Wall clock time and date at job start Mon Mar 30 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47144 * 2 1 4 4 N 1.46503 * 109.47333 * 120.00066 * 2 1 3 5 5 C 1.37096 * 119.99960 * 67.67752 * 4 2 1 6 6 H 1.08004 * 120.00233 * 192.95802 * 5 4 2 7 7 C 1.38955 * 120.00173 * 12.68019 * 5 4 2 8 8 N 1.31409 * 119.99737 * 357.85883 * 7 5 4 9 9 Si 1.86803 * 120.00232 * 177.85417 * 7 5 4 10 10 H 1.48500 * 109.46881 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46981 * 120.00140 * 9 7 5 12 12 H 1.48497 * 109.47045 * 240.00248 * 9 7 5 13 13 C 1.34772 * 119.99955 * 247.68208 * 4 2 1 14 14 O 1.21290 * 120.00411 * 355.24673 * 13 4 2 15 15 C 1.50703 * 119.99850 * 175.25124 * 13 4 2 16 16 C 1.54051 * 111.89780 * 64.73852 * 15 13 4 17 17 C 1.56556 * 103.30778 * 99.08579 * 16 15 13 18 18 C 1.54804 * 103.26523 * 37.71754 * 17 16 15 19 19 C 1.54310 * 104.51664 * 322.83578 * 18 17 16 20 20 H 1.09006 * 111.88191 * 260.41471 * 19 18 17 21 21 O 1.43824 * 108.56011 * 137.13438 * 19 18 17 22 22 C 1.44300 * 107.21821 * 219.71663 * 21 19 18 23 23 C 1.54618 * 111.94004 * 301.92061 * 15 13 4 24 24 H 1.08995 * 109.47170 * 306.35013 * 1 2 3 25 25 H 1.09004 * 109.47250 * 66.35203 * 1 2 3 26 26 H 1.08999 * 109.46906 * 186.34992 * 1 2 3 27 27 H 1.09007 * 109.47404 * 240.00093 * 2 1 3 28 28 H 1.09004 * 109.46964 * 175.62278 * 3 2 1 29 29 H 1.08993 * 109.47142 * 295.61698 * 3 2 1 30 30 H 1.08998 * 109.47237 * 55.62368 * 3 2 1 31 31 H 0.97009 * 120.00206 * 180.02562 * 8 7 5 32 32 H 1.08994 * 110.51243 * 216.20572 * 16 15 13 33 33 H 1.09002 * 110.50777 * 338.90127 * 16 15 13 34 34 H 1.09003 * 110.12232 * 279.41147 * 17 16 15 35 35 H 1.08996 * 111.04448 * 156.46363 * 17 16 15 36 36 H 1.08996 * 110.42646 * 204.07381 * 18 17 16 37 37 H 1.09004 * 110.42549 * 81.59169 * 18 17 16 38 38 H 1.09000 * 110.62313 * 281.43072 * 22 21 19 39 39 H 1.09010 * 110.61944 * 158.43005 * 22 21 19 40 40 H 1.09000 * 110.90753 * 18.53755 * 23 15 13 41 41 H 1.08995 * 110.91005 * 142.14887 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.8217 -2.0401 1.3369 6 1 1.9877 -2.5132 2.2935 7 6 1.4033 -2.7983 0.2502 8 7 1.1555 -2.2154 -0.9012 9 14 1.1931 -4.6461 0.4260 10 1 1.5327 -5.0531 1.8131 11 1 -0.2155 -5.0141 0.1334 12 1 2.0945 -5.3399 -0.5287 13 6 2.6609 0.0007 2.1583 14 8 2.9111 1.1763 1.9960 15 6 3.0685 -0.6871 3.4357 16 6 4.1187 -1.7863 3.1865 17 6 5.4689 -1.0849 3.5552 18 6 5.0930 -0.2098 4.7755 19 6 3.6720 0.3030 4.4607 20 1 3.6845 1.3208 4.0707 21 8 2.8765 0.2097 5.6553 22 6 1.5632 -0.2387 5.2601 23 6 1.8567 -1.3032 4.1723 24 1 -0.3633 0.6091 0.8277 25 1 -0.3634 0.4122 -0.9414 26 1 -0.3633 -1.0214 0.1137 27 1 1.8934 -0.5138 -0.8900 28 1 3.1272 1.4435 0.0784 29 1 1.7422 1.9331 -0.9266 30 1 1.6140 1.9785 0.8482 31 1 0.8631 -2.7446 -1.6598 32 1 3.9525 -2.6317 3.8541 33 1 4.0936 -2.1096 2.1459 34 1 5.8084 -0.4651 2.7253 35 1 6.2297 -1.8174 3.8248 36 1 5.7861 0.6258 4.8724 37 1 5.0881 -0.8088 5.6862 38 1 0.9850 0.5862 4.8438 39 1 1.0403 -0.6874 6.1048 40 1 1.0074 -1.4149 3.4982 41 1 2.1211 -2.2590 4.6245 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687409146.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:08 Heat of formation + Delta-G solvation = -66.662954 kcal Electronic energy + Delta-G solvation = -22864.053151 eV Core-core repulsion = 19744.458749 eV Total energy + Delta-G solvation = -3119.594402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.99313 -39.82723 -37.03938 -36.26703 -33.91281 -33.52419 -31.85519 -28.66520 -28.15787 -27.72153 -26.71147 -23.56439 -23.27470 -21.83419 -21.11142 -20.33629 -19.09295 -17.08524 -17.00608 -16.94254 -16.32498 -16.03436 -15.81759 -15.55498 -15.18944 -14.62941 -14.47659 -14.25329 -13.80502 -13.59235 -13.30793 -13.00905 -12.94180 -12.85864 -12.69656 -12.44812 -12.25081 -12.16586 -11.97889 -11.85402 -11.82146 -11.70096 -11.64155 -11.46314 -11.31561 -10.70277 -10.52967 -9.63206 -9.51152 -7.98311 -5.78371 1.43598 1.51683 1.61469 2.06829 2.31901 2.86187 2.96832 3.25207 3.57411 3.75476 3.96488 4.13603 4.25200 4.28710 4.35630 4.45443 4.54584 4.57012 4.64515 4.73667 4.81075 4.85038 4.87259 4.92003 5.02285 5.06230 5.12091 5.14512 5.17210 5.21007 5.23760 5.37920 5.43189 5.45840 5.53278 5.83835 5.86397 5.99024 6.00748 6.62580 7.23194 7.74386 8.10902 8.81437 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018649 B = 0.009172 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.022724 B = 3052.167788 C = 3653.409784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.137 3.863 3 C -0.117 4.117 4 N -0.443 5.443 5 C -0.333 4.333 6 H 0.121 0.879 7 C -0.008 4.008 8 N -0.891 5.891 9 Si 0.980 3.020 10 H -0.254 1.254 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.457 3.543 14 O -0.626 6.626 15 C -0.094 4.094 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.111 4.111 19 C 0.084 3.916 20 H 0.064 0.936 21 O -0.387 6.387 22 C 0.048 3.952 23 C -0.140 4.140 24 H 0.014 0.986 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.109 0.891 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.120 0.880 40 H 0.079 0.921 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -2.766 7.440 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.034 3.966 3 C -0.174 4.174 4 N -0.160 5.160 5 C -0.460 4.460 6 H 0.139 0.861 7 C -0.208 4.208 8 N -0.532 5.532 9 Si 0.805 3.195 10 H -0.177 1.177 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.246 3.754 14 O -0.516 6.516 15 C -0.098 4.098 16 C -0.141 4.141 17 C -0.155 4.155 18 C -0.149 4.149 19 C 0.026 3.974 20 H 0.082 0.918 21 O -0.306 6.306 22 C -0.029 4.029 23 C -0.177 4.177 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.114 0.886 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.058 0.942 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.516 -2.238 7.343 8.078 hybrid contribution -0.589 -0.524 -0.777 1.106 sum 1.928 -2.761 6.566 7.379 Atomic orbital electron populations 1.21771 0.96077 1.00775 0.98206 1.21592 0.94209 0.90571 0.90208 1.22163 1.00299 0.96636 0.98332 1.43979 1.47216 1.08115 1.16642 1.20309 1.44939 0.82152 0.98592 0.86133 1.26018 0.96438 1.03633 0.94698 1.70158 1.45070 1.35708 1.02221 0.85022 0.77385 0.77997 0.79072 1.17698 1.21088 1.21137 1.20146 0.82130 0.86640 0.86438 1.90559 1.61678 1.18052 1.81270 1.22219 0.97704 0.96511 0.93318 1.22730 0.93011 0.95974 1.02430 1.22769 0.97229 0.98670 0.96827 1.22437 0.93250 0.99945 0.99234 1.23386 0.92281 0.98033 0.83683 0.91848 1.88752 1.23250 1.88784 1.29835 1.23634 0.85329 0.95463 0.98438 1.23351 0.97767 0.99450 0.97168 0.96721 0.93272 0.92280 0.87392 0.94252 0.94682 0.93813 0.92493 0.89453 0.91321 0.93223 0.88551 0.90530 0.89197 0.94183 0.86226 0.90252 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 8.59 71.98 0.62 -4.39 16 2 C 0.14 6.66 2.82 44.99 0.13 6.78 16 3 C -0.12 -5.46 7.56 71.98 0.54 -4.91 16 4 N -0.44 -21.38 2.71 -613.12 -1.66 -23.04 16 5 C -0.33 -15.33 6.37 84.04 0.54 -14.80 16 6 H 0.12 5.12 4.26 -2.91 -0.01 5.11 16 7 C -0.01 -0.35 4.78 84.93 0.41 0.05 16 8 N -0.89 -43.34 8.00 21.66 0.17 -43.17 16 9 Si 0.98 37.07 29.55 68.60 2.03 39.09 16 10 H -0.25 -8.89 7.11 99.48 0.71 -8.19 16 11 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.29 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.46 21.46 6.43 87.66 0.56 22.03 16 14 O -0.63 -32.30 10.74 -3.06 -0.03 -32.34 16 15 C -0.09 -3.59 0.46 -51.42 -0.02 -3.62 16 16 C -0.10 -3.50 4.96 32.19 0.16 -3.34 16 17 C -0.12 -3.43 6.93 32.45 0.22 -3.21 16 18 C -0.11 -3.25 6.55 31.65 0.21 -3.04 16 19 C 0.08 3.08 3.91 31.64 0.12 3.20 16 20 H 0.06 2.71 6.76 -2.38 -0.02 2.69 16 21 O -0.39 -13.53 11.03 -148.98 -1.64 -15.18 16 22 C 0.05 1.51 7.72 72.66 0.56 2.07 16 23 C -0.14 -4.74 4.79 31.83 0.15 -4.58 16 24 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 2.84 5.97 -2.39 -0.01 2.83 16 27 H 0.11 5.69 5.68 -2.38 -0.01 5.67 16 28 H 0.04 1.94 6.77 -2.38 -0.02 1.93 16 29 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 2.14 6.63 -2.39 -0.02 2.12 16 31 H 0.26 12.33 8.31 -92.70 -0.77 11.56 16 32 H 0.09 2.53 7.24 -2.39 -0.02 2.52 16 33 H 0.07 2.67 6.44 -2.39 -0.02 2.65 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.09 2.35 8.00 -2.38 -0.02 2.33 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 2.96 8.14 -2.38 -0.02 2.94 16 40 H 0.08 3.00 6.29 -2.39 -0.02 2.99 16 41 H 0.10 2.88 7.24 -2.39 -0.02 2.86 16 Total: -1.00 -55.64 299.94 4.09 -51.55 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 1.02 Total: 30.82 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 4.20 Total: -7.75 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -1.49 Total: -66.20 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.68 Total: -47.51 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.09 kcal Total: -55.64 4.09 -51.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687409146.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.113 kcal (2) G-P(sol) polarization free energy of solvation -55.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds