 -15.40866 -15.26210 -14.66226 -14.44492 -14.19187 -13.77001 -13.73681 -13.21852 -12.76194 -12.68920 -12.11486 -11.91976 -11.60861 -11.56910 -11.24467 -11.17614 -11.04026 -10.86532 -10.71723 -10.59059 -10.48017 -10.33625 -10.26842 -10.13818 -10.04758 -9.90701 -9.69131 -9.09192 -8.86934 -7.77223 -7.68980 -6.19029 -3.95237 3.03495 3.15111 3.16985 3.81707 3.99681 4.27614 4.62350 4.94194 5.08235 5.15536 5.41615 5.49901 5.54301 5.70820 5.80847 5.93271 6.01062 6.07945 6.15524 6.16047 6.28897 6.33159 6.40704 6.49797 6.54769 6.63018 6.64997 6.71429 6.74816 6.78021 6.85723 6.98108 7.12148 7.30102 7.37288 7.42480 7.68624 7.74182 7.88520 8.46530 9.04346 9.55532 9.91869 10.58955 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.009172 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.022724 B = 3052.167788 C = 3653.409784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.142 3.858 3 C -0.134 4.134 4 N -0.433 5.433 5 C -0.325 4.325 6 H 0.108 0.892 7 C 0.032 3.968 8 N -0.868 5.868 9 Si 0.920 3.080 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.469 3.531 14 O -0.598 6.598 15 C -0.091 4.091 16 C -0.105 4.105 17 C -0.124 4.124 18 C -0.120 4.120 19 C 0.087 3.913 20 H 0.095 0.905 21 O -0.384 6.384 22 C 0.047 3.953 23 C -0.144 4.144 24 H 0.016 0.984 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.057 0.943 29 H 0.015 0.985 30 H 0.057 0.943 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -1.131 5.815 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.040 3.960 3 C -0.191 4.191 4 N -0.150 5.150 5 C -0.453 4.453 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.508 5.508 9 Si 0.747 3.253 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.257 3.743 14 O -0.486 6.486 15 C -0.094 4.094 16 C -0.143 4.143 17 C -0.162 4.162 18 C -0.157 4.157 19 C 0.029 3.971 20 H 0.112 0.888 21 O -0.303 6.303 22 C -0.029 4.029 23 C -0.182 4.182 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.119 -0.604 5.704 6.115 hybrid contribution -0.445 -1.109 -0.228 1.216 sum 1.674 -1.712 5.476 5.977 Atomic orbital electron populations 1.21943 0.96967 1.01735 0.97649 1.21627 0.93484 0.90528 0.90410 1.22379 1.01757 0.96954 0.98027 1.43787 1.47075 1.07569 1.16549 1.19992 1.45030 0.82364 0.97900 0.87421 1.25284 0.96715 1.00074 0.94995 1.70043 1.44512 1.34524 1.01709 0.85947 0.78077 0.82655 0.78634 1.19297 1.20702 1.20600 1.19470 0.82722 0.86707 0.85368 1.90581 1.60792 1.16777 1.80425 1.22222 0.96304 0.95895 0.95024 1.22749 0.92402 0.95757 1.03353 1.22789 0.97551 0.98405 0.97428 1.22457 0.95239 0.99358 0.98671 1.23451 0.90298 0.99674 0.83662 0.88751 1.88757 1.22711 1.88667 1.30177 1.23526 0.85832 0.96132 0.97420 1.23372 0.99239 0.98179 0.97376 0.96529 0.94565 0.90847 0.85631 0.92415 0.96660 0.92366 0.92356 0.91753 0.88917 0.91519 0.91768 0.91688 0.90959 0.92630 0.89741 0.88430 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 8.59 37.16 0.32 -2.49 16 2 C 0.14 3.38 2.82 -67.93 -0.19 3.19 16 3 C -0.13 -3.06 7.56 37.16 0.28 -2.78 16 4 N -0.43 -10.29 2.71 -107.73 -0.29 -10.59 16 5 C -0.33 -7.54 6.37 -14.93 -0.10 -7.63 16 6 H 0.11 2.36 4.26 -52.48 -0.22 2.13 16 7 C 0.03 0.75 4.78 -17.47 -0.08 0.67 16 8 N -0.87 -20.96 8.00 55.50 0.44 -20.51 16 9 Si 0.92 18.48 29.55 -169.99 -5.02 13.45 16 10 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 11 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.47 10.84 6.43 -10.99 -0.07 10.77 16 14 O -0.60 -14.93 10.74 5.55 0.06 -14.87 16 15 C -0.09 -1.77 0.46 -153.33 -0.07 -1.84 16 16 C -0.10 -1.87 4.96 -24.27 -0.12 -1.99 16 17 C -0.12 -1.96 6.93 -23.87 -0.17 -2.12 16 18 C -0.12 -1.90 6.55 -25.09 -0.16 -2.06 16 19 C 0.09 1.63 3.91 -25.12 -0.10 1.53 16 20 H 0.09 1.97 6.76 -51.93 -0.35 1.62 16 21 O -0.38 -7.09 11.03 -35.23 -0.39 -7.47 16 22 C 0.05 0.80 7.72 38.21 0.29 1.09 16 23 C -0.14 -2.57 4.79 -24.83 -0.12 -2.69 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.75 5.97 -51.93 -0.31 1.44 16 27 H 0.13 3.23 5.68 -51.93 -0.29 2.93 16 28 H 0.06 1.39 6.77 -51.93 -0.35 1.03 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 1.39 6.63 -51.93 -0.34 1.05 16 31 H 0.26 6.14 8.31 -40.82 -0.34 5.80 16 32 H 0.06 1.05 7.24 -51.93 -0.38 0.67 16 33 H 0.09 1.84 6.44 -51.93 -0.33 1.51 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.10 1.89 6.29 -51.93 -0.33 1.57 16 41 H 0.07 1.23 7.24 -51.93 -0.38 0.85 16 LS Contribution 299.94 15.07 4.52 4.52 Total: -1.00 -25.75 299.94 -7.18 -32.93 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.22 Total: 8.91 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.28 Total: -6.37 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.15 Total: -31.10 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.33 Total: -22.34 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -25.75 -7.18 -32.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687409146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.088 kcal (2) G-P(sol) polarization free energy of solvation -25.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds