Wall clock time and date at job start Mon Mar 30 2020 04:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52603 * 2 1 4 4 C 1.53112 * 109.52422 * 239.86556 * 2 1 3 5 5 C 1.53041 * 109.28052 * 182.37865 * 4 2 1 6 6 N 1.46850 * 109.52087 * 59.18101 * 5 4 2 7 7 C 1.46844 * 111.20104 * 298.26308 * 6 5 4 8 8 C 1.53035 * 109.51580 * 61.74007 * 7 6 5 9 9 C 1.53007 * 109.49923 * 60.76420 * 8 7 6 10 10 C 1.52998 * 109.47432 * 49.87853 * 9 8 7 11 11 C 1.50701 * 115.54911 * 27.98297 * 10 9 8 12 12 H 1.08003 * 119.99937 * 354.68270 * 11 10 9 13 13 C 1.37877 * 120.00070 * 174.68368 * 11 10 9 14 14 N 1.31517 * 119.99800 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46937 * 59.99760 * 15 13 11 17 17 H 1.48498 * 109.47296 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46908 * 300.00072 * 15 13 11 19 19 C 1.52997 * 117.49876 * 242.27490 * 10 9 8 20 20 C 1.52996 * 117.49949 * 173.65057 * 10 9 8 21 21 C 1.50705 * 109.50188 * 180.87393 * 8 7 6 22 22 O 1.20828 * 119.99971 * 231.38216 * 21 8 7 23 23 O 1.34225 * 119.99650 * 51.39449 * 21 8 7 24 24 H 1.09003 * 109.47471 * 180.12658 * 1 2 3 25 25 H 1.08994 * 109.47502 * 300.13509 * 1 2 3 26 26 H 1.09003 * 109.46699 * 60.12761 * 1 2 3 27 27 H 1.08999 * 109.50265 * 62.44199 * 4 2 1 28 28 H 1.08997 * 109.51193 * 302.32444 * 4 2 1 29 29 H 1.09003 * 109.46107 * 299.17328 * 5 4 2 30 30 H 1.08994 * 109.46479 * 179.19460 * 5 4 2 31 31 H 1.00899 * 111.00035 * 174.16330 * 6 5 4 32 32 H 1.08997 * 109.46772 * 181.75498 * 7 6 5 33 33 H 1.09005 * 109.46043 * 301.73380 * 7 6 5 34 34 H 1.09006 * 109.47096 * 169.88232 * 9 8 7 35 35 H 1.08996 * 109.46591 * 289.87457 * 9 8 7 36 36 H 0.97001 * 119.99584 * 179.97438 * 14 13 11 37 37 H 1.08999 * 117.49899 * 359.97438 * 19 10 9 38 38 H 1.09002 * 117.49589 * 145.01863 * 19 10 9 39 39 H 1.08998 * 117.50130 * 214.97841 * 20 10 9 40 40 H 1.09005 * 117.49671 * 359.97438 * 20 10 9 41 41 H 0.96708 * 116.99746 * 179.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7245 -1.2480 5 6 3.5709 -0.7733 -1.2127 6 7 4.0115 -1.4767 -0.0013 7 6 3.5721 -0.7736 1.2106 8 6 2.0429 -0.7250 1.2473 9 6 1.4871 -2.1503 1.2749 10 6 2.1944 -2.9525 2.3690 11 6 2.7093 -2.1481 3.5348 12 1 2.6445 -1.0702 3.5177 13 6 3.2633 -2.7883 4.6230 14 7 3.3419 -4.1010 4.6439 15 14 3.9010 -1.7914 6.0683 16 1 2.7904 -0.9941 6.6481 17 1 4.4442 -2.7092 7.1016 18 1 4.9760 -0.8781 5.6037 19 6 3.0112 -4.1712 1.9352 20 6 1.6762 -4.3628 2.6578 21 6 1.5925 0.0154 2.4803 22 8 0.7765 -0.4823 3.2195 23 8 2.0978 1.2277 2.7571 24 1 -0.3634 -1.0277 0.0023 25 1 -0.3634 0.5159 0.8887 26 1 -0.3633 0.5119 -0.8912 27 1 1.7153 -0.1886 -2.1393 28 1 1.6456 -1.7397 -1.2677 29 1 3.9666 0.2424 -1.2070 30 1 3.9379 -1.3011 -2.0929 31 1 5.0123 -1.6056 -0.0018 32 1 3.9398 -1.3016 2.0904 33 1 3.9677 0.2421 1.2048 34 1 0.4172 -2.1191 1.4812 35 1 1.6571 -2.6252 0.3087 36 1 3.7320 -4.5513 5.4093 37 1 3.0444 -4.4018 0.8704 38 1 3.9215 -4.3914 2.4930 39 1 1.7082 -4.7090 3.6908 40 1 0.8312 -4.7189 2.0685 41 1 1.7782 1.6639 3.5589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693472715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:55 Heat of formation + Delta-G solvation = -45.544816 kcal Electronic energy + Delta-G solvation = -23033.814923 eV Core-core repulsion = 19915.136272 eV Total energy + Delta-G solvation = -3118.678651 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65729 -38.08378 -36.19499 -35.21241 -33.40491 -31.67313 -31.08933 -27.70448 -25.83365 -25.50207 -23.74677 -21.78621 -20.80104 -20.41495 -19.19956 -18.32056 -16.94629 -16.47913 -16.13282 -15.28401 -14.79964 -14.35142 -14.25463 -13.92636 -13.40855 -13.29335 -13.12199 -12.54364 -12.35969 -12.11737 -11.76031 -11.66410 -11.40745 -11.04422 -10.93716 -10.87948 -10.65396 -10.60190 -10.33140 -10.20586 -9.96437 -9.71348 -9.51101 -9.41428 -9.10017 -8.49765 -8.02119 -7.86648 -7.80806 -5.84212 -3.87269 3.12584 3.30584 3.36302 3.38945 3.74879 4.44493 4.71247 4.99566 5.09850 5.14652 5.21852 5.50268 5.64009 5.72431 5.77886 5.85134 5.87467 6.03542 6.06491 6.15861 6.18163 6.28301 6.38467 6.43144 6.64197 6.68816 6.88154 6.92185 7.01114 7.12321 7.25109 7.36637 7.51100 7.58059 7.59745 7.80156 7.87670 8.13508 8.44103 8.62799 8.75664 9.03302 9.62834 11.08775 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.009479 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.011801 B = 2953.242287 C = 3365.949472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.069 0.931 4 C -0.110 4.110 5 C 0.055 3.945 6 N -0.672 5.672 7 C 0.058 3.942 8 C -0.016 4.016 9 C -0.048 4.048 10 C 0.031 3.969 11 C -0.464 4.464 12 H 0.061 0.939 13 C 0.059 3.941 14 N -0.874 5.874 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.173 4.173 20 C -0.199 4.199 21 C 0.495 3.505 22 O -0.485 6.485 23 O -0.533 6.533 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.021 0.979 30 H 0.068 0.932 31 H 0.342 0.658 32 H 0.131 0.869 33 H 0.020 0.980 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.256 0.744 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.033 0.967 41 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 8.317 -9.841 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.088 0.912 4 C -0.148 4.148 5 C -0.074 4.074 6 N -0.303 5.303 7 C -0.071 4.071 8 C -0.017 4.017 9 C -0.085 4.085 10 C 0.030 3.970 11 C -0.501 4.501 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.513 5.513 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.211 4.211 20 C -0.236 4.236 21 C 0.336 3.664 22 O -0.370 6.370 23 O -0.345 6.345 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.052 0.948 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.150 7.383 -9.860 12.371 hybrid contribution 0.731 1.516 1.499 2.254 sum -0.419 8.899 -8.360 12.218 Atomic orbital electron populations 1.21908 0.95115 1.02632 1.01077 1.21239 0.95774 0.98994 0.94402 0.91229 1.21674 0.95352 1.01488 0.96298 1.21933 0.95697 0.95989 0.93815 1.60102 1.18196 1.51063 1.00960 1.22490 0.92563 0.96471 0.95539 1.20340 0.97283 0.95815 0.88290 1.21031 0.98133 0.90495 0.98856 1.18716 0.98203 0.86360 0.93672 1.20841 1.36524 0.92242 1.00489 0.92148 1.24971 0.96342 0.94867 0.98030 1.69997 1.44478 1.06901 1.29879 0.86818 0.79087 0.80177 0.82984 1.20365 1.21258 1.20380 1.22617 0.96354 1.07047 0.95052 1.23018 0.94273 1.04092 1.02267 1.22918 0.78553 0.77953 0.86927 1.90769 1.32586 1.65701 1.47972 1.84552 1.68214 1.33742 1.48037 0.91644 0.93088 0.92868 0.91998 0.90423 0.96045 0.91352 0.84047 0.85172 0.96223 0.93014 0.91568 0.93314 0.93658 0.89121 0.86378 0.94817 0.74650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.60 37.16 0.32 -1.81 16 2 C -0.09 -1.29 2.05 -90.50 -0.19 -1.47 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.11 -1.47 5.04 -26.65 -0.13 -1.60 16 5 C 0.06 0.73 6.55 -3.83 -0.03 0.70 16 6 N -0.67 -10.71 6.32 -113.82 -0.72 -11.43 16 7 C 0.06 1.07 4.58 -3.84 -0.02 1.05 16 8 C -0.02 -0.29 0.25 -155.58 -0.04 -0.33 16 9 C -0.05 -1.01 3.14 -26.73 -0.08 -1.09 16 10 C 0.03 0.76 1.66 -155.66 -0.26 0.50 16 11 C -0.46 -12.24 5.05 -34.44 -0.17 -12.42 16 12 H 0.06 1.56 3.21 -52.48 -0.17 1.39 16 13 C 0.06 1.61 5.28 -17.82 -0.09 1.51 16 14 N -0.87 -24.49 8.62 55.43 0.48 -24.01 16 15 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C -0.17 -4.27 9.33 -26.73 -0.25 -4.52 16 20 C -0.20 -5.15 9.37 -26.73 -0.25 -5.40 16 21 C 0.49 9.98 3.13 36.01 0.11 10.10 16 22 O -0.49 -11.47 14.56 -18.75 -0.27 -11.74 16 23 O -0.53 -9.05 13.04 -39.24 -0.51 -9.56 16 24 H 0.06 0.97 6.63 -51.93 -0.34 0.63 16 25 H 0.05 0.77 7.32 -51.93 -0.38 0.39 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.12 6.37 -51.93 -0.33 0.78 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.34 4.93 8.90 -39.29 -0.35 4.58 16 32 H 0.13 2.89 4.88 -51.93 -0.25 2.64 16 33 H 0.02 0.35 7.95 -51.93 -0.41 -0.07 16 34 H 0.05 1.13 6.49 -51.93 -0.34 0.80 16 35 H 0.07 1.32 5.59 -51.93 -0.29 1.03 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.04 1.04 8.03 -51.93 -0.42 0.63 16 38 H 0.09 2.46 6.74 -51.93 -0.35 2.11 16 39 H 0.12 3.39 5.82 -51.93 -0.30 3.09 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.40 5.16 9.10 45.56 0.41 5.57 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -30.15 301.63 -7.77 -37.93 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.19 Total: 12.74 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.08 Total: -14.78 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.24 Total: -35.44 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.78 Total: -21.30 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.15 -7.77 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693472715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.618 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds