Wall clock time and date at job start Mon Mar 30 2020 04:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47327 * 2 1 4 4 N 1.46500 * 109.47292 * 120.00073 * 2 1 3 5 5 C 1.37098 * 119.99800 * 112.65126 * 4 2 1 6 6 H 1.08002 * 120.00038 * 200.22371 * 5 4 2 7 7 C 1.38955 * 120.00104 * 20.23489 * 5 4 2 8 8 N 1.31409 * 120.00025 * 20.89462 * 7 5 4 9 9 Si 1.86795 * 119.99964 * 200.89660 * 7 5 4 10 10 H 1.48501 * 109.47374 * 89.99686 * 9 7 5 11 11 H 1.48506 * 109.47356 * 209.99798 * 9 7 5 12 12 H 1.48500 * 109.47270 * 329.99510 * 9 7 5 13 13 C 1.34769 * 119.99847 * 292.93031 * 4 2 1 14 14 O 1.21299 * 119.99717 * 180.72004 * 13 4 2 15 15 C 1.50700 * 120.00494 * 0.71802 * 13 4 2 16 16 H 1.08999 * 115.55205 * 4.98024 * 15 13 4 17 17 C 1.53069 * 117.50833 * 150.68282 * 15 13 4 18 18 C 1.52703 * 59.92650 * 107.46861 * 17 15 13 19 19 C 1.53251 * 117.87663 * 107.77661 * 18 17 15 20 20 C 1.53327 * 108.48692 * 196.24560 * 19 18 17 21 21 O 1.42868 * 109.32543 * 306.03939 * 20 19 18 22 22 C 1.42860 * 114.52941 * 64.35778 * 21 20 19 23 23 C 1.53248 * 117.88152 * 252.22302 * 18 17 15 24 24 H 1.09000 * 109.46941 * 277.05071 * 1 2 3 25 25 H 1.09001 * 109.47193 * 37.04988 * 1 2 3 26 26 H 1.08999 * 109.47181 * 157.05240 * 1 2 3 27 27 H 1.09006 * 109.46907 * 240.00071 * 2 1 3 28 28 H 1.08999 * 109.47262 * 195.04996 * 3 2 1 29 29 H 1.09002 * 109.46738 * 315.04934 * 3 2 1 30 30 H 1.08999 * 109.46994 * 75.04812 * 3 2 1 31 31 H 0.97002 * 119.99894 * 180.02562 * 8 7 5 32 32 H 1.08994 * 117.50563 * 214.93961 * 17 15 13 33 33 H 1.08996 * 117.50280 * 359.96845 * 17 15 13 34 34 H 1.08999 * 109.63317 * 315.94006 * 19 18 17 35 35 H 1.08995 * 109.63655 * 76.54539 * 19 18 17 36 36 H 1.08999 * 109.49611 * 186.07889 * 20 19 18 37 37 H 1.09006 * 109.52359 * 66.00818 * 20 19 18 38 38 H 1.09010 * 109.49756 * 175.69248 * 22 21 20 39 39 H 1.08992 * 109.49706 * 55.59777 * 22 21 20 40 40 H 1.09001 * 109.63358 * 283.45545 * 23 18 17 41 41 H 1.08998 * 109.63484 * 44.05231 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.6780 -1.8865 1.0759 6 1 2.7505 -2.5508 1.9243 7 6 3.2534 -2.2436 -0.1374 8 7 3.5354 -1.3196 -1.0282 9 14 3.6260 -4.0373 -0.5023 10 1 2.4504 -4.6635 -1.1589 11 1 4.8020 -4.1250 -1.4049 12 1 3.9219 -4.7495 0.7667 13 6 1.8143 -0.1532 2.4150 14 8 2.2300 -0.7184 3.4044 15 6 1.0695 1.1501 2.5489 16 1 0.6553 1.5521 1.6243 17 6 0.2777 1.3827 3.8381 18 6 1.5753 2.1480 3.5884 19 6 1.4743 3.6406 3.2557 20 6 2.8098 4.0965 2.6562 21 8 3.8713 3.7485 3.5468 22 6 4.0512 2.3438 3.7348 23 6 2.8068 1.7591 4.4135 24 1 -0.3633 0.1261 1.0199 25 1 -0.3633 0.8202 -0.6192 26 1 -0.3633 -0.9463 -0.4007 27 1 1.8933 -0.5139 -0.8901 28 1 3.0968 1.4543 -0.2668 29 1 1.4754 2.0275 -0.7261 30 1 1.9112 1.8735 0.9929 31 1 3.9367 -1.5690 -1.8753 32 1 -0.6570 1.9381 3.7614 33 1 0.2951 0.5929 4.5889 34 1 0.6745 3.8013 2.5328 35 1 1.2691 4.2055 4.1649 36 1 2.7944 5.1770 2.5131 37 1 2.9648 3.6047 1.6958 38 1 4.9243 2.1698 4.3640 39 1 4.1977 1.8631 2.7676 40 1 2.7151 2.1639 5.4214 41 1 2.8899 0.6732 4.4580 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689973100.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:19 Heat of formation + Delta-G solvation = -50.941185 kcal Electronic energy + Delta-G solvation = -22490.970487 eV Core-core repulsion = 19372.057832 eV Total energy + Delta-G solvation = -3118.912655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.72665 -39.76245 -37.70067 -36.91151 -34.40753 -32.14195 -32.06256 -31.02656 -28.07231 -27.26265 -25.18849 -24.66651 -23.65253 -22.33006 -20.84304 -19.44913 -19.03858 -17.50531 -17.11137 -16.97580 -16.63201 -16.10872 -15.72944 -15.60786 -15.25392 -14.82782 -14.59489 -14.33857 -14.04606 -13.80572 -13.59398 -13.35452 -13.17694 -13.08223 -12.85545 -12.74075 -12.25037 -12.14766 -12.08173 -12.02533 -11.83025 -11.64170 -11.46677 -11.15870 -10.80360 -10.62401 -10.17966 -10.09133 -9.51916 -8.27865 -5.91992 1.33300 1.39942 1.50970 1.86655 2.26865 2.83162 2.93860 3.03526 3.19218 3.70571 3.82095 3.93740 3.96789 4.13152 4.18435 4.30812 4.31102 4.50510 4.52336 4.54610 4.72401 4.74951 4.77406 4.84436 4.85211 4.91410 4.98287 5.02994 5.05276 5.14038 5.22208 5.23697 5.27070 5.44137 5.48632 5.65623 5.76506 6.19614 6.26251 6.59029 7.19895 7.57794 8.14384 8.66465 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.006887 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.941703 B = 4064.496307 C = 4171.720804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 C -0.166 4.166 4 N -0.444 5.444 5 C -0.336 4.336 6 H 0.068 0.932 7 C -0.003 4.003 8 N -0.880 5.880 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.279 1.279 13 C 0.468 3.532 14 O -0.627 6.627 15 C -0.188 4.188 16 H 0.149 0.851 17 C -0.138 4.138 18 C -0.097 4.097 19 C -0.107 4.107 20 C 0.052 3.948 21 O -0.396 6.396 22 C 0.074 3.926 23 C -0.142 4.142 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.121 0.879 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.273 0.727 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.041 0.959 38 H 0.097 0.903 39 H 0.020 0.980 40 H 0.079 0.921 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 10.797 1.529 12.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 C -0.223 4.223 4 N -0.161 5.161 5 C -0.464 4.464 6 H 0.086 0.914 7 C -0.204 4.204 8 N -0.519 5.519 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.199 1.199 12 H -0.204 1.204 13 C 0.259 3.741 14 O -0.517 6.517 15 C -0.209 4.209 16 H 0.166 0.834 17 C -0.175 4.175 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.024 4.024 21 O -0.315 6.315 22 C -0.002 4.002 23 C -0.179 4.179 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.038 0.962 40 H 0.097 0.903 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.086 10.644 1.840 12.398 hybrid contribution 0.434 -1.644 -0.417 1.751 sum -5.651 9.000 1.423 10.722 Atomic orbital electron populations 1.22424 0.95299 1.02029 1.02107 1.21737 0.92947 0.93813 0.91942 1.22645 1.00645 0.95819 1.03213 1.43883 1.47997 1.19139 1.05096 1.19590 1.33183 0.95404 0.98213 0.91429 1.25887 0.95566 1.03043 0.95936 1.69845 1.39675 1.33307 1.09101 0.85110 0.78179 0.78181 0.77951 1.19171 1.19944 1.20398 1.19971 0.83965 0.86913 0.83267 1.90331 1.57953 1.64966 1.38404 1.22908 1.05523 0.95682 0.96745 0.83372 1.23092 0.95639 1.02024 0.96778 1.21453 0.95571 0.93414 0.99340 1.21863 0.98651 0.90908 1.03027 1.22875 0.86073 1.01811 0.91664 1.87770 1.53899 1.22873 1.66942 1.22394 0.98031 0.81149 0.98670 1.22117 0.93519 1.03542 0.98755 0.92643 0.89291 0.94007 0.86195 0.95241 0.89985 0.90312 0.91690 0.84874 0.90286 0.88246 0.88852 0.85953 0.94112 0.88455 0.96190 0.90289 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 8.87 71.98 0.64 -4.95 16 2 C 0.10 4.30 2.56 44.99 0.12 4.41 16 3 C -0.17 -6.20 8.73 71.98 0.63 -5.57 16 4 N -0.44 -22.86 2.57 -613.11 -1.57 -24.44 16 5 C -0.34 -19.23 9.28 84.04 0.78 -18.45 16 6 H 0.07 4.19 7.43 -2.91 -0.02 4.17 16 7 C 0.00 -0.18 5.00 84.93 0.43 0.24 16 8 N -0.88 -46.08 10.58 21.66 0.23 -45.85 16 9 Si 0.98 42.65 29.60 68.60 2.03 44.69 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.47 22.95 6.43 87.66 0.56 23.51 16 14 O -0.63 -35.20 13.29 -3.09 -0.04 -35.25 16 15 C -0.19 -6.79 2.36 -11.61 -0.03 -6.81 16 16 H 0.15 4.74 3.85 -2.39 -0.01 4.73 16 17 C -0.14 -4.19 9.53 30.52 0.29 -3.89 16 18 C -0.10 -3.04 1.98 -52.21 -0.10 -3.14 16 19 C -0.11 -2.47 5.92 30.79 0.18 -2.29 16 20 C 0.05 1.32 6.84 72.09 0.49 1.82 16 21 O -0.40 -12.62 10.69 -148.98 -1.59 -14.21 16 22 C 0.07 2.65 6.84 72.09 0.49 3.14 16 23 C -0.14 -5.12 5.57 30.79 0.17 -4.94 16 24 H 0.05 1.90 5.71 -2.39 -0.01 1.88 16 25 H 0.09 2.39 7.69 -2.39 -0.02 2.37 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.12 5.90 4.73 -2.38 -0.01 5.89 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 2.41 7.77 -2.39 -0.02 2.39 16 30 H 0.08 2.78 2.96 -2.39 -0.01 2.77 16 31 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 32 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 34 H 0.10 1.80 8.08 -2.39 -0.02 1.78 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.15 7.18 -2.38 -0.02 1.13 16 38 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.09 3.81 4.79 -2.39 -0.01 3.80 16 Total: -1.00 -67.01 309.57 4.73 -62.28 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 1.03 Total: 29.71 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.65 Total: -16.92 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -1.34 Total: -70.29 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.63 Total: -49.46 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.69 kcal Total: -67.01 4.73 -62.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689973100.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.335 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds