Wall clock time and date at job start Mon Mar 30 2020 04:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46948 * 2 1 4 4 N 1.46498 * 109.47068 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99817 * 265.97594 * 4 3 2 6 6 H 1.08004 * 119.99948 * 145.95820 * 5 4 3 7 7 C 1.38949 * 119.99938 * 325.95767 * 5 4 3 8 8 N 1.31411 * 120.00004 * 338.09699 * 7 5 4 9 9 Si 1.86797 * 119.99899 * 158.10087 * 7 5 4 10 10 H 1.48500 * 109.47478 * 59.99921 * 9 7 5 11 11 H 1.48502 * 109.47046 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47093 * 299.99625 * 9 7 5 13 13 C 1.34775 * 120.00328 * 85.97621 * 4 3 2 14 14 O 1.21293 * 119.99914 * 359.97438 * 13 4 3 15 15 C 1.50703 * 120.00235 * 180.02562 * 13 4 3 16 16 C 1.51079 * 110.61727 * 291.28992 * 15 13 4 17 17 C 1.54961 * 104.87828 * 276.40386 * 16 15 13 18 18 C 1.56256 * 105.87074 * 353.56002 * 17 16 15 19 19 C 1.50708 * 101.85597 * 335.02282 * 18 17 16 20 20 H 1.08996 * 108.30677 * 292.16801 * 19 18 17 21 21 O 1.39678 * 127.82032 * 158.71809 * 19 18 17 22 22 C 1.46166 * 103.81570 * 198.35458 * 21 19 18 23 23 C 1.51586 * 110.62405 * 71.43277 * 15 13 4 24 24 H 1.08996 * 109.47148 * 60.00342 * 1 2 3 25 25 H 1.09000 * 109.47194 * 300.00264 * 1 2 3 26 26 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47148 * 119.99658 * 2 1 3 28 28 H 1.09000 * 109.47194 * 239.99736 * 2 1 3 29 29 H 1.09005 * 109.47106 * 299.99767 * 3 2 1 30 30 H 1.09000 * 109.47389 * 59.99855 * 3 2 1 31 31 H 0.96997 * 119.99917 * 180.02562 * 8 7 5 32 32 H 1.08998 * 110.43015 * 35.81033 * 16 15 13 33 33 H 1.09005 * 110.42594 * 158.29436 * 16 15 13 34 34 H 1.08998 * 110.54885 * 234.25991 * 17 16 15 35 35 H 1.09001 * 109.86973 * 112.49363 * 17 16 15 36 36 H 1.08998 * 110.94865 * 216.88082 * 18 17 16 37 37 H 1.08995 * 110.95011 * 93.16408 * 18 17 16 38 38 H 1.08999 * 110.02997 * 147.30870 * 22 21 19 39 39 H 1.09006 * 110.03113 * 268.74199 * 22 21 19 40 40 H 1.08998 * 110.85705 * 202.80034 * 23 15 13 41 41 H 1.09003 * 110.85918 * 326.44554 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5257 1.1835 6 1 5.1322 1.0090 1.2998 7 6 3.6751 2.2747 2.2341 8 7 2.8007 3.2262 1.9954 9 14 4.2249 1.9293 3.9856 10 1 5.6930 2.1260 4.0916 11 1 3.5330 2.8591 4.9140 12 1 3.8860 0.5285 4.3435 13 6 4.1784 1.3608 -1.1652 14 8 3.5715 1.2868 -2.2128 15 6 5.6854 1.3603 -1.1658 16 6 6.2181 2.7102 -0.7458 17 6 6.2017 3.5643 -2.0387 18 6 5.8049 2.5868 -3.1914 19 6 6.2456 1.2572 -2.6354 20 1 7.3343 1.2520 -2.5831 21 8 5.8055 -0.0151 -3.0075 22 6 6.2007 -0.8634 -1.8847 23 6 6.2191 0.0500 -0.6214 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 2.4409 3.7493 2.7288 32 1 5.5772 3.1514 0.0176 33 1 7.2404 2.6185 -0.3789 34 1 7.1871 3.9894 -2.2289 35 1 5.4611 4.3590 -1.9484 36 1 6.3454 2.8248 -4.1075 37 1 4.7283 2.6008 -3.3610 38 1 5.4780 -1.6686 -1.7528 39 1 7.1936 -1.2772 -2.0608 40 1 7.2348 0.1712 -0.2449 41 1 5.5615 -0.3452 0.1529 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687409218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:12 Heat of formation + Delta-G solvation = -79.661564 kcal Electronic energy + Delta-G solvation = -22670.933307 eV Core-core repulsion = 19550.775242 eV Total energy + Delta-G solvation = -3120.158064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.39556 -39.42177 -36.96631 -36.51964 -34.52701 -33.47465 -32.38674 -28.69282 -28.35785 -27.48315 -26.30406 -23.30728 -23.01967 -21.96586 -21.34275 -20.42353 -18.70665 -17.93032 -16.79649 -16.69539 -16.38956 -16.17065 -16.12285 -15.48277 -15.15308 -14.87846 -14.85904 -13.99091 -13.85918 -13.48986 -13.42842 -13.28894 -13.09680 -12.92824 -12.61245 -12.56101 -12.41799 -12.25531 -12.10788 -12.03665 -11.82988 -11.61687 -11.49361 -11.32100 -11.05824 -10.87109 -10.31026 -9.97098 -9.37062 -8.21514 -5.92273 1.44950 1.51186 1.57794 2.16318 2.36165 2.52812 3.07292 3.18236 3.71997 3.74980 3.95517 4.11811 4.16636 4.17921 4.29157 4.36321 4.39317 4.46234 4.48912 4.58964 4.67453 4.76762 4.79470 4.96300 4.96500 4.98563 5.06852 5.07499 5.13560 5.19943 5.26728 5.29733 5.38275 5.43654 5.53669 5.59424 5.63089 6.07549 6.13703 6.53143 7.23385 7.74032 8.18163 8.80208 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.009188 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.817383 B = 3046.582566 C = 3694.146895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 C 0.115 3.885 4 N -0.451 5.451 5 C -0.339 4.339 6 H 0.104 0.896 7 C 0.002 3.998 8 N -0.893 5.893 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.271 1.271 13 C 0.480 3.520 14 O -0.622 6.622 15 C -0.109 4.109 16 C -0.100 4.100 17 C -0.110 4.110 18 C -0.114 4.114 19 C 0.081 3.919 20 H 0.078 0.922 21 O -0.377 6.377 22 C 0.045 3.955 23 C -0.132 4.132 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.021 0.979 30 H 0.095 0.905 31 H 0.268 0.732 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -3.598 -0.813 8.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C -0.009 4.009 4 N -0.169 5.169 5 C -0.466 4.466 6 H 0.122 0.878 7 C -0.200 4.200 8 N -0.531 5.531 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.270 3.730 14 O -0.509 6.509 15 C -0.112 4.112 16 C -0.138 4.138 17 C -0.147 4.147 18 C -0.152 4.152 19 C 0.022 3.978 20 H 0.095 0.905 21 O -0.296 6.296 22 C -0.031 4.031 23 C -0.170 4.170 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.128 0.872 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.933 -3.545 -1.386 7.909 hybrid contribution -0.363 0.140 1.023 1.095 sum 6.570 -3.405 -0.363 7.409 Atomic orbital electron populations 1.21603 0.93833 1.02243 1.01604 1.21696 0.97114 0.97184 1.00073 1.21369 0.82214 0.95921 1.01355 1.43656 1.04645 1.63259 1.05333 1.19759 1.07694 1.29729 0.89468 0.87838 1.26051 0.97235 0.93283 1.03432 1.70036 1.31559 1.17911 1.33572 0.85318 0.79101 0.78070 0.77970 1.18441 1.21475 1.19600 1.20585 0.90065 0.79375 0.82988 1.90469 1.71008 1.56623 1.32804 1.22016 0.92433 0.97069 0.99704 1.21468 1.01744 0.92686 0.97859 1.22682 1.02276 0.97060 0.92713 1.21952 1.02049 0.92249 0.98933 1.22446 0.97205 0.85904 0.92238 0.90479 1.88460 1.81517 1.18657 1.40921 1.24191 1.01245 0.93466 0.84206 1.22489 1.03163 0.93529 0.97806 0.93215 0.92480 0.90974 0.92637 0.94705 0.96002 0.88715 0.92194 0.91981 0.88900 0.88107 0.93315 0.89399 0.92663 0.90757 0.88496 0.87248 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.91 71.98 0.71 -3.93 16 2 C -0.12 -5.22 6.24 30.59 0.19 -5.03 16 3 C 0.12 5.77 4.93 86.38 0.43 6.19 16 4 N -0.45 -22.74 2.55 -635.53 -1.62 -24.36 16 5 C -0.34 -16.38 6.61 84.04 0.56 -15.82 16 6 H 0.10 4.67 5.39 -2.91 -0.02 4.65 16 7 C 0.00 0.11 4.94 84.93 0.42 0.53 16 8 N -0.89 -46.56 11.30 21.66 0.24 -46.32 16 9 Si 0.97 38.15 29.61 68.60 2.03 40.18 16 10 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 11 H -0.29 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 13 C 0.48 23.65 5.50 87.66 0.48 24.13 16 14 O -0.62 -34.51 13.25 13.03 0.17 -34.34 16 15 C -0.11 -4.25 0.28 -52.38 -0.01 -4.27 16 16 C -0.10 -3.59 5.74 30.64 0.18 -3.42 16 17 C -0.11 -3.57 6.84 32.40 0.22 -3.35 16 18 C -0.11 -4.11 6.36 30.98 0.20 -3.92 16 19 C 0.08 2.93 2.90 31.49 0.09 3.02 16 20 H 0.08 2.28 8.01 -2.39 -0.02 2.26 16 21 O -0.38 -15.09 10.58 -121.48 -1.29 -16.37 16 22 C 0.04 1.41 7.59 72.99 0.55 1.97 16 23 C -0.13 -4.36 5.48 31.14 0.17 -4.19 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.02 1.17 7.55 -2.38 -0.02 1.15 16 30 H 0.10 4.98 5.32 -2.39 -0.01 4.97 16 31 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 32 H 0.06 2.72 6.44 -2.39 -0.02 2.70 16 33 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.05 2.48 6.04 -2.39 -0.01 2.47 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.11 2.80 8.14 -2.39 -0.02 2.79 16 41 H 0.07 2.68 6.24 -2.39 -0.01 2.67 16 Total: -1.00 -63.73 312.92 4.73 -59.00 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 1.01 Total: 30.28 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.18 Total: -8.07 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.38 Total: -70.68 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -1.11 Total: -50.71 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -63.73 4.73 -59.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687409218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.659 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds