Wall clock time and date at job start Mon Mar 30 2020 04:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.50099 * 2 1 4 4 C 1.53036 * 109.50448 * 239.92286 * 2 1 3 5 5 N 1.46843 * 109.52336 * 180.84018 * 4 2 1 6 6 C 1.46849 * 111.19788 * 61.74570 * 5 4 2 7 7 C 1.53037 * 109.52040 * 298.25485 * 6 5 4 8 8 C 1.53005 * 109.50556 * 299.24147 * 7 6 5 9 9 C 1.52999 * 109.47356 * 180.87869 * 8 7 6 10 10 C 1.50707 * 115.54847 * 53.49490 * 9 8 7 11 11 H 1.07992 * 120.00021 * 6.64074 * 10 9 8 12 12 C 1.37876 * 119.99405 * 186.64488 * 10 9 8 13 13 N 1.31510 * 120.00376 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99395 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47458 * 89.99570 * 14 12 10 16 16 H 1.48501 * 109.46762 * 209.99739 * 14 12 10 17 17 H 1.48505 * 109.47280 * 329.99087 * 14 12 10 18 18 C 1.53002 * 117.49748 * 267.82579 * 9 8 7 19 19 C 1.52996 * 117.49910 * 199.16390 * 9 8 7 20 20 C 1.50704 * 109.50377 * 179.16271 * 7 6 5 21 21 O 1.20822 * 119.99685 * 51.62640 * 20 7 6 22 22 O 1.34224 * 119.99897 * 231.63219 * 20 7 6 23 23 C 1.53120 * 109.50443 * 120.08071 * 2 1 3 24 24 H 1.08997 * 109.47082 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46972 * 299.99332 * 1 2 3 26 26 H 1.08999 * 109.47052 * 60.00097 * 1 2 3 27 27 H 1.09004 * 109.45912 * 300.85938 * 4 2 1 28 28 H 1.08998 * 109.45746 * 60.83053 * 4 2 1 29 29 H 1.00900 * 110.99576 * 185.83583 * 5 4 2 30 30 H 1.08989 * 109.46551 * 58.26979 * 6 5 4 31 31 H 1.09000 * 109.45735 * 178.25360 * 6 5 4 32 32 H 1.09002 * 109.46778 * 300.88104 * 8 7 6 33 33 H 1.08997 * 109.47050 * 60.87439 * 8 7 6 34 34 H 0.97005 * 119.99995 * 180.02562 * 13 12 10 35 35 H 1.08998 * 117.49736 * 359.97438 * 18 9 8 36 36 H 1.08991 * 117.49739 * 145.01852 * 18 9 8 37 37 H 1.08993 * 117.50014 * 214.97987 * 19 9 8 38 38 H 1.09003 * 117.50062 * 359.97438 * 19 9 8 39 39 H 0.96700 * 116.99845 * 180.02562 * 22 20 7 40 40 H 1.09004 * 109.52053 * 297.54119 * 23 2 1 41 41 H 1.09001 * 109.52190 * 57.72967 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7230 -1.2483 5 7 3.5093 -0.7408 -1.2386 6 6 4.0238 -1.4716 -0.0734 7 6 3.5720 -0.7710 1.2100 8 6 4.1279 0.6542 1.2368 9 6 3.6941 1.3467 2.5303 10 6 4.0207 0.6093 3.8034 11 1 4.6214 -0.2875 3.7690 12 6 3.5525 1.0797 5.0119 13 7 2.8214 2.1720 5.0538 14 14 3.9580 0.1661 6.5900 15 1 5.2245 0.6951 7.1569 16 1 2.8587 0.3583 7.5696 17 1 4.1131 -1.2817 6.2980 18 6 2.3973 2.1580 2.4966 19 6 3.7479 2.8753 2.5656 20 6 4.0829 -1.5328 2.4057 21 8 5.2542 -1.8188 2.4844 22 8 3.2367 -1.8938 3.3831 23 6 2.0413 -0.7234 1.2489 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 1.6653 -1.7462 -1.2547 28 1 1.6901 -0.2017 -2.1389 29 1 3.8718 -1.1277 -2.0970 30 1 3.6389 -2.4912 -0.0853 31 1 5.1129 -1.4940 -0.1107 32 1 5.2164 0.6206 1.1901 33 1 3.7446 1.2099 0.3810 34 1 2.4924 2.5031 5.9041 35 1 1.8535 2.1988 1.5528 36 1 1.7807 2.1588 3.3953 37 1 4.0191 3.3476 3.5097 38 1 4.0928 3.3877 1.6675 39 1 3.6109 -2.3807 4.1301 40 1 1.7151 -0.1867 2.1399 41 1 1.6459 -1.7390 1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691714748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:58 Heat of formation + Delta-G solvation = -79.013667 kcal Electronic energy + Delta-G solvation = -22878.015374 eV Core-core repulsion = 19757.885404 eV Total energy + Delta-G solvation = -3120.129969 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96891 -39.61694 -38.03654 -36.80339 -34.14244 -34.06001 -33.07366 -28.49591 -27.39271 -27.12837 -25.17751 -24.28940 -22.55758 -21.33278 -21.12230 -19.60130 -18.60170 -18.30662 -17.77543 -16.98348 -16.26130 -16.12909 -15.76714 -15.30712 -14.98143 -14.80833 -14.57961 -14.28690 -13.78444 -13.53113 -13.30878 -13.02995 -12.87595 -12.74973 -12.48851 -12.43814 -12.33154 -12.08642 -12.01874 -11.84152 -11.73187 -11.49063 -11.24200 -11.08242 -10.74882 -10.67496 -10.10289 -9.89581 -9.30789 -7.94361 -6.06122 1.36044 1.39785 1.46406 1.58106 2.40280 2.42423 3.10201 3.42320 3.65301 3.93570 4.01592 4.06089 4.19460 4.23538 4.55419 4.60450 4.61450 4.68678 4.75572 4.83407 4.89369 4.90474 4.96700 5.04689 5.07361 5.17380 5.26481 5.32413 5.39634 5.44686 5.54348 5.62194 5.66379 5.70022 5.87739 5.98817 6.06458 6.31253 6.51409 6.61465 6.93557 7.27852 7.50173 8.95875 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.008943 C = 0.007751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.779385 B = 3130.018441 C = 3611.764732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.067 0.933 4 C 0.065 3.935 5 N -0.686 5.686 6 C 0.081 3.919 7 C -0.030 4.030 8 C -0.041 4.041 9 C 0.006 3.994 10 C -0.489 4.489 11 H 0.063 0.937 12 C 0.024 3.976 13 N -0.894 5.894 14 Si 0.938 3.062 15 H -0.292 1.292 16 H -0.286 1.286 17 H -0.257 1.257 18 C -0.166 4.166 19 C -0.203 4.203 20 C 0.527 3.473 21 O -0.576 6.576 22 O -0.502 6.502 23 C -0.092 4.092 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.360 0.640 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.254 0.746 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.403 0.597 40 H 0.065 0.935 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -7.375 -11.572 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.063 4.063 5 N -0.319 5.319 6 C -0.049 4.049 7 C -0.031 4.031 8 C -0.078 4.078 9 C 0.005 3.995 10 C -0.526 4.526 11 H 0.081 0.919 12 C -0.175 4.175 13 N -0.533 5.533 14 Si 0.765 3.235 15 H -0.219 1.219 16 H -0.211 1.211 17 H -0.181 1.181 18 C -0.204 4.204 19 C -0.241 4.241 20 C 0.374 3.626 21 O -0.469 6.469 22 O -0.313 6.313 23 C -0.130 4.130 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.181 0.819 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.431 -6.533 -11.463 13.918 hybrid contribution 0.592 -1.123 1.857 2.250 sum -3.839 -7.656 -9.606 12.870 Atomic orbital electron populations 1.21713 0.93758 1.02151 1.02018 1.21240 0.96193 0.99895 0.93716 0.91431 1.22051 0.86749 0.99148 0.98396 1.60036 1.08940 1.58241 1.04689 1.21686 1.00051 0.94055 0.89074 1.20369 0.98281 0.95132 0.89359 1.20889 0.98073 0.92084 0.96776 1.19166 0.98379 0.88971 0.92954 1.21091 1.30521 1.09891 0.91063 0.91883 1.25503 0.95045 0.95688 1.01279 1.70118 1.35582 1.22519 1.25072 0.85879 0.76983 0.80132 0.80535 1.21914 1.21131 1.18141 1.22895 0.91353 1.06055 1.00084 1.22605 1.04262 0.98554 0.98679 1.22994 0.83354 0.73045 0.83250 1.90597 1.19881 1.55926 1.80540 1.84626 1.44727 1.69771 1.32126 1.21549 0.91346 1.00546 0.99524 0.92037 0.93603 0.91051 0.94258 0.88767 0.81949 0.94187 0.90639 0.94500 0.89644 0.93589 0.91723 0.88507 0.91998 0.92052 0.73861 0.91588 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.20 71.98 0.66 -2.51 16 2 C -0.09 -2.48 2.33 -10.74 -0.03 -2.51 16 3 H 0.07 2.12 4.95 -2.39 -0.01 2.10 16 4 C 0.07 1.40 5.83 86.33 0.50 1.90 16 5 N -0.69 -16.17 6.15 -514.02 -3.16 -19.33 16 6 C 0.08 2.36 5.10 86.33 0.44 2.80 16 7 C -0.03 -1.08 0.48 -52.85 -0.03 -1.11 16 8 C -0.04 -1.68 3.94 30.60 0.12 -1.56 16 9 C 0.01 0.27 1.51 -52.93 -0.08 0.19 16 10 C -0.49 -25.81 6.75 25.60 0.17 -25.64 16 11 H 0.06 3.38 3.98 -2.91 -0.01 3.37 16 12 C 0.02 1.30 5.28 84.65 0.45 1.74 16 13 N -0.89 -49.57 8.64 21.45 0.19 -49.38 16 14 Si 0.94 43.01 29.54 68.60 2.03 45.03 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 18 C -0.17 -7.92 7.68 30.62 0.24 -7.68 16 19 C -0.20 -10.12 9.42 30.62 0.29 -9.83 16 20 C 0.53 21.72 3.83 71.24 0.27 22.00 16 21 O -0.58 -26.46 16.67 21.98 0.37 -26.10 16 22 O -0.50 -19.61 10.77 -51.35 -0.55 -20.16 16 23 C -0.09 -3.07 2.92 30.70 0.09 -2.98 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 29 H 0.36 6.38 8.90 -89.69 -0.80 5.58 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 2.33 8.00 -2.39 -0.02 2.31 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.09 3.28 5.93 -2.39 -0.01 3.26 16 34 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 35 H 0.06 2.74 6.30 -2.39 -0.02 2.72 16 36 H 0.10 5.23 5.71 -2.39 -0.01 5.21 16 37 H 0.06 3.47 6.85 -2.39 -0.02 3.45 16 38 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.40 13.41 9.10 -74.06 -0.67 12.73 16 40 H 0.07 2.69 6.04 -2.39 -0.01 2.68 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -62.49 304.71 1.56 -60.93 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.41 Total: 34.18 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 3.10 Total: -25.17 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -2.97 Total: -68.72 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.19 Total: -46.26 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -62.49 1.56 -60.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691714748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.080 kcal (2) G-P(sol) polarization free energy of solvation -62.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds