Wall clock time and date at job start Mon Mar 30 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 N 1.46498 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99817 * 265.97594 * 4 3 2 6 6 H 1.08004 * 119.99948 * 145.95820 * 5 4 3 7 7 C 1.38949 * 119.99938 * 325.95767 * 5 4 3 8 8 N 1.31411 * 120.00004 * 338.09699 * 7 5 4 9 9 Si 1.86797 * 119.99899 * 158.10087 * 7 5 4 10 10 H 1.48500 * 109.47478 * 59.99921 * 9 7 5 11 11 H 1.48502 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47093 * 299.99625 * 9 7 5 13 13 C 1.34775 * 120.00328 * 85.97621 * 4 3 2 14 14 O 1.21293 * 119.99914 * 359.97438 * 13 4 3 15 15 C 1.50703 * 120.00235 * 180.02562 * 13 4 3 16 16 C 1.51079 * 110.61727 * 291.28992 * 15 13 4 17 17 C 1.54961 * 104.87828 * 276.40386 * 16 15 13 18 18 C 1.56256 * 105.87074 * 353.56002 * 17 16 15 19 19 C 1.50708 * 101.85597 * 335.02282 * 18 17 16 20 20 H 1.08996 * 108.30677 * 292.16801 * 19 18 17 21 21 O 1.39678 * 127.82032 * 158.71809 * 19 18 17 22 22 C 1.46166 * 103.81570 * 198.35458 * 21 19 18 23 23 C 1.51586 * 110.62405 * 71.43277 * 15 13 4 24 24 H 1.08996 * 109.47148 * 60.00342 * 1 2 3 25 25 H 1.09000 * 109.47194 * 300.00264 * 1 2 3 26 26 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47148 * 119.99658 * 2 1 3 28 28 H 1.09000 * 109.47194 * 239.99736 * 2 1 3 29 29 H 1.09005 * 109.47106 * 299.99767 * 3 2 1 30 30 H 1.09000 * 109.47389 * 59.99855 * 3 2 1 31 31 H 0.96997 * 119.99917 * 180.02562 * 8 7 5 32 32 H 1.08998 * 110.43015 * 35.81033 * 16 15 13 33 33 H 1.09005 * 110.42594 * 158.29436 * 16 15 13 34 34 H 1.08998 * 110.54885 * 234.25991 * 17 16 15 35 35 H 1.09001 * 109.86973 * 112.49363 * 17 16 15 36 36 H 1.08998 * 110.94865 * 216.88082 * 18 17 16 37 37 H 1.08995 * 110.95011 * 93.16408 * 18 17 16 38 38 H 1.08999 * 110.02997 * 147.30870 * 22 21 19 39 39 H 1.09006 * 110.03113 * 268.74199 * 22 21 19 40 40 H 1.08998 * 110.85705 * 202.80034 * 23 15 13 41 41 H 1.09003 * 110.85918 * 326.44554 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5257 1.1835 6 1 5.1322 1.0090 1.2998 7 6 3.6751 2.2747 2.2341 8 7 2.8007 3.2262 1.9954 9 14 4.2249 1.9293 3.9856 10 1 5.6930 2.1260 4.0916 11 1 3.5330 2.8591 4.9140 12 1 3.8860 0.5285 4.3435 13 6 4.1784 1.3608 -1.1652 14 8 3.5715 1.2868 -2.2128 15 6 5.6854 1.3603 -1.1658 16 6 6.2181 2.7102 -0.7458 17 6 6.2017 3.5643 -2.0387 18 6 5.8049 2.5868 -3.1914 19 6 6.2456 1.2572 -2.6354 20 1 7.3343 1.2520 -2.5831 21 8 5.8055 -0.0151 -3.0075 22 6 6.2007 -0.8634 -1.8847 23 6 6.2191 0.0500 -0.6214 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 2.4409 3.7493 2.7288 32 1 5.5772 3.1514 0.0176 33 1 7.2404 2.6185 -0.3789 34 1 7.1871 3.9894 -2.2289 35 1 5.4611 4.3590 -1.9484 36 1 6.3454 2.8248 -4.1075 37 1 4.7283 2.6008 -3.3610 38 1 5.4780 -1.6686 -1.7528 39 1 7.1936 -1.2772 -2.0608 40 1 7.2348 0.1712 -0.2449 41 1 5.5615 -0.3452 0.1529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687409218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:12 Heat of formation + Delta-G solvation = -64.335269 kcal Electronic energy + Delta-G solvation = -22670.268709 eV Core-core repulsion = 19550.775242 eV Total energy + Delta-G solvation = -3119.493466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84315 -37.65782 -35.34824 -34.76009 -32.82518 -31.78157 -30.75842 -27.21667 -26.91242 -25.73400 -24.51048 -21.77323 -21.54766 -20.24160 -19.85893 -18.63855 -17.03111 -16.25780 -15.19612 -15.06703 -14.82336 -14.49384 -14.44791 -13.88108 -13.49134 -13.39856 -13.21278 -12.39494 -12.20178 -12.02914 -11.85236 -11.61626 -11.48523 -11.27016 -11.05560 -10.98022 -10.86787 -10.66995 -10.60034 -10.35242 -10.16653 -10.13176 -9.90377 -9.68483 -9.59778 -9.01669 -8.85965 -8.12668 -7.45662 -6.35880 -4.01350 3.09970 3.19224 3.20918 3.90680 4.02061 4.12217 4.79894 4.97623 5.14014 5.17447 5.38069 5.45385 5.56909 5.77743 5.78485 5.82806 5.84926 5.89692 5.93957 6.03706 6.18489 6.21602 6.31576 6.33815 6.45645 6.52037 6.56968 6.60577 6.69068 6.74573 6.80647 6.87145 6.94090 7.09240 7.18099 7.39454 7.51088 7.54582 7.97035 8.41952 9.11116 9.60931 10.04219 10.64478 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.009188 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.817383 B = 3046.582566 C = 3694.146895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.115 3.885 4 N -0.440 5.440 5 C -0.335 4.335 6 H 0.092 0.908 7 C 0.043 3.957 8 N -0.858 5.858 9 Si 0.907 3.093 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.493 3.507 14 O -0.586 6.586 15 C -0.103 4.103 16 C -0.102 4.102 17 C -0.117 4.117 18 C -0.111 4.111 19 C 0.083 3.917 20 H 0.043 0.957 21 O -0.343 6.343 22 C 0.046 3.954 23 C -0.136 4.136 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.269 0.731 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 -2.720 -1.624 5.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.158 5.158 5 C -0.462 4.462 6 H 0.110 0.890 7 C -0.163 4.163 8 N -0.495 5.495 9 Si 0.733 3.267 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.471 6.471 15 C -0.107 4.107 16 C -0.139 4.139 17 C -0.155 4.155 18 C -0.149 4.149 19 C 0.023 3.977 20 H 0.061 0.939 21 O -0.261 6.261 22 C -0.030 4.030 23 C -0.173 4.173 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.474 -2.657 -2.205 5.651 hybrid contribution 0.445 -0.159 1.342 1.423 sum 4.919 -2.816 -0.863 5.734 Atomic orbital electron populations 1.21649 0.96723 1.00325 1.01313 1.21829 0.94598 0.99693 1.01113 1.21434 0.81630 0.94348 1.03476 1.43398 1.04491 1.63276 1.04633 1.19454 1.07274 1.29868 0.89649 0.89009 1.25273 0.97183 0.93791 1.00046 1.69920 1.30084 1.16832 1.32630 0.86323 0.79020 0.78539 0.82795 1.19779 1.20985 1.19925 1.19770 0.87954 0.80413 0.83806 1.90498 1.69645 1.55241 1.31694 1.21951 0.95552 0.95381 0.97784 1.21500 1.00848 0.93507 0.98084 1.22693 1.00631 0.98090 0.94061 1.21949 1.04416 0.91451 0.97047 1.22265 0.95572 0.86327 0.93509 0.93935 1.88497 1.80605 1.17639 1.39408 1.24006 0.99310 0.94235 0.85455 1.22457 1.01797 0.95103 0.97980 0.93184 0.93071 0.93750 0.92559 0.92997 0.93263 0.87491 0.92095 0.88214 0.92318 0.92205 0.91470 0.92270 0.88260 0.90119 0.92509 0.90836 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.16 0.37 -2.10 16 2 C -0.13 -2.79 6.24 -26.73 -0.17 -2.95 16 3 C 0.11 2.74 4.93 -4.04 -0.02 2.72 16 4 N -0.44 -10.74 2.55 -114.81 -0.29 -11.04 16 5 C -0.33 -8.03 6.61 -14.93 -0.10 -8.13 16 6 H 0.09 2.11 5.39 -52.48 -0.28 1.83 16 7 C 0.04 1.03 4.94 -17.47 -0.09 0.94 16 8 N -0.86 -21.83 11.30 55.50 0.63 -21.20 16 9 Si 0.91 18.84 29.61 -169.99 -5.03 13.81 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 13 C 0.49 11.80 5.50 -10.98 -0.06 11.74 16 14 O -0.59 -15.51 13.25 -11.30 -0.15 -15.66 16 15 C -0.10 -2.07 0.28 -154.82 -0.04 -2.12 16 16 C -0.10 -1.92 5.74 -26.66 -0.15 -2.07 16 17 C -0.12 -2.00 6.84 -23.95 -0.16 -2.16 16 18 C -0.11 -2.05 6.36 -26.13 -0.17 -2.22 16 19 C 0.08 1.58 2.90 -25.36 -0.07 1.51 16 20 H 0.04 0.73 8.01 -51.93 -0.42 0.31 16 21 O -0.34 -7.09 10.58 -48.89 -0.52 -7.60 16 22 C 0.05 0.79 7.59 38.71 0.29 1.08 16 23 C -0.14 -2.40 5.48 -25.90 -0.14 -2.54 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.24 7.55 -51.93 -0.39 0.85 16 30 H 0.11 2.69 5.32 -51.93 -0.28 2.41 16 31 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 32 H 0.10 2.19 6.44 -51.93 -0.33 1.85 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 2.15 6.04 -51.93 -0.31 1.84 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.73 6.24 -51.93 -0.32 1.41 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -28.11 312.92 -7.71 -35.82 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.55 Total: 7.46 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.51 Total: -6.30 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.33 Total: -32.24 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.67 Total: -23.26 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.11 -7.71 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687409218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.518 kcal (2) G-P(sol) polarization free energy of solvation -28.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds