Wall clock time and date at job start Mon Mar 30 2020 04:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.52603 * 2 1 4 4 C 1.53112 * 109.52422 * 239.86556 * 2 1 3 5 5 C 1.53041 * 109.28052 * 182.37865 * 4 2 1 6 6 N 1.46850 * 109.52087 * 59.18101 * 5 4 2 7 7 C 1.46844 * 111.20104 * 298.26308 * 6 5 4 8 8 C 1.53035 * 109.51580 * 61.74007 * 7 6 5 9 9 C 1.53007 * 109.49923 * 60.76420 * 8 7 6 10 10 C 1.52998 * 109.47432 * 49.87853 * 9 8 7 11 11 C 1.50701 * 115.54911 * 27.98297 * 10 9 8 12 12 H 1.08003 * 119.99937 * 354.68270 * 11 10 9 13 13 C 1.37877 * 120.00070 * 174.68368 * 11 10 9 14 14 N 1.31517 * 119.99800 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00162 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46937 * 59.99760 * 15 13 11 17 17 H 1.48498 * 109.47296 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46908 * 300.00072 * 15 13 11 19 19 C 1.52997 * 117.49876 * 242.27490 * 10 9 8 20 20 C 1.52996 * 117.49949 * 173.65057 * 10 9 8 21 21 C 1.50705 * 109.50188 * 180.87393 * 8 7 6 22 22 O 1.20828 * 119.99971 * 231.38216 * 21 8 7 23 23 O 1.34225 * 119.99650 * 51.39449 * 21 8 7 24 24 H 1.09003 * 109.47471 * 180.12658 * 1 2 3 25 25 H 1.08994 * 109.47502 * 300.13509 * 1 2 3 26 26 H 1.09003 * 109.46699 * 60.12761 * 1 2 3 27 27 H 1.08999 * 109.50265 * 62.44199 * 4 2 1 28 28 H 1.08997 * 109.51193 * 302.32444 * 4 2 1 29 29 H 1.09003 * 109.46107 * 299.17328 * 5 4 2 30 30 H 1.08994 * 109.46479 * 179.19460 * 5 4 2 31 31 H 1.00899 * 111.00035 * 174.16330 * 6 5 4 32 32 H 1.08997 * 109.46772 * 181.75498 * 7 6 5 33 33 H 1.09005 * 109.46043 * 301.73380 * 7 6 5 34 34 H 1.09006 * 109.47096 * 169.88232 * 9 8 7 35 35 H 1.08996 * 109.46591 * 289.87457 * 9 8 7 36 36 H 0.97001 * 119.99584 * 179.97438 * 14 13 11 37 37 H 1.08999 * 117.49899 * 359.97438 * 19 10 9 38 38 H 1.09002 * 117.49589 * 145.01863 * 19 10 9 39 39 H 1.08998 * 117.50130 * 214.97841 * 20 10 9 40 40 H 1.09005 * 117.49671 * 359.97438 * 20 10 9 41 41 H 0.96708 * 116.99746 * 179.97438 * 23 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7245 -1.2480 5 6 3.5709 -0.7733 -1.2127 6 7 4.0115 -1.4767 -0.0013 7 6 3.5721 -0.7736 1.2106 8 6 2.0429 -0.7250 1.2473 9 6 1.4871 -2.1503 1.2749 10 6 2.1944 -2.9525 2.3690 11 6 2.7093 -2.1481 3.5348 12 1 2.6445 -1.0702 3.5177 13 6 3.2633 -2.7883 4.6230 14 7 3.3419 -4.1010 4.6439 15 14 3.9010 -1.7914 6.0683 16 1 2.7904 -0.9941 6.6481 17 1 4.4442 -2.7092 7.1016 18 1 4.9760 -0.8781 5.6037 19 6 3.0112 -4.1712 1.9352 20 6 1.6762 -4.3628 2.6578 21 6 1.5925 0.0154 2.4803 22 8 0.7765 -0.4823 3.2195 23 8 2.0978 1.2277 2.7571 24 1 -0.3634 -1.0277 0.0023 25 1 -0.3634 0.5159 0.8887 26 1 -0.3633 0.5119 -0.8912 27 1 1.7153 -0.1886 -2.1393 28 1 1.6456 -1.7397 -1.2677 29 1 3.9666 0.2424 -1.2070 30 1 3.9379 -1.3011 -2.0929 31 1 5.0123 -1.6056 -0.0018 32 1 3.9398 -1.3016 2.0904 33 1 3.9677 0.2421 1.2048 34 1 0.4172 -2.1191 1.4812 35 1 1.6571 -2.6252 0.3087 36 1 3.7320 -4.5513 5.4093 37 1 3.0444 -4.4018 0.8704 38 1 3.9215 -4.3914 2.4930 39 1 1.7082 -4.7090 3.6908 40 1 0.8312 -4.7189 2.0685 41 1 1.7782 1.6639 3.5589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693472715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:55 Heat of formation + Delta-G solvation = -65.946624 kcal Electronic energy + Delta-G solvation = -23034.699612 eV Core-core repulsion = 19915.136272 eV Total energy + Delta-G solvation = -3119.563340 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16531 -39.51226 -37.98432 -36.80070 -34.65169 -33.57409 -32.59976 -28.95858 -27.56752 -27.30567 -25.11301 -23.08013 -22.45920 -22.08660 -20.98154 -19.86135 -18.45265 -17.98729 -17.88848 -17.03145 -16.16192 -16.13063 -15.58779 -15.44563 -14.88234 -14.69114 -14.56760 -14.16305 -13.81675 -13.46906 -13.23241 -13.12192 -12.88826 -12.74882 -12.63797 -12.59886 -12.45627 -11.96786 -11.88830 -11.67466 -11.62913 -11.41924 -11.23228 -11.04230 -10.73920 -10.51269 -9.98338 -9.81909 -9.07836 -7.90652 -5.96578 1.35464 1.38307 1.43014 1.56815 2.34685 2.43299 3.13529 3.52087 3.78673 3.85219 3.97433 4.10925 4.26084 4.35674 4.55186 4.60375 4.67397 4.73358 4.75316 4.90472 4.95590 5.01006 5.04819 5.07619 5.12658 5.25117 5.25514 5.33643 5.39964 5.47544 5.54650 5.62752 5.66336 5.69728 5.86221 6.09978 6.33825 6.36274 6.54010 6.71958 7.00867 7.27984 7.54141 9.00977 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020096 B = 0.009479 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.011801 B = 2953.242287 C = 3365.949472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 H 0.080 0.920 4 C -0.108 4.108 5 C 0.055 3.945 6 N -0.684 5.684 7 C 0.068 3.932 8 C -0.018 4.018 9 C -0.036 4.036 10 C 0.029 3.971 11 C -0.464 4.464 12 H 0.067 0.933 13 C 0.007 3.993 14 N -0.899 5.899 15 Si 0.932 3.068 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.155 4.155 20 C -0.217 4.217 21 C 0.495 3.505 22 O -0.530 6.530 23 O -0.524 6.524 24 H 0.054 0.946 25 H 0.034 0.966 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.090 0.910 31 H 0.349 0.651 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.251 0.749 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 10.243 -12.086 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 H 0.099 0.901 4 C -0.146 4.146 5 C -0.074 4.074 6 N -0.316 5.316 7 C -0.062 4.062 8 C -0.019 4.019 9 C -0.074 4.074 10 C 0.029 3.971 11 C -0.501 4.501 12 H 0.084 0.916 13 C -0.191 4.191 14 N -0.539 5.539 15 Si 0.759 3.241 16 H -0.210 1.210 17 H -0.214 1.214 18 H -0.190 1.190 19 C -0.193 4.193 20 C -0.255 4.255 21 C 0.338 3.662 22 O -0.418 6.418 23 O -0.337 6.337 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.108 0.892 31 H 0.168 0.832 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.065 0.935 41 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -0.823 9.343 -12.114 15.321 hybrid contribution 0.624 0.956 2.183 2.463 sum -0.199 10.299 -9.931 14.309 Atomic orbital electron populations 1.21894 0.94581 1.02183 1.01854 1.21262 0.96190 0.99214 0.93234 0.90125 1.21707 0.95325 1.01030 0.96489 1.22044 0.95640 0.96714 0.92987 1.60050 1.18932 1.51473 1.01108 1.22135 0.92210 0.96458 0.95370 1.20368 0.97409 0.94608 0.89549 1.20879 0.96815 0.91837 0.97826 1.18920 0.97713 0.86119 0.94361 1.21179 1.35308 0.92800 1.00814 0.91587 1.25636 0.97330 0.95728 1.00395 1.70159 1.45618 1.07932 1.30188 0.86005 0.78595 0.79034 0.80463 1.20950 1.21408 1.19044 1.22388 0.94471 1.07071 0.95351 1.22936 0.95552 1.05934 1.01071 1.23324 0.77600 0.78351 0.86883 1.90756 1.34562 1.66970 1.49520 1.84498 1.67556 1.32531 1.49110 0.92736 0.94675 0.89719 0.88677 0.91545 0.94800 0.89170 0.83241 0.89231 0.95341 0.94396 0.90350 0.93901 0.91720 0.91823 0.89397 0.93470 0.72589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 8.60 71.98 0.62 -3.20 16 2 C -0.08 -2.16 2.05 -10.72 -0.02 -2.19 16 3 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 4 C -0.11 -2.42 5.04 30.65 0.15 -2.26 16 5 C 0.06 1.22 6.55 86.33 0.57 1.79 16 6 N -0.68 -20.09 6.32 -514.00 -3.25 -23.34 16 7 C 0.07 2.39 4.58 86.33 0.40 2.78 16 8 C -0.02 -0.63 0.25 -52.87 -0.01 -0.65 16 9 C -0.04 -1.50 3.14 30.60 0.10 -1.40 16 10 C 0.03 1.45 1.66 -52.93 -0.09 1.36 16 11 C -0.46 -24.79 5.05 25.60 0.13 -24.66 16 12 H 0.07 3.41 3.21 -2.91 -0.01 3.41 16 13 C 0.01 0.39 5.28 84.65 0.45 0.84 16 14 N -0.90 -52.05 8.62 21.45 0.18 -51.87 16 15 Si 0.93 44.46 29.54 68.60 2.03 46.48 16 16 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 19 C -0.15 -7.71 9.33 30.59 0.29 -7.43 16 20 C -0.22 -11.49 9.37 30.59 0.29 -11.21 16 21 C 0.49 19.49 3.13 71.24 0.22 19.71 16 22 O -0.53 -25.12 14.56 21.96 0.32 -24.80 16 23 O -0.52 -16.79 13.04 -51.37 -0.67 -17.46 16 24 H 0.05 1.52 6.63 -2.39 -0.02 1.50 16 25 H 0.03 1.00 7.32 -2.39 -0.02 0.98 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.67 6.37 -2.39 -0.02 1.65 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.35 9.31 8.90 -89.69 -0.80 8.51 16 32 H 0.09 3.94 4.88 -2.39 -0.01 3.93 16 33 H 0.03 0.94 7.95 -2.38 -0.02 0.92 16 34 H 0.04 1.65 6.49 -2.38 -0.02 1.64 16 35 H 0.08 3.00 5.59 -2.39 -0.01 2.99 16 36 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.06 2.93 8.03 -2.39 -0.02 2.91 16 38 H 0.06 3.53 6.74 -2.39 -0.02 3.51 16 39 H 0.09 5.25 5.82 -2.39 -0.01 5.23 16 40 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.41 10.04 9.10 -74.05 -0.67 9.36 16 Total: -1.00 -66.25 301.63 1.29 -64.97 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.40 Total: 32.52 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 3.08 Total: -26.50 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -3.06 Total: -75.21 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.35 Total: -42.26 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -66.25 1.29 -64.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693472715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.982 kcal (2) G-P(sol) polarization free energy of solvation -66.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds