Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.50099 * 2 1 4 4 C 1.53036 * 109.50448 * 239.92286 * 2 1 3 5 5 N 1.46843 * 109.52336 * 180.84018 * 4 2 1 6 6 C 1.46849 * 111.19788 * 61.74570 * 5 4 2 7 7 C 1.53037 * 109.52040 * 298.25485 * 6 5 4 8 8 C 1.53005 * 109.50556 * 299.24147 * 7 6 5 9 9 C 1.52999 * 109.47356 * 180.87869 * 8 7 6 10 10 C 1.50707 * 115.54847 * 53.49490 * 9 8 7 11 11 H 1.07992 * 120.00021 * 6.64074 * 10 9 8 12 12 C 1.37876 * 119.99405 * 186.64488 * 10 9 8 13 13 N 1.31510 * 120.00376 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99395 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47458 * 89.99570 * 14 12 10 16 16 H 1.48501 * 109.46762 * 209.99739 * 14 12 10 17 17 H 1.48505 * 109.47280 * 329.99087 * 14 12 10 18 18 C 1.53002 * 117.49748 * 267.82579 * 9 8 7 19 19 C 1.52996 * 117.49910 * 199.16390 * 9 8 7 20 20 C 1.50704 * 109.50377 * 179.16271 * 7 6 5 21 21 O 1.20822 * 119.99685 * 51.62640 * 20 7 6 22 22 O 1.34224 * 119.99897 * 231.63219 * 20 7 6 23 23 C 1.53120 * 109.50443 * 120.08071 * 2 1 3 24 24 H 1.08997 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46972 * 299.99332 * 1 2 3 26 26 H 1.08999 * 109.47052 * 60.00097 * 1 2 3 27 27 H 1.09004 * 109.45912 * 300.85938 * 4 2 1 28 28 H 1.08998 * 109.45746 * 60.83053 * 4 2 1 29 29 H 1.00900 * 110.99576 * 185.83583 * 5 4 2 30 30 H 1.08989 * 109.46551 * 58.26979 * 6 5 4 31 31 H 1.09000 * 109.45735 * 178.25360 * 6 5 4 32 32 H 1.09002 * 109.46778 * 300.88104 * 8 7 6 33 33 H 1.08997 * 109.47050 * 60.87439 * 8 7 6 34 34 H 0.97005 * 119.99995 * 180.02562 * 13 12 10 35 35 H 1.08998 * 117.49736 * 359.97438 * 18 9 8 36 36 H 1.08991 * 117.49739 * 145.01852 * 18 9 8 37 37 H 1.08993 * 117.50014 * 214.97987 * 19 9 8 38 38 H 1.09003 * 117.50062 * 359.97438 * 19 9 8 39 39 H 0.96700 * 116.99845 * 180.02562 * 22 20 7 40 40 H 1.09004 * 109.52053 * 297.54119 * 23 2 1 41 41 H 1.09001 * 109.52190 * 57.72967 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 -1.2483 5 7 3.5093 -0.7408 -1.2386 6 6 4.0238 -1.4716 -0.0734 7 6 3.5720 -0.7710 1.2100 8 6 4.1279 0.6542 1.2368 9 6 3.6941 1.3467 2.5303 10 6 4.0207 0.6093 3.8034 11 1 4.6214 -0.2875 3.7690 12 6 3.5525 1.0797 5.0119 13 7 2.8214 2.1720 5.0538 14 14 3.9580 0.1661 6.5900 15 1 5.2245 0.6951 7.1569 16 1 2.8587 0.3583 7.5696 17 1 4.1131 -1.2817 6.2980 18 6 2.3973 2.1580 2.4966 19 6 3.7479 2.8753 2.5656 20 6 4.0829 -1.5328 2.4057 21 8 5.2542 -1.8188 2.4844 22 8 3.2367 -1.8938 3.3831 23 6 2.0413 -0.7234 1.2489 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.6653 -1.7462 -1.2547 28 1 1.6901 -0.2017 -2.1389 29 1 3.8718 -1.1277 -2.0970 30 1 3.6389 -2.4912 -0.0853 31 1 5.1129 -1.4940 -0.1107 32 1 5.2164 0.6206 1.1901 33 1 3.7446 1.2099 0.3810 34 1 2.4924 2.5031 5.9041 35 1 1.8535 2.1988 1.5528 36 1 1.7807 2.1588 3.3953 37 1 4.0191 3.3476 3.5097 38 1 4.0928 3.3877 1.6675 39 1 3.6109 -2.3807 4.1301 40 1 1.7151 -0.1867 2.1399 41 1 1.6459 -1.7390 1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691714748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -60.334508 kcal Electronic energy + Delta-G solvation = -22877.205385 eV Core-core repulsion = 19757.885404 eV Total energy + Delta-G solvation = -3119.319980 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42089 -38.16786 -36.26300 -35.15603 -32.95173 -32.48999 -31.26368 -26.78223 -26.26804 -25.25066 -23.77908 -22.99905 -20.62183 -19.95280 -19.40571 -18.02198 -17.02070 -16.55423 -16.29241 -15.13972 -14.94830 -14.62288 -14.16794 -13.85062 -13.60780 -13.35795 -13.14079 -12.63223 -12.43910 -11.99999 -11.73794 -11.69206 -11.40516 -11.12225 -10.96855 -10.74801 -10.65631 -10.40854 -10.40345 -10.16171 -10.06254 -9.92705 -9.75873 -9.40885 -9.13325 -8.71661 -8.33799 -8.09900 -7.94245 -5.92041 -3.98882 3.18265 3.26946 3.33214 3.35927 3.84609 4.38456 4.51647 4.96026 5.13675 5.19245 5.23957 5.44520 5.49374 5.70840 5.79193 5.84558 5.91361 5.94908 5.99198 6.09138 6.22075 6.37335 6.40526 6.46754 6.54933 6.68801 6.74293 6.85919 6.98826 7.10268 7.13147 7.20484 7.34216 7.41986 7.46225 7.52557 7.72406 8.01030 8.31772 8.53562 8.85481 8.95422 9.55754 11.00290 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.008943 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.779385 B = 3130.018441 C = 3611.764732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.088 0.912 4 C 0.062 3.938 5 N -0.682 5.682 6 C 0.073 3.927 7 C -0.029 4.029 8 C -0.052 4.052 9 C 0.012 3.988 10 C -0.479 4.479 11 H 0.069 0.931 12 C 0.066 3.934 13 N -0.874 5.874 14 Si 0.892 3.108 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.276 1.276 18 C -0.184 4.184 19 C -0.193 4.193 20 C 0.531 3.469 21 O -0.549 6.549 22 O -0.501 6.501 23 C -0.099 4.099 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.341 0.659 30 H 0.027 0.973 31 H 0.083 0.917 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.257 0.743 35 H 0.041 0.959 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.393 0.607 40 H 0.101 0.899 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 -6.159 -9.676 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.106 0.894 4 C -0.067 4.067 5 N -0.313 5.313 6 C -0.056 4.056 7 C -0.031 4.031 8 C -0.090 4.090 9 C 0.012 3.988 10 C -0.516 4.516 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.513 5.513 14 Si 0.720 3.280 15 H -0.210 1.210 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.222 4.222 19 C -0.231 4.231 20 C 0.377 3.623 21 O -0.441 6.441 22 O -0.310 6.310 23 C -0.137 4.137 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.142 0.858 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.250 0.750 40 H 0.120 0.880 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.639 -5.301 -9.555 11.517 hybrid contribution 0.341 -1.526 1.236 1.993 sum -3.298 -6.827 -8.319 11.255 Atomic orbital electron populations 1.21755 0.95341 1.01218 1.01761 1.21281 0.94844 1.01241 0.93889 0.89403 1.22043 0.87444 0.98392 0.98853 1.60107 1.08207 1.58310 1.04639 1.21847 1.00415 0.93613 0.89756 1.20302 0.97463 0.96611 0.88692 1.21034 0.99203 0.90642 0.98108 1.19013 0.98325 0.89428 0.92054 1.20877 1.30861 1.09843 0.89978 0.91311 1.24900 0.94857 0.94939 0.98815 1.69970 1.34841 1.21589 1.24859 0.86625 0.77807 0.80007 0.83534 1.20976 1.21296 1.20092 1.23131 0.92014 1.06801 1.00237 1.22668 1.03098 0.97869 0.99420 1.22444 0.83656 0.73468 0.82733 1.90619 1.18752 1.54808 1.79909 1.84643 1.44752 1.69800 1.31782 1.21659 0.92379 1.00126 0.99528 0.93297 0.91956 0.93167 0.95643 0.91180 0.84128 0.95504 0.89836 0.92769 0.90914 0.93230 0.94024 0.85832 0.88891 0.93912 0.75028 0.88042 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.20 37.16 0.34 -1.50 16 2 C -0.09 -1.40 2.33 -90.54 -0.21 -1.61 16 3 H 0.09 1.48 4.95 -51.93 -0.26 1.22 16 4 C 0.06 0.79 5.83 -3.84 -0.02 0.77 16 5 N -0.68 -9.20 6.15 -113.82 -0.70 -9.90 16 6 C 0.07 1.15 5.10 -3.83 -0.02 1.13 16 7 C -0.03 -0.54 0.48 -155.53 -0.07 -0.62 16 8 C -0.05 -1.10 3.94 -26.73 -0.11 -1.20 16 9 C 0.01 0.29 1.51 -155.66 -0.24 0.06 16 10 C -0.48 -12.51 6.75 -34.44 -0.23 -12.74 16 11 H 0.07 1.83 3.98 -52.49 -0.21 1.62 16 12 C 0.07 1.76 5.28 -17.82 -0.09 1.66 16 13 N -0.87 -23.68 8.64 55.43 0.48 -23.20 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.18 -4.37 7.68 -26.69 -0.21 -4.57 16 19 C -0.19 -4.75 9.42 -26.69 -0.25 -5.00 16 20 C 0.53 11.11 3.83 36.01 0.14 11.24 16 21 O -0.55 -12.68 16.67 -18.75 -0.31 -13.00 16 22 O -0.50 -9.90 10.77 -39.24 -0.42 -10.33 16 23 C -0.10 -1.74 2.92 -26.57 -0.08 -1.81 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.34 3.68 8.90 -39.29 -0.35 3.33 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.45 5.93 -51.93 -0.31 1.14 16 34 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.04 0.90 6.30 -51.93 -0.33 0.57 16 36 H 0.12 3.27 5.71 -51.93 -0.30 2.97 16 37 H 0.09 2.53 6.85 -51.93 -0.36 2.18 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.39 6.67 9.10 45.56 0.41 7.09 16 40 H 0.10 2.09 6.04 -51.93 -0.31 1.78 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -28.88 304.71 -7.79 -36.67 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.36 Total: 13.50 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.05 Total: -14.19 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: -0.22 Total: -33.10 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.74 Total: -23.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.88 -7.79 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691714748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.667 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds