Wall clock time and date at job start Mon Mar 30 2020 04:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47327 * 2 1 4 4 N 1.46500 * 109.47292 * 120.00073 * 2 1 3 5 5 C 1.37098 * 119.99800 * 112.65126 * 4 2 1 6 6 H 1.08002 * 120.00038 * 200.22371 * 5 4 2 7 7 C 1.38955 * 120.00104 * 20.23489 * 5 4 2 8 8 N 1.31409 * 120.00025 * 20.89462 * 7 5 4 9 9 Si 1.86795 * 119.99964 * 200.89660 * 7 5 4 10 10 H 1.48501 * 109.47374 * 89.99686 * 9 7 5 11 11 H 1.48506 * 109.47356 * 209.99798 * 9 7 5 12 12 H 1.48500 * 109.47270 * 329.99510 * 9 7 5 13 13 C 1.34769 * 119.99847 * 292.93031 * 4 2 1 14 14 O 1.21299 * 119.99717 * 180.72004 * 13 4 2 15 15 C 1.50700 * 120.00494 * 0.71802 * 13 4 2 16 16 H 1.08999 * 115.55205 * 4.98024 * 15 13 4 17 17 C 1.53069 * 117.50833 * 150.68282 * 15 13 4 18 18 C 1.52703 * 59.92650 * 107.46861 * 17 15 13 19 19 C 1.53251 * 117.87663 * 107.77661 * 18 17 15 20 20 C 1.53327 * 108.48692 * 196.24560 * 19 18 17 21 21 O 1.42868 * 109.32543 * 306.03939 * 20 19 18 22 22 C 1.42860 * 114.52941 * 64.35778 * 21 20 19 23 23 C 1.53248 * 117.88152 * 252.22302 * 18 17 15 24 24 H 1.09000 * 109.46941 * 277.05071 * 1 2 3 25 25 H 1.09001 * 109.47193 * 37.04988 * 1 2 3 26 26 H 1.08999 * 109.47181 * 157.05240 * 1 2 3 27 27 H 1.09006 * 109.46907 * 240.00071 * 2 1 3 28 28 H 1.08999 * 109.47262 * 195.04996 * 3 2 1 29 29 H 1.09002 * 109.46738 * 315.04934 * 3 2 1 30 30 H 1.08999 * 109.46994 * 75.04812 * 3 2 1 31 31 H 0.97002 * 119.99894 * 180.02562 * 8 7 5 32 32 H 1.08994 * 117.50563 * 214.93961 * 17 15 13 33 33 H 1.08996 * 117.50280 * 359.96845 * 17 15 13 34 34 H 1.08999 * 109.63317 * 315.94006 * 19 18 17 35 35 H 1.08995 * 109.63655 * 76.54539 * 19 18 17 36 36 H 1.08999 * 109.49611 * 186.07889 * 20 19 18 37 37 H 1.09006 * 109.52359 * 66.00818 * 20 19 18 38 38 H 1.09010 * 109.49756 * 175.69248 * 22 21 20 39 39 H 1.08992 * 109.49706 * 55.59777 * 22 21 20 40 40 H 1.09001 * 109.63358 * 283.45545 * 23 18 17 41 41 H 1.08998 * 109.63484 * 44.05231 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.6780 -1.8865 1.0759 6 1 2.7505 -2.5508 1.9243 7 6 3.2534 -2.2436 -0.1374 8 7 3.5354 -1.3196 -1.0282 9 14 3.6260 -4.0373 -0.5023 10 1 2.4504 -4.6635 -1.1589 11 1 4.8020 -4.1250 -1.4049 12 1 3.9219 -4.7495 0.7667 13 6 1.8143 -0.1532 2.4150 14 8 2.2300 -0.7184 3.4044 15 6 1.0695 1.1501 2.5489 16 1 0.6553 1.5521 1.6243 17 6 0.2777 1.3827 3.8381 18 6 1.5753 2.1480 3.5884 19 6 1.4743 3.6406 3.2557 20 6 2.8098 4.0965 2.6562 21 8 3.8713 3.7485 3.5468 22 6 4.0512 2.3438 3.7348 23 6 2.8068 1.7591 4.4135 24 1 -0.3633 0.1261 1.0199 25 1 -0.3633 0.8202 -0.6192 26 1 -0.3633 -0.9463 -0.4007 27 1 1.8933 -0.5139 -0.8901 28 1 3.0968 1.4543 -0.2668 29 1 1.4754 2.0275 -0.7261 30 1 1.9112 1.8735 0.9929 31 1 3.9367 -1.5690 -1.8753 32 1 -0.6570 1.9381 3.7614 33 1 0.2951 0.5929 4.5889 34 1 0.6745 3.8013 2.5328 35 1 1.2691 4.2055 4.1649 36 1 2.7944 5.1770 2.5131 37 1 2.9648 3.6047 1.6958 38 1 4.9243 2.1698 4.3640 39 1 4.1977 1.8631 2.7676 40 1 2.7151 2.1639 5.4214 41 1 2.8899 0.6732 4.4580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689973100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:20 Heat of formation + Delta-G solvation = -33.723476 kcal Electronic energy + Delta-G solvation = -22490.223872 eV Core-core repulsion = 19372.057832 eV Total energy + Delta-G solvation = -3118.166039 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20522 -38.24059 -36.14457 -35.20643 -32.52448 -30.86867 -30.27311 -29.68706 -26.54570 -25.43565 -23.56292 -23.37905 -22.32907 -20.69600 -19.29455 -17.91762 -17.22163 -15.81162 -15.75708 -15.58349 -14.88602 -14.62377 -14.15685 -13.98908 -13.63232 -13.25521 -13.09025 -12.87146 -12.64074 -12.24751 -12.18309 -11.81697 -11.68990 -11.32828 -11.26450 -11.13005 -10.96725 -10.52650 -10.41568 -10.38276 -10.31876 -10.10221 -9.98267 -9.65381 -9.31052 -8.88470 -8.85050 -8.26882 -7.61637 -6.32620 -3.88088 3.11242 3.23937 3.28599 3.52112 4.08905 4.18434 4.41344 4.66875 4.96797 5.08215 5.19599 5.27349 5.32100 5.40520 5.53679 5.70295 5.78993 5.83133 5.86582 5.94960 6.05295 6.06854 6.10576 6.11581 6.13907 6.26433 6.39317 6.46981 6.47840 6.53372 6.57752 6.62593 6.75972 6.94555 7.19676 7.43682 7.54964 7.63386 8.15104 8.52044 9.15279 9.44529 10.01205 10.64799 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.006887 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.941703 B = 4064.496307 C = 4171.720804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 C -0.176 4.176 4 N -0.429 5.429 5 C -0.296 4.296 6 H 0.100 0.900 7 C 0.025 3.975 8 N -0.870 5.870 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.479 3.521 14 O -0.586 6.586 15 C -0.175 4.175 16 H 0.131 0.869 17 C -0.154 4.154 18 C -0.101 4.101 19 C -0.116 4.116 20 C 0.062 3.938 21 O -0.390 6.390 22 C 0.066 3.934 23 C -0.141 4.141 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.148 0.852 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.268 0.732 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 8.453 2.120 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 C -0.233 4.233 4 N -0.145 5.145 5 C -0.424 4.424 6 H 0.118 0.882 7 C -0.177 4.177 8 N -0.510 5.510 9 Si 0.749 3.251 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.268 3.732 14 O -0.473 6.473 15 C -0.196 4.196 16 H 0.148 0.852 17 C -0.192 4.192 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.015 4.015 21 O -0.309 6.309 22 C -0.010 4.010 23 C -0.178 4.178 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.164 0.836 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.319 8.275 2.461 9.653 hybrid contribution -0.163 -0.921 -0.625 1.125 sum -4.482 7.354 1.836 8.806 Atomic orbital electron populations 1.22524 0.98159 1.00884 1.01196 1.21656 0.90644 0.93181 0.94248 1.22736 1.02242 0.96773 1.01589 1.43632 1.47869 1.19410 1.03625 1.19723 1.30618 0.93814 0.98262 0.88205 1.25227 0.96247 0.99535 0.96641 1.69738 1.40222 1.32057 1.09015 0.85974 0.77811 0.82689 0.78593 1.20418 1.21009 1.19403 1.19083 0.84379 0.85532 0.84173 1.90350 1.56370 1.63354 1.37186 1.23054 1.04070 0.97649 0.94794 0.85195 1.22977 0.94098 1.02665 0.99450 1.21265 0.96152 0.91643 1.01157 1.21812 0.98310 0.93834 1.01370 1.22574 0.86372 0.99830 0.92709 1.87775 1.52592 1.24220 1.66344 1.22579 0.97580 0.80490 1.00369 1.22220 0.92281 1.05913 0.97343 0.92892 0.93062 0.93152 0.83593 0.92085 0.93625 0.91315 0.92158 0.89092 0.88200 0.91099 0.90834 0.89427 0.92810 0.89333 0.92780 0.91963 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 8.87 37.16 0.33 -2.78 16 2 C 0.11 2.33 2.56 -67.93 -0.17 2.15 16 3 C -0.18 -3.39 8.73 37.16 0.32 -3.06 16 4 N -0.43 -10.64 2.57 -107.72 -0.28 -10.92 16 5 C -0.30 -8.05 9.28 -14.93 -0.14 -8.19 16 6 H 0.10 2.86 7.43 -52.49 -0.39 2.47 16 7 C 0.03 0.64 5.00 -17.47 -0.09 0.56 16 8 N -0.87 -22.33 10.58 55.50 0.59 -21.74 16 9 Si 0.92 20.31 29.60 -169.99 -5.03 15.28 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.48 11.37 6.43 -10.99 -0.07 11.30 16 14 O -0.59 -15.49 13.29 5.54 0.07 -15.42 16 15 C -0.17 -3.27 2.36 -91.88 -0.22 -3.48 16 16 H 0.13 2.27 3.85 -51.93 -0.20 2.07 16 17 C -0.15 -2.53 9.53 -26.85 -0.26 -2.79 16 18 C -0.10 -1.69 1.98 -154.55 -0.31 -2.00 16 19 C -0.12 -1.59 5.92 -26.43 -0.16 -1.75 16 20 C 0.06 0.89 6.84 37.33 0.26 1.15 16 21 O -0.39 -6.56 10.69 -35.23 -0.38 -6.94 16 22 C 0.07 1.17 6.84 37.33 0.26 1.42 16 23 C -0.14 -2.53 5.57 -26.43 -0.15 -2.68 16 24 H 0.05 0.96 5.71 -51.93 -0.30 0.66 16 25 H 0.05 0.79 7.69 -51.93 -0.40 0.39 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.15 3.54 4.73 -51.93 -0.25 3.30 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.04 0.74 7.77 -51.93 -0.40 0.34 16 30 H 0.07 1.27 2.96 -51.93 -0.15 1.11 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 32 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.77 7.96 -51.93 -0.41 1.36 16 34 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.82 7.18 -51.93 -0.37 0.44 16 38 H 0.09 1.42 8.14 -51.92 -0.42 0.99 16 39 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.12 2.62 4.79 -51.93 -0.25 2.37 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -28.74 309.57 -6.81 -35.55 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.06 Total: 9.67 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.39 Total: -10.15 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.31 Total: -32.66 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.30 Total: -22.35 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.74 -6.81 -35.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689973100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.824 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds